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The fact that none of the known DNA polymerases is able to initiate
DNA chains but only to elongate from a free 3' -OH group raises the
problem of how replication is initiated, both at the replication
origin and on Okazaki frag ments. It was first shown by A. KORNBERG
et al. that a general mechanism to initiate replication is through
the formation of an RNA primer catalyzed by RNA polymerases or by a
new class of enzymes, the primases (KORNBERG 1980). This mechanism,
which can be used in the case of circular DNA molecules or linear
DNAs that circularize or form concatemers, cannot be used at the
ends of linear DNAs since the RNA primer is removed from the DNA
chain, and there is no way of filling the gap resulting at the 5'
-ends of the newly synthesized DNA chain. In some cases linear DNA
molecules contain a palin dromic nucleotide sequence at the 3' -end
that allows the formation of a hairpin structure which provides the
needed free 3'-OH group for elongation. This mechanism, first
proposed by CAVALIER-SMITH (1974) for eukaryotic DNA repli cation,
was shown to take place in several systems (KORNBERG 1980, 1982).
Another mechanism to initiate replication consists in the specific
nicking of one of the strands of a circular double-stranded DNA,
producing a 3'-OH group available for elongation (KORNBERG 1980)."
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