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This book is a "How To" guide for modeling population dynamics
using Integral Projection Models (IPM) starting from observational
data. It is written by a leading research team in this area and
includes code in the R language (in the text and online) to carry
out all computations. The intended audience are ecologists,
evolutionary biologists, and mathematical biologists interested in
developing data-driven models for animal and plant populations.
IPMs may seem hard as they involve integrals. The aim of this book
is to demystify IPMs, so they become the model of choice for
populations structured by size or other continuously varying
traits. The book uses real examples of increasing complexity to
show how the life-cycle of the study organism naturally leads to
the appropriate statistical analysis, which leads directly to the
IPM itself. A wide range of model types and analyses are presented,
including model construction, computational methods, and the
underlying theory, with the more technical material in Boxes and
Appendices. Self-contained R code which replicates all of the
figures and calculations within the text is available to readers on
GitHub. Stephen P. Ellner is Horace White Professor of Ecology and
Evolutionary Biology at Cornell University, USA; Dylan Z. Childs is
Lecturer and NERC Postdoctoral Fellow in the Department of Animal
and Plant Sciences at The University of Sheffield, UK; Mark Rees is
Professor in the Department of Animal and Plant Sciences at The
University of Sheffield, UK.
R is rapidly becoming the standard software for statistical
analyses, graphical presentation of data, and programming in the
natural, physical, social, and engineering sciences. Getting
Started with R is now the go-to introductory guide for biologists
wanting to learn how to use R in their research. It teaches readers
how to import, explore, graph, and analyse data, while keeping them
focused on their ultimate goals: clearly communicating their data
in oral presentations, posters, papers, and reports. It provides a
consistent workflow for using R that is simple, efficient,
reliable, and reproducible. This second edition has been updated
and expanded while retaining the concise and engaging nature of its
predecessor, offering an accessible and fun introduction to the
packages dplyr and ggplot2 for data manipulation and graphing. It
expands the set of basic statistics considered in the first edition
to include new examples of a simple regression, a one-way and a
two-way ANOVA. Finally, it introduces a new chapter on the
generalised linear model. Getting Started with R is suitable for
undergraduates, graduate students, professional researchers, and
practitioners in the biological sciences.
Experiments, surveys, measurements, and observations all generate
data. These data can provide useful insights for solving problems,
guiding decisions, and formulating strategy. Progressing from
relatively unprocessed data to insight, and doing so efficiently,
reliably, and confidently, does not come easily, and yet gaining
insights from data is a fundamental skill for science as well as
many other fields and often overlooked in most textbooks of
statistics and data analysis. This accessible and engaging book
provides readers with the knowledge, experience, and confidence to
work with data and unlock essential information (insights) from
data summaries and visualisations. Based on a proven and successful
undergraduate course structure, it charts the journey from initial
question, through data preparation, import, cleaning, tidying,
checking, double-checking, manipulation, and final visualization.
These basic skills are sufficient to gain useful insights from data
without the need for any statistics; there is enough to learn about
even before delving into that world! The book focuses on gaining
insights from data via visualisations and summaries. The journey
from raw data to insights is clearly illustrated by means of a
comprehensive Workflow Demonstration in the book featuring data
collected in a real-life study and applicable to many types of
question, study, and data. Along the way, readers discover how to
efficiently and intuitively use R, RStudio, and tidyverse software,
learning from the detailed descriptions of each step in the
instructional journey to progress from the raw data to creating
elegant and informative visualisations that reveal answers to the
initial questions posed. There are an additional three
demonstrations online! Insights from Data with R is suitable for
undergraduate students and their instructors in the life and
environmental sciences seeking to harness the power of R, RStudio,
and tidyverse software to master the valuable and prerequisite
skills of working with and gaining insights from data.
Experiments, surveys, measurements, and observations all generate
data. These data can provide useful insights for solving problems,
guiding decisions, and formulating strategy. Progressing from
relatively unprocessed data to insight, and doing so efficiently,
reliably, and confidently, does not come easily, and yet gaining
insights from data is a fundamental skill for science as well as
many other fields and often overlooked in most textbooks of
statistics and data analysis. This accessible and engaging book
provides readers with the knowledge, experience, and confidence to
work with data and unlock essential information (insights) from
data summaries and visualisations. Based on a proven and successful
undergraduate course structure, it charts the journey from initial
question, through data preparation, import, cleaning, tidying,
checking, double-checking, manipulation, and final visualization.
These basic skills are sufficient to gain useful insights from data
without the need for any statistics; there is enough to learn about
even before delving into that world! The book focuses on gaining
insights from data via visualisations and summaries. The journey
from raw data to insights is clearly illustrated by means of a
comprehensive Workflow Demonstration in the book featuring data
collected in a real-life study and applicable to many types of
question, study, and data. Along the way, readers discover how to
efficiently and intuitively use R, RStudio, and tidyverse software,
learning from the detailed descriptions of each step in the
instructional journey to progress from the raw data to creating
elegant and informative visualisations that reveal answers to the
initial questions posed. There are an additional three
demonstrations online! Insights from Data with R is suitable for
undergraduate students and their instructors in the life and
environmental sciences seeking to harness the power of R, RStudio,
and tidyverse software to master the valuable and prerequisite
skills of working with and gaining insights from data.
R is rapidly becoming the standard software for statistical
analyses, graphical presentation of data, and programming in the
natural, physical, social, and engineering sciences. Getting
Started with R is now the go-to introductory guide for biologists
wanting to learn how to use R in their research. It teaches readers
how to import, explore, graph, and analyse data, while keeping them
focused on their ultimate goals: clearly communicating their data
in oral presentations, posters, papers, and reports. It provides a
consistent workflow for using R that is simple, efficient,
reliable, and reproducible. This second edition has been updated
and expanded while retaining the concise and engaging nature of its
predecessor, offering an accessible and fun introduction to the
packages dplyr and ggplot2 for data manipulation and graphing. It
expands the set of basic statistics considered in the first edition
to include new examples of a simple regression, a one-way and a
two-way ANOVA. Finally, it introduces a new chapter on the
generalised linear model. Getting Started with R is suitable for
undergraduates, graduate students, professional researchers, and
practitioners in the biological sciences.
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