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The present volume is a continuation of the EL.B.A. Forum Series,
which was initiated in the spring of 1995 with the first volume,
entitled From Neural Network and Biomolecular Engineering to
Bioelectronics, in which a brief outline of modem bioelectron ics
given as "the use of biological materials and biological
architectures for information processing and sensing systems and
devices down to molecular level. " The present volume highlights
the aspects of advanced biotechnology and electronics originating
from molecular manufacturing, which has been emerging as an
independent branch of research. This volume appears in a crucial
moment, when significant progress has already been made in this
strategic field and when technologies derived from it are
recognized as critical for the welfare of our society. In addition,
acknowledging to the Italian Ministry of University and Scientific
and Technological Research for launching the National Research
Program "Technologies for Bioelectronics" in 1992 and for
continuation of support of this advanced multidisciplinary
research, we would like to acknowledge the support of the National
Research Council of Italy through the "Molecular Manufacturing" CNR
Strategic Project since 1994. The significant unique role of
Technobiochip in the organization of the EL.B.A. Forums and in
bringing to light the enormous industrial potential of
bioelectronics is duly acknowledged, as well as its attraction and
support of top level scientists to the series of EL.B.A. Forums of
which this volume is part. Dr. Sergey Vakula of the EL.B.A."
nd During June 13 -June 23 1996, the 2 EL. B. A. Foundation course
on Genome, a NATO Advanced Study Institute, was held at Marcian
Marina, Isle of Elba, Italy, - sponsored by the North Atlantic
Treaty Organization and the EL. B. A. Fundation. The subject of the
course was "Genome Structure and Function" with participants
selected worldwire from 15 afferent countries. The purpose of the
course and of the resulting book is the study of DNA structure
(from the primary to the quintemary) and gene expression in the
control of cell function and cell cycle progression; the topics
were presented by top experts, covering both structural (cbwn to
the atomic resolution) and functional (cbwn to gene level) aspects.
The topics were presented by top experts and scientists active in
the field, with the goal to give an insight into modm problems of
genome study and recent ochievements in related fielm of molecular
and cell biology, genetic engineering, biochemistry and biophysics,
oncology and biotechnology. This resulting book is intenred to give
a broad perspecti ve of the current stand of these fields. The
major emphasis is towarm a reep unrerstanang of DNA structure and
function in intetphase and metaphase chromosomes, originating by
the parallel biophysical (namely NMR X-Ray and neutron scattering,
spectropolarimetry, image analysis, calorimetry) and biochemical
study conwcted on a wire range of cell systems placing the emphasis
on either the higher orrer DNA structure or gene structure and
function.
The present volume is a continuation ofthe EL.B.A. Forum Series
which was initiated in the spring of 1992 in Marciana Marina
(Italy), with the first volume entitled From Neural Networks and
Biomolecu/ar Engineering to Bioelectronics published by Plenum
Press in 1995. Bioelectronics-miginally introduced in April, 1987,
at a symposium hosted by CIREF, a research consortium among leading
high tech industries in Novara (Italy)---was later defined in two
successive consensus reports at the first (Bruxelles, 1991) and
second (Frankfurt, 1994) European Union Workshops on this widely
interdisciplinary field, as "the use ofbiological materials and
biological architectures for information processing and sens- ing
systems and devices down to molecular Ievel." lt is worth noting
that these workshops gave birth to the first European research
program on "lnterfacing Biology with Electronics" during 1996-1999,
following the !arge Programma Nazionale Ricerca on "Technologies
for Bioelectronics" launched by the ltalian Ministry ofUniversities
and Research in 1990. In autumn, 1996, with the second volume,
entitledMolecular Manufacturing, the em- phasis was placed on the
ernerging parallel area of nanotechnology, independently initiated
in Palo Alto, Zurich, Genova, Mainz, and Tokyo by various groups
(i.e., IBM, Xerox, Polo Nazionale Bioelettronica, Max Planck
Institutes), universities (i.e., Stanford, Genova, Rice, Tokyo),
and organizations (i.e., Foresight, Erato, Fondazione EL.B.A.,
Frontiers Research, MITI) of different sizes, scopes, and
latitudes.
This NATO-ASI on BIOPOLYMERS STRUCTURE AND DYNAMICS held between
22nd June 4th July 1986 at Erice (Italy) has brought together
scientists from a broad variety of biophysical disciplines -
polymer physics, biophysics and physical chemistry, structure and
dynamics of polynucleotides, proteins, and polysaccharides - to
present the current state of knowledge in their fields, both
experimental and theoretical. This Advanced Study Institute was
indeed a successfull attempt to enhance the possibility of
intersection of a number of research lines that currently are
progressing well but are still running largely in parallel with one
another: protein folding, single-polymer phase transitions, DNA
condensation into liquid crystalline-like arrays, packaging in
viruses, and polysaccharide gel formation. Although each phenomenon
is distinctive, an awareness of similarities may lead to new
ic;leas. The program has emphasized "condensed" forms of
biopolymers. We are universally confronted in biology by chain
polymers folded on themselves or interlinked in gel-like
assemblies, whether we look at the native structure of proteins,
the role of polysaccharides in connective tissue, or the genetic
apparatus. A number of lectures have been devoted to condensed
forms of DNA - closed circular supercoils, toruses, chromatin.
During May 21-June 1 1990, the eleventh course of the International
School of Pure and Applied Biostructure, a NATO Advanced Study
Institute, was held at the Ettore Majorana Center for Scientific
Culture in Erice, Italy, co-sponsored by the Italian Ministry of
Universities and of Scientific and Technological Research, the
North Atlantic Treaty Organization, the Italian National Research
Council, the Sicilian Regional Government and Technobiochip. The
subject of the course was "Molecular Basis of Human Cancer" with
participants selected worldwide from 15 different countries. The
purpose of the course was to address, in a tutorial and structural
fashion, the molecular basis of human cancer, including the
mechanism of signal transduction in mammalian cells, the genetic
mechanism of malignant transformation in man, growth factors,
hormone receptors, cell membrane and cytoskeleton, and DNA high
order structure. The course had this as its major objective and the
resulting book reflects it. The participants were exposed to a
critical evaluation of current knowledge about cancer and to some
of the key problems that remain as stumbling blocks to our eventual
understanding of this important biological and medical problem.
Through the media of formal and informal lectures, workshops,
symposia and informal discussions, a select group of interested
young and senior scientists were acquainted with many of the
aspects of human cancer.
This volume represents the fIrst of a series of proceedings of the
EL.B.A. Forum on Bioelectronics, a scientifIc discipline at the
frontiers of Advanced Electronics and Biotechnology. The name for
these forums derives not only from the place (the Isle of Elba in
Italy), where the conferences have been held every 6 months since
1991, but also from an acronym: Electronics and Biotechnology
Advanced. Bioelectronics is intended as "the use of biological
materials and biological architectures for information processing
and sensing systems and devices down to molecular level" and
focuses its attention on three major areas: I New hardware
architectures borrowed from the thorough study of brain and sensory
systems down to the molecular level, utilizing existing
semiconductor inorganic materials (both GaAs and Si) and giga-scale
integration; II Protein Engineering, especially of systems involved
in electron transfer and molecular recognition, integrated with
Metabolism and Chemical Engineering, to develop new biomaterials by
learning basic rules of macromolecular folding and self-assembly; m
Sensors, thin film and electronic devices utilizing organic
compounds and biopolymers, and by implementing nanotechnology
bottom up through manufacturing and characterization at the atomic
level.
The book addresses the most recent developments in structural and
functional proteomics underlying the recent contributions given in
these areas by our laboratory to the instrumentations, the methods
and the procedures as mutuated from the nanoscale sciences and
technologies. These developments introduced in the last few years
make now possible protein massive identification (mass spectrometry
and biomolecular arrays down to nanoamounts) and protein structural
characterization in solution and in crystals down to the atomic
scale to an extent and to a degree so far unmatched. Emphasis is
placed in the growth by nanobiofilm template of protein crystals of
any type and size from millimeter to micron, leading in combination
with microfocus synchrotron technology and atomic force microscopy
to the definition of a new field called nanocrystallography. The
few useful examples being shown, concerning yet structurally
unsolved proteins, point this very promising approach
nanotechnology-based in structural proteomics using highly focused
X-rays. This has not to be confused with the important study of
nanocrystals, both organic and inorganic, and novel diamond like
nanocomposite materials and devices having 3D protein crystals as
matrices to be equilibrated with nanoparticles/gold/silver to be
utilized in the most diversified electronic applications here also
summarized. vii Acknowledgments We are particularly grateful to
Giuseppe Zanotti at the University of Padova for his fundamental
collaboration during all the crystallographic studies.
During May 21-June 1 1990, the eleventh course of the International
School of Pure and Applied Biostructure, a NATO Advanced Study
Institute, was held at the Ettore Majorana Center for Scientific
Culture in Erice, Italy, co-sponsored by the Italian Ministry of
Universities and of Scientific and Technological Research, the
North Atlantic Treaty Organization, the Italian National Research
Council, the Sicilian Regional Government and Technobiochip. The
subject of the course was "Molecular Basis of Human Cancer" with
participants selected worldwide from 15 different countries. The
purpose of the course was to address, in a tutorial and structural
fashion, the molecular basis of human cancer, including the
mechanism of signal transduction in mammalian cells, the genetic
mechanism of malignant transformation in man, growth factors,
hormone receptors, cell membrane and cytoskeleton, and DNA high
order structure. The course had this as its major objective and the
resulting book reflects it. The participants were exposed to a
critical evaluation of current knowledge about cancer and to some
of the key problems that remain as stumbling blocks to our eventual
understanding of this important biological and medical problem.
Through the media of formal and informal lectures, workshops,
symposia and informal discussions, a select group of interested
young and senior scientists were acquainted with many of the
aspects of human cancer.
The present volume is a continuation of the EL.B.A. Forum Series,
which was initiated in the spring of 1995 with the first volume,
entitled From Neural Network and Biomolecular Engineering to
Bioelectronics, in which a brief outline of modem bioelectron ics
given as "the use of biological materials and biological
architectures for information processing and sensing systems and
devices down to molecular level. " The present volume highlights
the aspects of advanced biotechnology and electronics originating
from molecular manufacturing, which has been emerging as an
independent branch of research. This volume appears in a crucial
moment, when significant progress has already been made in this
strategic field and when technologies derived from it are
recognized as critical for the welfare of our society. In addition,
acknowledging to the Italian Ministry of University and Scientific
and Technological Research for launching the National Research
Program "Technologies for Bioelectronics" in 1992 and for
continuation of support of this advanced multidisciplinary
research, we would like to acknowledge the support of the National
Research Council of Italy through the "Molecular Manufacturing" CNR
Strategic Project since 1994. The significant unique role of
Technobiochip in the organization of the EL.B.A. Forums and in
bringing to light the enormous industrial potential of
bioelectronics is duly acknowledged, as well as its attraction and
support of top level scientists to the series of EL.B.A. Forums of
which this volume is part. Dr. Sergey Vakula of the EL.B.A."
This volume represents the fIrst of a series of proceedings of the
EL.B.A. Forum on Bioelectronics, a scientifIc discipline at the
frontiers of Advanced Electronics and Biotechnology. The name for
these forums derives not only from the place (the Isle of Elba in
Italy), where the conferences have been held every 6 months since
1991, but also from an acronym: Electronics and Biotechnology
Advanced. Bioelectronics is intended as "the use of biological
materials and biological architectures for information processing
and sensing systems and devices down to molecular level" and
focuses its attention on three major areas: I New hardware
architectures borrowed from the thorough study of brain and sensory
systems down to the molecular level, utilizing existing
semiconductor inorganic materials (both GaAs and Si) and giga-scale
integration; II Protein Engineering, especially of systems involved
in electron transfer and molecular recognition, integrated with
Metabolism and Chemical Engineering, to develop new biomaterials by
learning basic rules of macromolecular folding and self-assembly; m
Sensors, thin film and electronic devices utilizing organic
compounds and biopolymers, and by implementing nanotechnology
bottom up through manufacturing and characterization at the atomic
level.
nd During June 13 -June 23 1996, the 2 EL. B. A. Foundation course
on Genome, a NATO Advanced Study Institute, was held at Marcian
Marina, Isle of Elba, Italy, - sponsored by the North Atlantic
Treaty Organization and the EL. B. A. Fundation. The subject of the
course was "Genome Structure and Function" with participants
selected worldwire from 15 afferent countries. The purpose of the
course and of the resulting book is the study of DNA structure
(from the primary to the quintemary) and gene expression in the
control of cell function and cell cycle progression; the topics
were presented by top experts, covering both structural (cbwn to
the atomic resolution) and functional (cbwn to gene level) aspects.
The topics were presented by top experts and scientists active in
the field, with the goal to give an insight into modm problems of
genome study and recent ochievements in related fielm of molecular
and cell biology, genetic engineering, biochemistry and biophysics,
oncology and biotechnology. This resulting book is intenred to give
a broad perspecti ve of the current stand of these fields. The
major emphasis is towarm a reep unrerstanang of DNA structure and
function in intetphase and metaphase chromosomes, originating by
the parallel biophysical (namely NMR X-Ray and neutron scattering,
spectropolarimetry, image analysis, calorimetry) and biochemical
study conwcted on a wire range of cell systems placing the emphasis
on either the higher orrer DNA structure or gene structure and
function.
The book addresses the most recent developments in structural and
functional proteomics underlying the recent contributions given in
these areas by our laboratory to the instrumentations, the methods
and the procedures as mutuated from the nanoscale sciences and
technologies. These developments introduced in the last few years
make now possible protein massive identification (mass spectrometry
and biomolecular arrays down to nanoamounts) and protein structural
characterization in solution and in crystals down to the atomic
scale to an extent and to a degree so far unmatched. Emphasis is
placed in the growth by nanobiofilm template of protein crystals of
any type and size from millimeter to micron, leading in combination
with microfocus synchrotron technology and atomic force microscopy
to the definition of a new field called nanocrystallography. The
few useful examples being shown, concerning yet structurally
unsolved proteins, point this very promising approach
nanotechnology-based in structural proteomics using highly focused
X-rays. This has not to be confused with the important study of
nanocrystals, both organic and inorganic, and novel diamond like
nanocomposite materials and devices having 3D protein crystals as
matrices to be equilibrated with nanoparticles/gold/silver to be
utilized in the most diversified electronic applications here also
summarized. vii Acknowledgments We are particularly grateful to
Giuseppe Zanotti at the University of Padova for his fundamental
collaboration during all the crystallographic studies.
The present volume is a continuation ofthe EL.B.A. Forum Series
which was initiated in the spring of 1992 in Marciana Marina
(Italy), with the first volume entitled From Neural Networks and
Biomolecu/ar Engineering to Bioelectronics published by Plenum
Press in 1995. Bioelectronics-miginally introduced in April, 1987,
at a symposium hosted by CIREF, a research consortium among leading
high tech industries in Novara (Italy)---was later defined in two
successive consensus reports at the first (Bruxelles, 1991) and
second (Frankfurt, 1994) European Union Workshops on this widely
interdisciplinary field, as "the use ofbiological materials and
biological architectures for information processing and sens- ing
systems and devices down to molecular Ievel." lt is worth noting
that these workshops gave birth to the first European research
program on "lnterfacing Biology with Electronics" during 1996-1999,
following the !arge Programma Nazionale Ricerca on "Technologies
for Bioelectronics" launched by the ltalian Ministry ofUniversities
and Research in 1990. In autumn, 1996, with the second volume,
entitledMolecular Manufacturing, the em- phasis was placed on the
ernerging parallel area of nanotechnology, independently initiated
in Palo Alto, Zurich, Genova, Mainz, and Tokyo by various groups
(i.e., IBM, Xerox, Polo Nazionale Bioelettronica, Max Planck
Institutes), universities (i.e., Stanford, Genova, Rice, Tokyo),
and organizations (i.e., Foresight, Erato, Fondazione EL.B.A.,
Frontiers Research, MITI) of different sizes, scopes, and
latitudes.
This NATO-ASI on BIOPOLYMERS STRUCTURE AND DYNAMICS held between
22nd June 4th July 1986 at Erice (Italy) has brought together
scientists from a broad variety of biophysical disciplines -
polymer physics, biophysics and physical chemistry, structure and
dynamics of polynucleotides, proteins, and polysaccharides - to
present the current state of knowledge in their fields, both
experimental and theoretical. This Advanced Study Institute was
indeed a successfull attempt to enhance the possibility of
intersection of a number of research lines that currently are
progressing well but are still running largely in parallel with one
another: protein folding, single-polymer phase transitions, DNA
condensation into liquid crystalline-like arrays, packaging in
viruses, and polysaccharide gel formation. Although each phenomenon
is distinctive, an awareness of similarities may lead to new
ic;leas. The program has emphasized "condensed" forms of
biopolymers. We are universally confronted in biology by chain
polymers folded on themselves or interlinked in gel-like
assemblies, whether we look at the native structure of proteins,
the role of polysaccharides in connective tissue, or the genetic
apparatus. A number of lectures have been devoted to condensed
forms of DNA - closed circular supercoils, toruses, chromatin.
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