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Mastering Python for Bioinformatics - How to Write Flexible, Documented, Tested Python Code for Research Computing (Paperback)
Loot Price: R1,661
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Mastering Python for Bioinformatics - How to Write Flexible, Documented, Tested Python Code for Research Computing (Paperback)
Expected to ship within 12 - 17 working days
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Life scientists today urgently need training in bioinformatics
skills. Too many bioinformatics programs are poorly written and
barely maintained--usually by students and researchers who've never
learned basic programming skills. This practical guide shows
postdoc bioinformatics professionals and students how to exploit
the best parts of Python to solve problems in biology while
creating documented, tested, reproducible software. Ken
Youens-Clark, author of Tiny Python Projects (Manning),
demonstrates not only how to write effective Python code but also
how to use tests to write and refactor scientific programs. You'll
learn the latest Python features and tools - including linters,
formatters, type checkers, and tests - to create documented and
tested programs. You'll also tackle 14 challenges in Rosalind, a
problem-solving platform for learning bioinformatics and
programming. Create command-line Python programs to document and
validate parameters Write tests to verify refactor programs and
confirm they're correct Address bioinformatics ideas using Python
data structures and modules such as Biopython Create reproducible
shortcuts and workflows using makefiles Parse essential
bioinformatics file formats such as FASTA and FASTQ Find patterns
of text using regular expressions Use higher-order functions in
Python like filter(), map(), and reduce()
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