In this superb topology text, the readers not only learn about knot theory, 3-dimensional manifolds, and the topology of embedded graphs, but also their role in understanding molecular structures. Most results described in the text are motivated by the questions of chemists or molecular biologists, though they often go beyond answering the original question asked. No specific mathematical or chemical prerequisites are required. The text is enhanced by nearly 200 illustrations and 100 exercises. With this fascinating book, undergraduate mathematics students escape the world of pure abstract theory and enter that of real molecules, while chemists and biologists find simple and clear but rigorous definitions of mathematical concepts they handle intuitively in their work.

This book contains the proceedings of the AMS Special Session on Topology of Biopolymers, held from April 21-22, 2018, at Northeastern University, Boston, MA. The papers cover recent results on the topology and geometry of DNA and protein knotting using techniques from knot theory, spatial graph theory, differential geometry, molecular simulations, and laboratory experimentation. They include current work on the following topics: the density and supercoiling of DNA minicircles; the dependence of DNA geometry on its amino acid sequence; random models of DNA knotting; topological models of DNA replication and recombination; theories of how and why proteins knot; topological and geometric approaches to identifying entanglements in proteins; and topological and geometric techniques to predict protein folding rates. All of the articles are written as surveys intended for a broad interdisciplinary audience with a minimum of prerequisites. In addition to being a useful reference for experts, this book also provides an excellent introduction to the fast-moving field of topology and geometry of biopolymers.

In this superb topology text, the readers not only learn about knot theory, 3-dimensional manifolds, and the topology of embedded graphs, but also their role in understanding molecular structures. Most results described in the text are motivated by the questions of chemists or molecular biologists, though they often go beyond answering the original question asked. No specific mathematical or chemical prerequisites are required. The text is enhanced by nearly 200 illustrations and 100 exercises. With this fascinating book, undergraduate mathematics students escape the world of pure abstract theory and enter that of real molecules, while chemists and biologists find simple and clear but rigorous definitions of mathematical concepts they handle intuitively in their work.

This book is an elementary introduction to geometric topology and its applications to chemistry, molecular biology, and cosmology. It does not assume any mathematical or scientific background, sophistication, or even motivation to study mathematics. It is meant to be fun and engaging while drawing students in to learn about fundamental topological and geometric ideas. Though the book can be read and enjoyed by nonmathematicians, college students, or even eager high school students, it is intended to be used as an undergraduate textbook. The book is divided into three parts corresponding to the three areas referred to in the title. Part 1 develops techniques that enable two- and three-dimensional creatures to visualize possible shapes for their universe and to use topological and geometric properties to distinguish one such space from another. Part 2 is an introduction to knot theory with an emphasis on invariants. Part 3 presents applications of topology and geometry to molecular symmetries, DNA, and proteins. Each chapter ends with exercises that allow for better understanding of the material. The style of the book is informal and lively. Though all of the definitions and theorems are explicitly stated, they are given in an intuitive rather than a rigorous form, with several hundreds of figures illustrating the exposition. This allows students to develop intuition about topology and geometry without getting bogged down in technical details.