Gives a holistic approach to machine learning and data science applications, from design to deployment and quality assurance, as an overarching cyclical process; Bridges machine learning and software engineering to build a shared set of best practices useful to both academia and the industry; Discusses deployment options for different types of models and data to help practitioners reason and make informed choices. Emphasizes the role of coding standards and software architecture alongside statistical rigor to implement reproducible and scalable machine learning models Key Features: A complete guide to software engineering for machine learning and data science applications, from choosing the right hardware to analysing algorithms and designing scalable architectures. Surveys the state of the art of the software and frameworks used to build and run machine learning applications, comparing and contrasting their trade-offs. Comes with a complete case study in natural language understanding which illustrates the principles and the tools covered in the book. Code available from GitHub. Provides a multi-disciplinary view of how traditional software learning practices can be integrated with the workflows of domain experts and the unique characteristics of software in which data play a central role.

Explains the material step-by-step starting from meaningful examples Steps detailed with R code in the spirit of reproducible research Real world data analyses from a Science paper reproduced and explained in detail Examples span a variety of fields across social and life sciences Overview of available software in and outside R

Gives a holistic approach to machine learning and data science applications, from design to deployment and quality assurance, as an overarching cyclical process; Bridges machine learning and software engineering to build a shared set of best practices useful to both academia and the industry; Discusses deployment options for different types of models and data to help practitioners reason and make informed choices. Emphasizes the role of coding standards and software architecture alongside statistical rigor to implement reproducible and scalable machine learning models Key Features: A complete guide to software engineering for machine learning and data science applications, from choosing the right hardware to analysing algorithms and designing scalable architectures. Surveys the state of the art of the software and frameworks used to build and run machine learning applications, comparing and contrasting their trade-offs. Comes with a complete case study in natural language understanding which illustrates the principles and the tools covered in the book. Code available from GitHub. Provides a multi-disciplinary view of how traditional software learning practices can be integrated with the workflows of domain experts and the unique characteristics of software in which data play a central role.

Bayesian Networks in R with Applications in Systems Biology is unique as it introduces the reader to the essential concepts in Bayesian network modeling and inference in conjunction with examples in the open-source statistical environment R. The level of sophistication is also gradually increased across the chapters with exercises and solutions for enhanced understanding for hands-on experimentation of the theory and concepts. The application focuses on systems biology with emphasis on modeling pathways and signaling mechanisms from high-throughput molecular data. Bayesian networks have proven to be especially useful abstractions in this regard. Their usefulness is especially exemplified by their ability to discover new associations in addition to validating known ones across the molecules of interest. It is also expected that the prevalence of publicly available high-throughput biological data sets may encourage the audience to explore investigating novel paradigms using the approaches presented in the book.