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The stability of the DNA double helix is contingent on fine-tuning
a number of physicochemical control parameters. Varying any one of
them leads to separation of the two strands, in what constitutes a
rare physical example of a thermodynamic phase transition in a
one-dimensional system. The present book aims at providing a
self-contained account of the statistical physics of cooperative
processes in DNA, e.g. thermal and mechanical dissociation,
force-induced melting, equilibria of hairpin-like secondary
structures. In addition, the book presents some fundamental aspects
of DNA elasticity, as observed in key experiments, old and new. The
latter include some recently published scattering data on
apparently soft, short DNA chains and their interpretation in terms
of local structural defects (permanent bends, 'kinky DNA', after
the original Crick-Klug hypothesis).The development of mathematical
models used (Kratky-Porod polymer chain, Poland-Scheraga and
Peyrard-Bishop-Dauxois models of DNA melting) emphasizes the use of
realistic parameters and the relevance of practical numerical
methods for comparing with experimental data. Accordingly, a large
number of specially produced figures has been included.The
presentation is at the level of an advanced undergraduate or
introductory graduate course. An extra chapter provides the
necessary mathematical background on elasticity of model polymer
chains.
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