Emphasizing the search for patterns within and between biological sequences, trees, and graphs, Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R shows how combinatorial pattern matching algorithms can solve computational biology problems that arise in the analysis of genomic, transcriptomic, proteomic, metabolomic, and interactomic data. It implements the algorithms in Perl and R, two widely used scripting languages in computational biology. The book provides a well-rounded explanation of traditional issues as well as an up-to-date account of more recent developments, such as graph similarity and search. It is organized around the specific algorithmic problems that arise when dealing with structures that are commonly found in computational biology, including biological sequences, trees, and graphs. For each of these structures, the author makes a clear distinction between problems that arise in the analysis of one structure and in the comparative analysis of two or more structures. He also presents phylogenetic trees and networks as examples of trees and graphs in computational biology. This book supplies a comprehensive view of the whole field of combinatorial pattern matching from a computational biology perspective. Along with thorough discussions of each biological problem, it includes detailed algorithmic solutions in pseudo-code, full Perl and R implementation, and pointers to other software, such as those on CPAN and CRAN.

This open access book focuses on processing, modeling, and visualization of anisotropy information, which are often addressed by employing sophisticated mathematical constructs such as tensors and other higher-order descriptors. It also discusses adaptations of such constructs to problems encountered in seemingly dissimilar areas of medical imaging, physical sciences, and engineering. Featuring original research contributions as well as insightful reviews for scientists interested in handling anisotropy information, it covers topics such as pertinent geometric and algebraic properties of tensors and tensor fields, challenges faced in processing and visualizing different types of data, statistical techniques for data processing, and specific applications like mapping white-matter fiber tracts in the brain. The book helps readers grasp the current challenges in the field and provides information on the techniques devised to address them. Further, it facilitates the transfer of knowledge between different disciplines in order to advance the research frontiers in these areas. This multidisciplinary book presents, in part, the outcomes of the seventh in a series of Dagstuhl seminars devoted to visualization and processing of tensor fields and higher-order descriptors, which was held in Dagstuhl, Germany, on October 28-November 2, 2018.

This unique book provides the first introduction to crystal base theory from the combinatorial point of view. Crystal base theory was developed by Kashiwara and Lusztig from the perspective of quantum groups. Its power comes from the fact that it addresses many questions in representation theory and mathematical physics by combinatorial means. This book approaches the subject directly from combinatorics, building crystals through local axioms (based on ideas by Stembridge) and virtual crystals. It also emphasizes parallels between the representation theory of the symmetric and general linear groups and phenomena in combinatorics. The combinatorial approach is linked to representation theory through the analysis of Demazure crystals. The relationship of crystals to tropical geometry is also explained.

This unique book provides the first introduction to crystal base theory from the combinatorial point of view. Crystal base theory was developed by Kashiwara and Lusztig from the perspective of quantum groups. Its power comes from the fact that it addresses many questions in representation theory and mathematical physics by combinatorial means. This book approaches the subject directly from combinatorics, building crystals through local axioms (based on ideas by Stembridge) and virtual crystals. It also emphasizes parallels between the representation theory of the symmetric and general linear groups and phenomena in combinatorics. The combinatorial approach is linked to representation theory through the analysis of Demazure crystals. The relationship of crystals to tropical geometry is also explained.

Handbook of Mathematical Induction: Theory and Applications shows how to find and write proofs via mathematical induction. This comprehensive book covers the theory, the structure of the written proof, all standard exercises, and hundreds of application examples from nearly every area of mathematics. In the first part of the book, the author discusses different inductive techniques, including well-ordered sets, basic mathematical induction, strong induction, double induction, infinite descent, downward induction, and several variants. He then introduces ordinals and cardinals, transfinite induction, the axiom of choice, Zorn's lemma, empirical induction, and fallacies and induction. He also explains how to write inductive proofs. The next part contains more than 750 exercises that highlight the levels of difficulty of an inductive proof, the variety of inductive techniques available, and the scope of results provable by mathematical induction. Each self-contained chapter in this section includes the necessary definitions, theory, and notation and covers a range of theorems and problems, from fundamental to very specialized. The final part presents either solutions or hints to the exercises. Slightly longer than what is found in most texts, these solutions provide complete details for every step of the problem-solving process.

Handbook of Product Graphs, Second Edition examines the dichotomy between the structure of products and their subgraphs. It also features the design of efficient algorithms that recognize products and their subgraphs and explores the relationship between graph parameters of the product and factors. Extensively revised and expanded, the handbook presents full proofs of many important results as well as up-to-date research and conjectures. Results and Algorithms New to the Second Edition: Cancellation results A quadratic recognition algorithm for partial cubes Results on the strong isometric dimension Computing the Wiener index via canonical isometric embedding Connectivity results A fractional version of Hedetniemi's conjecture Results on the independence number of Cartesian powers of vertex-transitive graphs Verification of Vizing's conjecture for chordal graphs Results on minimum cycle bases Numerous selected recent results, such as complete minors and nowhere-zero flows The second edition of this classic handbook provides a thorough introduction to the subject and an extensive survey of the field. The first three parts of the book cover graph products in detail. The authors discuss algebraic properties, such as factorization and cancellation, and explore interesting and important classes of subgraphs. The fourth part presents algorithms for the recognition of products and related classes of graphs. The final two parts focus on graph invariants and infinite, directed, and product-like graphs. Sample implementations of selected algorithms and other information are available on the book's website, which can be reached via the authors' home pages.

This book highlights recent developments in multidimensional data visualization, presenting both new methods and modifications on classic techniques. Throughout the book, various applications of multidimensional data visualization are presented including its uses in social sciences (economy, education, politics, psychology), environmetrics, and medicine (ophthalmology, sport medicine, pharmacology, sleep medicine).

The book provides recent research results in optimization-based visualization. Evolutionary algorithms and a two-level optimization method, based on combinatorial optimization and quadratic programming, are analyzed in detail. The performance of these algorithms and the development of parallel versions is discussed.

The encorporation of new visualization techniques to improve the capabilies of artificial neural networks (self-organizing maps, feed-forward networks) is also discussed.

The book includes over 100 detailed images presenting examples of the different visualization techniques that are presented.

This book is intended for scientists and researchers in any field of study where complex and multidimensional data must be represented visually.

This is a textbook for an introductory combinatorics course lasting one or two semesters. An extensive list of problems, ranging from routine exercises to research questions, is included. In each section, there are also exercises that contain material not explicitly discussed in the preceding text, so as to provide instructors with extra choices if they want to shift the emphasis of their course.Just as with the first three editions, the new edition walks the reader through the classic parts of combinatorial enumeration and graph theory, while also discussing some recent progress in the area: on the one hand, providing material that will help students learn the basic techniques, and on the other hand, showing that some questions at the forefront of research are comprehensible and accessible to the talented and hardworking undergraduate. The basic topics discussed are: the twelvefold way, cycles in permutations, the formula of inclusion and exclusion, the notion of graphs and trees, matchings, Eulerian and Hamiltonian cycles, and planar graphs.New to this edition are the Quick Check exercises at the end of each section. In all, the new edition contains about 240 new exercises. Extra examples were added to some sections where readers asked for them.The selected advanced topics are: Ramsey theory, pattern avoidance, the probabilistic method, partially ordered sets, the theory of designs, enumeration under group action, generating functions of labeled and unlabeled structures and algorithms and complexity.The book encourages students to learn more combinatorics, provides them with a not only useful but also enjoyable and engaging reading.The Solution Manual is available upon request for all instructors who adopt this book as a course text. Please send your request to [email protected] previous edition of this textbook has been adopted at various schools including UCLA, MIT, University of Michigan, and Swarthmore College. It was also translated into Korean.

The volume is a collection of 20 refereed articles written in connection with lectures presented at the 12th International Conference on Finite Fields and Their Applications ('Fq12') at Skidmore College in Saratoga Springs, NY in July 2015. Finite fields are central to modern cryptography and secure digital communication, and hence must evolve rapidly to keep pace with new technologies. Topics in this volume include cryptography, coding theory, structure of finite fields, algorithms, curves over finite fields, and further applications.Contributors will include: Antoine Joux (Fondation Partenariale de l'UPMC, France); Gary Mullen (Penn State University, USA); Gohar Kyureghyan (Otto-von-Guericke Universitat, Germany); Gary McGuire (University College Dublin, Ireland); Michel Lavrauw (Universita degli Studi di Padova, Italy); Kirsten Eisentraeger (Penn State University, USA); Renate Scheidler (University of Calgary, Canada); Michael Zieve (University of Michigan, USA).

The second edition of this popular book presents the theory of graphs from an algorithmic viewpoint. The authors present the graph theory in a rigorous, but informal style and cover most of the main areas of graph theory. The ideas of surface topology are presented from an intuitive point of view. We have also included a discussion on linear programming that emphasizes problems in graph theory. The text is suitable for students in computer science or mathematics programs.

This book introduces oriented version of metrics and cuts and their multidimensional analogues, as well as partial metrics and weighted metrics. It is a follow-up of Geometry of Cuts and Metrics by Deza and Laurent which presents rich theory of classical binary and symmetric objects - metrics and cuts.Many research publications on this subject are devoted to different special aspects of the theory of generalized metrics. However, they are disconnected one from other, often written in different mathematical language, consider the same objects from different points of view without analysis of possible connections, etc. In this book we will construct full theory of main classes of finite generalized metrics and their polyhedral aspects.

These notes were first used in an introductory course team taught by the authors at Appalachian State University to advanced undergraduates and beginning graduates. The text was written with four pedagogical goals in mind: offer a variety of topics in one course, get to the main themes and tools as efficiently as possible, show the relationships between the different topics, and include recent results to convince students that mathematics is a living discipline.

In China, lots of excellent students who are good at maths takes an active part in various maths contests and the best six senior high school students will be selected to form the IMO National Team to compete in the International Mathematical Olympiad. In the past ten years China's IMO Team has achieved outstanding results - they have won the first place almost every year.The author is one of the coaches of China's IMO National Team, whose students have won many gold medals many times in IMO.This book is part of the Mathematical Olympiad Series which discusses several aspects related to maths contests, such as algebra, number theory, combinatorics, graph theory and geometry. The book elaborates on methods of discrete extremization, such as inequality control, repeated extremum, partial adjustment, exploiting symmetry, polishing transform, space estimates, etc.

Combinatorics as a branch of mathematics studies the arts of counting. Enumeration occupies the foundation of combinatorics with a large range of applications not only in mathematics itself but also in many other disciplines. It is too broad a task to write a book to show the deep development in every corner from this aspect. This monograph is intended to provide a unified theory for those related to the enumeration of maps. For enumerating maps the first thing we have to know is the sym metry of a map. Or in other words, we have to know its automorphism group. In general, this is an interesting, complicated, and difficult problem. In order to do this, the first problem we meet is how to make a map considered without symmetry. Since the beginning of sixties when Tutte found a way of rooting on a map, the problem has been solved. This forms the basis of the enumerative theory of maps. As soon as the problem without considering the symmetry is solved for one kind of map, the general problem with symmetry can always, in principle, be solved from what we have known about the automorphism of a polyhedron, a synonym for a map, which can be determined efficiently according to another monograph of the present author Liu58]."

I. Introduction.- 1. Set Systems and Languages.- 2. Graphs, Partially Ordered Sets and Lattices.- II. Abstract Linear Dependence - Matroids.- 1. Matroid Axiomatizations.- 2. Matroids and Optimization.- 3. Operations on Matroids.- 4. Submodular Functions and Polymatroids.- III. Abstract Convexity - Antimatroids.- 1. Convex Geometries and Shelling Processes.- 2. Examples of Antimatroids.- 3. Circuits and Paths.- 4. Helly's Theorem and Relatives.- 5. Ramsey-type Results.- 6. Representations of Antimatroids.- IV. General Exchange Structures - Greedoids.- 1. Basic Facts.- 2. Examples of Greedoids.- V. Structural Properties.- 1. Rank Function.- 2. Closure Operators.- 3. Rank and Closure Feasibility.- 4. Minors and Extensions.- 5. Interval Greedoids.- VI. Further Structural Properties.- 1. Lattices Associated with Greedoids.- 2. Connectivity in Greedoids.- VII. Local Poset Greedoids.- 1. Polymatroid Greedoids.- 2. Local Properties of Local Poset Greedoids.- 3. Excluded Minors for Local Posets.- 4. Paths in Local Poset Greedoids.- 5. Excluded Minors for Undirected Branchings Greedoids.- VIII. Greedoids on Partially Ordered Sets.- 1. Supermatroids.- 2. Ordered Geometries.- 3. Characterization of Ordered Geometries.- 4. Minimal and Maximal Ordered Geometries.- IX. Intersection, Slimming and Trimming.- 1. Intersections of Greedoids and Antimatroids.- 2. The Meet of a Matroid and an Antimatroid.- 3. Balanced Interval Greedoids.- 4. Exchange Systems and Gauss Greedoids.- X. Transposition Greedoids.- 1. The Transposition Property.- 2. Applications of the Transposition Property.- 3. Simplicial Elimination.- XI. Optimization in Greedoids.- 1. General Objective Functions.- 2. Linear Functions.- 3. Polyhedral Descriptions.- 4. Transversals and Partial Transversals.- 5. Intersection of Supermatroids.- XII. Topological Results for Greedoids.- 1. A Brief Review of Topological Prerequisites.- 2. Shellability of Greedoids and the Partial Tutte Polynomial.- 3. Homotopy Properties of Greedoids.- References.- Notation Index.- Author Index.- Inclusion Chart (inside the back cover).

This book is a unique work which provides an in-depth exploration into the mathematical expertise, philosophy, and knowledge of H W Gould. It is written in a style that is accessible to the reader with basic mathematical knowledge, and yet contains material that will be of interest to the specialist in enumerative combinatorics. This book begins with exposition on the combinatorial and algebraic techniques that Professor Gould uses for proving binomial identities. These techniques are then applied to develop formulas which relate Stirling numbers of the second kind to Stirling numbers of the first kind. Professor Gould's techniques also provide connections between both types of Stirling numbers and Bernoulli numbers. Professor Gould believes his research success comes from his intuition on how to discover combinatorial identities.This book will appeal to a wide audience and may be used either as lecture notes for a beginning graduate level combinatorics class, or as a research supplement for the specialist in enumerative combinatorics.

Representation Theory of Symmetric Groups is the most up-to-date abstract algebra book on the subject of symmetric groups and representation theory. Utilizing new research and results, this book can be studied from a combinatorial, algorithmic or algebraic viewpoint. This book is an excellent way of introducing today's students to representation theory of the symmetric groups, namely classical theory. From there, the book explains how the theory can be extended to other related combinatorial algebras like the Iwahori-Hecke algebra. In a clear and concise manner, the author presents the case that most calculations on symmetric group can be performed by utilizing appropriate algebras of functions. Thus, the book explains how some Hopf algebras (symmetric functions and generalizations) can be used to encode most of the combinatorial properties of the representations of symmetric groups. Overall, the book is an innovative introduction to representation theory of symmetric groups for graduate students and researchers seeking new ways of thought.

The second edition of this popular book presents the theory of graphs from an algorithmic viewpoint. The authors present the graph theory in a rigorous, but informal style and cover most of the main areas of graph theory. The ideas of surface topology are presented from an intuitive point of view. We have also included a discussion on linear programming that emphasizes problems in graph theory. The text is suitable for students in computer science or mathematics programs.

Eschewing the often standard dry and static writing style of traditional textbooks, Discrete Encounters provides a refreshing approach to discrete mathematics. The author blends traditional course topics and applications with historical context, pop culture references, and open problems. This book focuses on the historical development of the subject and provides fascinating details of the people behind the mathematics, along with their motivations, deepening readers' appreciation of mathematics. This unique book covers many of the same topics found in traditional textbooks, but does so in an alternative, entertaining style that better captures readers' attention. In addition to standard discrete mathematics material, the author shows the interplay between the discrete and the continuous and includes high-interest topics such as fractals, chaos theory, cellular automata, money-saving financial mathematics, and much more. Not only will readers gain a greater understanding of mathematics and its culture, they will also be encouraged to further explore the subject. Long lists of references at the end of each chapter make this easy. Highlights: Features fascinating historical context to motivate readers Text includes numerous pop culture references throughout to provide a more engaging reading experience Its unique topic structure presents a fresh approach The text's narrative style is that of a popular book, not a dry textbook Includes the work of many living mathematicians Its multidisciplinary approach makes it ideal for liberal arts mathematics classes, leisure reading, or as a reference for professors looking to supplement traditional courses Contains many open problems Profusely illustrated

Introduction to Chemical Graph Theory is a concise introduction to the main topics and techniques in chemical graph theory, specifically the theory of topological indices. These include distance-based, degree-based, and counting-based indices. The book covers some of the most commonly used mathematical approaches in the subject. It is also written with the knowledge that chemical graph theory has many connections to different branches of graph theory (such as extremal graph theory, spectral graph theory). The authors wrote the book in an appealing way that attracts people to chemical graph theory. In doing so, the book is an excellent playground and general reference text on the subject, especially for young mathematicians with a special interest in graph theory. Key Features: A concise introduction to topological indices of graph theory Appealing to specialists and non-specialists alike Provides many techniques from current research About the Authors: Stephan Wagner grew up in Graz (Austria), where he also received his PhD from Graz University of Technology in 2006. Shortly afterwards, he moved to South Africa, where he started his career at Stellenbosch University as a lecturer in January 2007. His research interests lie mostly in combinatorics and related areas, including connections to other scientific fields such as physics, chemistry and computer science. Hua Wang received his PhD from University of South Carolina in 2005. He held a Visiting Research Assistant Professor position at University of Florida before joining Georgia Southern University in 2008. His research interests include combinatorics and graph theory, elementary number theory, and related problems

Additive Combinatorics: A Menu of Research Problems is the first book of its kind to provide readers with an opportunity to actively explore the relatively new field of additive combinatorics. The author has written the book specifically for students of any background and proficiency level, from beginners to advanced researchers. It features an extensive menu of research projects that are challenging and engaging at many different levels. The questions are new and unsolved, incrementally attainable, and designed to be approachable with various methods. The book is divided into five parts which are compared to a meal. The first part is called Ingredients and includes relevant background information about number theory, combinatorics, and group theory. The second part, Appetizers, introduces readers to the book's main subject through samples. The third part, Sides, covers auxiliary functions that appear throughout different chapters. The book's main course, so to speak, is Entrees: it thoroughly investigates a large variety of questions in additive combinatorics by discussing what is already known about them and what remains unsolved. These include maximum and minimum sumset size, spanning sets, critical numbers, and so on. The final part is Pudding and features numerous proofs and results, many of which have never been published. Features: The first book of its kind to explore the subject Students of any level can use the book as the basis for research projects The text moves gradually through five distinct parts, which is suitable both for beginners without prerequisites and for more advanced students Includes extensive proofs of propositions and theorems Each of the introductory chapters contains numerous exercises to help readers

Crossing Numbers of Graphs is the first book devoted to the crossing number, an increasingly popular object of study with surprising connections. The field has matured into a large body of work, which includes identifiable core results and techniques. The book presents a wide variety of ideas and techniques in topological graph theory, discrete geometry, and computer science. The first part of the text deals with traditional crossing number, crossing number values, crossing lemma, related parameters, computational complexity, and algorithms. The second part includes the rich history of alternative crossing numbers, the rectilinear crossing number, the pair crossing number, and the independent odd crossing number.It also includes applications of the crossing number outside topological graph theory. Aimed at graduate students and professionals in both mathematics and computer science The first book of its kind devoted to the topic Authored by a noted authority in crossing numbers

Introduction to Radar Analysis, Second Edition is a major revision of the popular textbook. It is written within the context of communication theory as well as the theory of signals and noise. By emphasizing principles and fundamentals, the textbook serves as a vital source for students and engineers. Part I bridges the gap between communication, signal analysis, and radar. Topics include modulation techniques and associated Continuous Wave (CW) and pulsed radar systems. Part II is devoted to radar signal processing and pulse compression techniques. Part III presents special topics in radar systems including radar detection, radar clutter, target tracking, phased arrays, and Synthetic Aperture Radar (SAR). Many new exercise are included and the author provides comprehensive easy-to-follow mathematical derivations of all key equations and formulas. The author has worked extensively for the U.S. Army, the U.S. Space and Missile Command, and other military agencies. This is not just a textbook for senior level and graduates students, but a valuable tool for practicing radar engineers. Features Authored by a leading industry radar professional. Comprehensive up-to-date coverage of radar systems analysis issues. Easy to follow mathematical derivations of all equations and formulas Numerous graphical plots and table format outputs. One part of the book is dedicated to radar waveforms and radar signal processing.

Volume of geometric objects plays an important role in applied and theoretical mathematics. This is particularly true in the relatively new branch of discrete geometry, where volume is often used to find new topics for research. Volumetric Discrete Geometry demonstrates the recent aspects of volume, introduces problems related to it, and presents methods to apply it to other geometric problems. Part I of the text consists of survey chapters of selected topics on volume and is suitable for advanced undergraduate students. Part II has chapters of selected proofs of theorems stated in Part I and is oriented for graduate level students wishing to learn about the latest research on the topic. Chapters can be studied independently from each other. Provides a list of 30 open problems to promote research Features more than 60 research exercises Ideally suited for researchers and students of combinatorics, geometry and discrete mathematics

Graph Searching Games and Probabilistic Methods is the first book that focuses on the intersection of graph searching games and probabilistic methods. The book explores various applications of these powerful mathematical tools to games and processes such as Cops and Robbers, Zombie and Survivors, and Firefighting. Written in an engaging style, the book is accessible to a wide audience including mathematicians and computer scientists. Readers will find that the book provides state-of-the-art results, techniques, and directions in graph searching games, especially from the point of view of probabilistic methods. The authors describe three directions while providing numerous examples, which include: * Playing a deterministic game on a random board. * Players making random moves. * Probabilistic methods used to analyze a deterministic game.