|
Showing 1 - 4 of
4 matches in All Departments
The LNCS journal Transactions on Computational Systems Biology is
devoted to inter- and multidisciplinary research in the fields of
computer science and life sciences and supports a paradigmatic
shift in the techniques from computer and information science to
cope with the new challenges arising from the systems oriented
point of view of biological phenomena. This, the 13th Transactions
on Computational Systems Biology volume, guest edited by
Ralph-Johan Back, Ion Petre, and Erik de Vink, focuses on
Computational Models for Cell Processes and features a number of
carefully selected and enhanced contributions initially presented
at the CompMod workshop, which took place in Eindhoven, The
Netherlands, in November 2009. From different points of view and
following various approaches, the papers cover a wide range of
topics in systems biology, addressing the dynamics and the
computational principles of this emerging field.
Biology is witnessing a transformation towards a more quantitative
science, based on the major technological breakthroughs of the past
decade. In this transformation, biology is incorporating
mathematical modeling techniques and computational approaches
towards numerical simulations, model analysis, and
quantitativepredictions.An importantgoalis to
formalizeandanalyzethe ev- changing inter-connections between
components (often on di?erent time and space scales), their
in?uence on one another, regulatory patterns, alternative pathways,
etc. Formal reasoning rather than empirical observations is the
main driving force in this new type of biological research.At the
same time, computer science and applied mathematics are faced with
considerable methodological challenges in handling an unprecedented
level of concurrency, stochastic e?ects,
amixoflargeandsmallpopulations,combinatorialexplosionsinthe
statespace, model re?nement, and model (de)composition, etc.
ThisspecialissueofTransactionsonComputationalSystemsBiologyonC-
putationalModels forCellProcessesisbasedonaworkshopwith thesamename
that took place in Turku, Finland, on May 27, 2008. The workshop
was or- nized as a satellite event of the 15th International
Symposium on Formal Me- ods that took place in Turku in the period
May 28-31, 2008. This special issue however had an open call for
paper submissions, with a separate peer-review process. The
accepted papers span an interesting mix of approaches to systems
biology, ranging from quantitative to qualitative techniques, from
continuous to discrete mathematics, from deterministic to
stochastic methods, from compu- tional models for biology to
computing paradigms inspired by biology. Overall, they give a good
glimpse into some of the exciting current research avenues in
computational systems biology.
Much current research in computer science is concerned with two questions: is a program correct? And how can we improve a correct program preserving correctness? This latter question is known as the refinement of programs and the purpose of this book is to consider these questions in a formal setting. In fact, correctness turns out to be a special case of refinement and so the focus is on refinement. Although a reasonable background knowledge is assumed from mathematics and CS, the book is a self-contained introduction suitable for graduate students and researchers coming to this subject for the first time. There are numerous exercises provided of varying degrees of challenge.
|
|