Darwinian medicine looks at the ecological and evolutionary roots of disease. A disease is an interaction between a genome and its biotic or abiotic environment and therefore a disease is essentially an ecological process. Good understanding of ecology and a Darwinian way of thinking can give us novel and useful perspectives on health and disease. If we understand the disease process better, we can certainly prevent, control as well as treat diseases in a better way. Although the thought that the origins of obesity and type 2 diabetes (T2D) might lie in our hunter gatherer adaptations is not new, research over the last decade makes us rethink many of the classical concepts. Brain and behavior is increasingly being recognized as central to all the endocrine, metabolic and immunological changes that earmark type 2 diabetes and other metabolic syndrome disorders. A major change in paradigm appears to be on the horizon and the proposed book intends to speed up the paradigm shift by raising important questions, pointing out flaws and inadequacies in the prevalent paradigm and stimulating radical rethinking which would redirect and refine the line of research as well as bring some fundamental changes in drug discovery and clinical practice.

This is the first of two volumes on Gentianaceae. Comprising twelve chapters, it centres upon the characterization and ecology of Gentianaceae worldwide, with emphasis on the application of molecular and cytological approaches in relation to taxonomy. The first three chapters consider the classification of the family and review the advances in research since the earlier revision published in 2002, which resulted in the reclassification of some plants and the naming of new genera. The next chapter provides the most comprehensive report to date of the systematics of South American Neotropical woody Gentians. Other reviews include details of the Gentianaceae in Eastern Europe. The key biochemical steps that result in the diversity of Gentian flower colors, the cytology of European species and an historical account of the importance of Gentians in herbal medicines are also covered. Furthermore, an analysis of gene expression in overwintering buds is presented, discussing several aspects of plant taxonomy, phenotypic characteristics, phylogeography and pedigree. Two contributions highlight the importance of Gentians in India, and the last chapter presents evidence for the importance of Glomeromycota in developing arbuscular mycorrhizal associations with the roots of Gentians. This volume provides the basis for the biotechnological approaches that are considered in the companion book The Gentianaceae - Volume 2: Biotechnology and Applications.

The origin of energy-conserving organelles, the mitochondria of all aerobic eukaryotes and the plastids of plants and algae, is commonly thought to be the result of endosymbiosis, where a primitive eukaryote engulfed a respiring -proteobacterium or a phototrophic cyanobacterium, respectively. While present-day heterotrophic protists can serve as a model for the host in plastid endosymbiosis, the situation is more difficult with regard to (the preceding) mitochondrial origin: Two chapters describe these processes and theories and inherent controversies. However, the emphasis is placed on the evolution of phototrophic eukaryotes: Here, intermediate stages can be studied and the enormous diversity of algal species can be explained by multiple secondary and tertiary (eukaryote-eukaryote) endosymbioses superimposed to the single primary endosymbiotic event. Steps crucial for the establishment of a stable, mutualistic relationship between host and endosymbiont, as metabolic symbiosis, recruitment of suitable metabolite transporters, massive gene transfer to the nucleus, development of specific translocases for the re-import of endosymbiont proteins, etc. are discussed in individual chapters. Experts, dealing with biochemical, genetic and bioinformatic approaches provide insight into the state of the art of one of the central themes of biology. The book is written for graduate students, postdocs and scientists working in evolutionary biology, phycology, and phylogenetics.

Together with early theoretical work in population genetics, the debate on sources of genetic makeup initiated by proponents of the neutral theory made a solid contribution to the spectacular growth in statistical methodologies for molecular evolution. Evolutionary Genomics: Statistical and Computational Methods is intended to bring together the more recent developments in the statistical methodology and the challenges that followed as a result of rapidly improving sequencing technologies. Presented by top scientists from a variety of disciplines, the collection includes a wide spectrum of articles encompassing theoretical works and hands-on tutorials, as well as many reviews with key biological insight. Volume 2 begins with phylogenomics and continues with in-depth coverage of natural selection, recombination, and genomic innovation. The remaining chapters treat topics of more recent interest, including population genomics, -omics studies, and computational issues related to the handling of large-scale genomic data. Written in the highly successful Methods in Molecular Biology (TM) series format, this work provides the kind of advice on methodology and implementation that is crucial for getting ahead in genomic data analyses. Comprehensive and cutting-edge, Evolutionary Genomics: Statistical and Computational Methods is a treasure chest of state-of the-art methods to study genomic and omics data, certain to inspire both young and experienced readers to join the interdisciplinary field of evolutionary genomics.

Theoretical tools and insights from discrete mathematics, theoretical computer science, and topology now play essential roles in our understanding of vital biomolecular processes. The related methods are now employed in various fields of mathematical biology as instruments to "zoom in" on processes at a molecular level. This book contains expository chapters on how contemporary models from discrete mathematics - in domains such as algebra, combinatorics, and graph and knot theories - can provide perspective on biomolecular problems ranging from data analysis, molecular and gene arrangements and structures, and knotted DNA embeddings via spatial graph models to the dynamics and kinetics of molecular interactions. The contributing authors are among the leading scientists in this field and the book is a reference for researchers in mathematics and theoretical computer science who are engaged with modeling molecular and biological phenomena using discrete methods. It may also serve as a guide and supplement for graduate courses in mathematical biology or bioinformatics, introducing nontraditional aspects of mathematical biology.

Together with early theoretical work in population genetics, the debate on sources of genetic makeup initiated by proponents of the neutral theory made a solid contribution to the spectacular growth in statistical methodologies for molecular evolution. Evolutionary Genomics: Statistical and Computational Methods is intended to bring together the more recent developments in the statistical methodology and the challenges that followed as a result of rapidly improving sequencing technologies. Presented by top scientists from a variety of disciplines, the collection includes a wide spectrum of articles encompassing theoretical works and hands-on tutorials, as well as many reviews with key biological insight. Volume 1 includes a helpful introductory section of bioinformatician primers followed by detailed chapters detailing genomic data assembly, alignment, and homology inference as well as insights into genome evolution from statistical analyses. Written in the highly successful Methods in Molecular Biology (TM) series format, this work provides the kind of advice on methodology and implementation that is crucial for getting ahead in genomic data analyses. Comprehensive and cutting-edge, Evolutionary Genomics: Statistical and Computational Methods is a treasure chest of state-of the-art methods to study genomic and omics data, certain to inspire both young and experienced readers to join the interdisciplinary field of evolutionary genomics.

This volume investigates the effects of human activities on coral reefs, which provide important life-supporting systems to surrounding natural and human communities. It examines the self-reinforcing ecological, economic and technological mechanisms that degrade coral reef ecosystems around the world. Topics include reefs and limestones in Earth history; the interactions between corals and their symbiotic algae; diseases of coral reef organisms; the complex triangle between reef fishes, seaweeds and corals; coral disturbance and recovery in a changing world. In addition, the authors take key recent advances in DNA studies into account which provides new insights into the population biology, patterns of species distributions, recent evolution and vulnerabilities to environmental stresses. These DNA analyses also provide new understandings of the limitations of coral responses and scales of management necessary to sustain coral reefs in their present states. Coral reefs have been essential sources of food, income and resources to humans for millennia. This book details the delicate balance that exists within these ecosystems at all scales, from geologic time to cellular interactions and explores how recent global and local changes influence this relationship. It will serve as an indispensable resource for all those interested in learning how human activities have affected this vital ecosystem around the world.

More than two thirds of all living organisms described to date belong to the phylum Arthropoda. But their diversity, as measured in terms of species number, is also accompanied by an amazing disparity in terms of body form, developmental processes, and adaptations to every inhabitable place on Earth, from the deepest marine abysses to the earth surface and the air. The Arthropoda also include one of the most fashionable and extensively studied of all model organisms, the fruit-fly, whose name is not only linked forever to Mendelian and population genetics, but has more recently come back to centre stage as one of the most important and more extensively investigated models in developmental genetics. This approach has completely changed our appreciation of some of the most characteristic traits of arthropods as are the origin and evolution of segments, their regional and individual specialization, and the origin and evolution of the appendages. At approximately the same time as developmental genetics was eventually turning into the major agent in the birth of evolutionary developmental biology (evo-devo), molecular phylogenetics was challenging the traditional views on arthropod phylogeny, including the relationships among the four major groups: insects, crustaceans, myriapods, and chelicerates. In the meantime, palaeontology was revealing an amazing number of extinct forms that on the one side have contributed to a radical revisitation of arthropod phylogeny, but on the other have provided evidence of a previously unexpected disparity of arthropod and arthropod-like forms that often challenge a clear-cut delimitation of the phylum.

The vertebrate integument arose about 450 million years ago as an 'armour' of dermal bony plates in small, jawless fish-like creatures, informally known as the ostracoderms. This book reviews the major changes that have occurred in the vertebrate integument from its beginnings to the present day. Critical questions concerning the origin, structure and functional biology of the bony integument are discussed and intrinsically linked to major steps in vertebrate evolution and phylogeny-the origin of jaws and the origin of teeth. The discussions include the origins of mineralization of major vertebrate skeletal components such as the dermatocranium, branchial arches and vertebral column. The advances that led to the origin of modern fishes and their phylogenetic development are reviewed and include the evolution of fins and replacement of the bony plates with several types of dermal scales. The evolution of reptiles saw a major transformation of the integument, with the epidermis becoming the protective outermost layer, from which the scales arose, while the dermis lay below it. The biological significance of the newly-evolved -keratin in reptilian scales, among the toughest natural materials known, is discussed in the context of its major contribution to the great success of reptiles and to the evolution of feathers and avian flight. The dermis in many vertebrates is strengthened by layers of oppositely oriented cross-fibres, now firmly entrenched as a design principle of biomechanics. Throughout the book conventional ideas are discussed and a number of new hypotheses are presented in light of the latest developments. The long evolutionary history of vertebrates indicates that the significance of the Darwinian concept of "survival of the fittest" may be overstated, including in our own mammalian origins and that chance often plays a major role in evolutionary patterns. Extensive illustrations are included to support the verbal descriptions. Professor Theagarten Lingham-Soliar is in the Department of Life Sciences at the University of KwaZulu-Natal.

The book is composed of eight chapters, each of which are organised as walks around the Tewkesbury (UK) countryside, which move from the specific to increasingly broader ideas. So, the MS starts with an individual's relationship to their environment (Avon and Severn Valleys Loop) that leads to a description of conservation issues at local, national and international levels, and ultimately to a discussion of the importance of Citizen Science (Coombe Hill - Apperley -Deerhurst). The following chapter (Mythe Bridge - Forthampton - Tewkesbury) looks at science as it is actually practiced and its role in modern society by an analysis of the theory of Continental Drift and a biography of Alfred Wegener. This is a story that really deserves a much wider audience, as the idea was, in my opinion, as revolutionary as general relativity or quantum mechanics, and Wegener himself was such a heroic character. The following chapter (Tewkesbury Ham) also uses biography - this time of Alfred Russel Wallace - to investigate his ideas about how animal and plant distributions are inextricably linked to geological change. Wallace was every bit as heroic as Wegener, lived an even more adventurous life, and also deserves to be more widely known and appreciated. 2013 is the centenary of his death and he will be much in the news this year, so it would be timely to publish an account of his life and work suitable for the general public. The chapters on Wegener and Wallace set the scene for a detailed discussion of biogeography. This has been an active area of research for the past 30 years and I think it's about time that somebody wrote about what has been an intellectually exciting and profoundly significant development in our view of ourselves and the world we live in.

The extended continental South American turtle record (Norian to Lujanian) allows us to follow the evolution of this reptile clade from its origins. Several significant stem turtle taxa such as: Palaeochersis talampayensis and Condorchelys antiqua provide information on the first steps of turtle evolution. Others such as: Chubutemys copelloi or Patagoniaemys gasparinae provide clues to the origin of the bizarre horned tortoises of the clade Meiolaniidae. The panpleurodiran species such as Notoemys laticentralis or Notoemys zapatocaensis shed light on the origin of modern pleurodiran turtles. This book explores aquatic and terrestrial cryptodiran turtles, South Gondwana pleurodiran turtles, North Gondwana pleurodiran turtles; Meiolaniforms and early differentiation of Mesozoic turtles.

This book provides a series of comprehensive views on various important aspects of vertebrate photoreceptors. The vertebrate retina is a tissue that provides unique experimental advantages to neuroscientists. Photoreceptor neurons are abundant in this tissue and they are readily identifiable and easily isolated. These features make them an outstanding model for studying neuronal mechanisms of signal transduction, adaptation, synaptic transmission, development, differentiation, diseases and regeneration. Thanks to recent advances in genetic analysis, it also is possible to link biochemical and physiological investigations to understand the molecular mechanisms of vertebrate photoreceptors within a functioning retina in a living animal. Photoreceptors are the most deeply studied sensory receptor cells, but readers will find that many important questions remain. We still do not know how photoreceptors, visual pigments and their signaling pathways evolved, how they were generated and how they are maintained. This book will make clear what is known and what is not known. The chapters are selected from fields of studies that have contributed to a broad understanding of the birth, development, structure, function and death of photoreceptor neurons. The underlying common word in all of the chapters that is used to describe these mechanisms is "molecule". Only with this word can we understand how these highly specific neurons function and survive. It is challenging for even the foremost researchers to cover all aspects of the subject. Understanding photoreceptors from several different points of view that share a molecular perspective will provide readers with a useful interdisciplinary perspective.

Bryophytes, which are important constituents of ecosystems globally and often dominate carbon and water dynamics at high latitudes and elevations, were also among the pioneers of terrestrial photosynthesis. Consequently, in addition to their present day ecological value, modern representatives of these groups contain the legacy of adaptations that led to the greening of Earth. This volume brings together experts on bryophyte photosynthesis whose research spans the genome and cell through whole plant and ecosystem function and combines that with historical perspectives on the role of algal, bryophyte and vascular plant ancestors on terrestrialization of the Earth. The eighteen well-illustrated chapters reveal unique physiological approaches to achieving carbon balance and dealing with environmental limitations and stresses that present an alternative, yet successful strategy for land plants.

This book is divided in two parts, the first of which shows how, beyond paleontology and systematics, macroevolutionary theories apply key insights from ecology and biogeography, developmental biology, biophysics, molecular phylogenetics and even the sociocultural sciences to explain evolution in deep time. In the second part, the phenomenon of macroevolution is examined with the help of real life-history case studies on the evolution of eukaryotic sex, the formation of anatomical form and body-plans, extinction and speciation events of marine invertebrates, hominin evolution and species conservation ethics. The book brings together leading experts, who explain pivotal concepts such as Punctuated Equilibria, Stasis, Developmental Constraints, Adaptive Radiations, Habitat Tracking, Turnovers, (Mass) Extinctions, Species Sorting, Major Transitions, Trends and Hierarchies – key premises that allow macroevolutionary epistemic frameworks to transcend microevolutionary theories that focus on genetic variation, selection, migration and fitness. Along the way, the contributing authors review ongoing debates and current scientific challenges; detail new and fascinating scientific tools and techniques that allow us to cross the classic borders between disciplines; demonstrate how their theories make it possible to extend the Modern Synthesis; present guidelines on how the macroevolutionary field could be further developed; and provide a rich view of just how it was that life evolved across time and space. In short, this book is a must-read for active scholars and because the technical aspects are fully explained, it is also accessible for non-specialists. Understanding evolution requires a solid grasp of above-population phenomena. Species are real biological individuals and abiotic factors impact the future course of evolution. Beyond observation, when the explanation of macroevolution is the goal, we need both evidence and theory that enable us to explain and interpret how life evolves at the grand scale.

This book reports significant progress of scientific research on horseshoe crabs, including aspects of evolution, genetics, ecology, population dynamics, general biology and physiology, within the recent 10 years. It also highlights the emerging issues related to world-wide conservation threats, status and needs. The contributions in this book represent part of an ongoing global effort to increase data and concept sharing to support basic research and advance conservation for horseshoe crabs.

This book offers a new explanation for the development of flight in mammals and offers detailed morphological descriptions of mammals with flapping flight. The skeletomuscular apparatus of the shoulder girdle and forelimbs of tree shrews, flying lemurs and bats is described in detail. Special attention is paid to the recognition of peculiar features of the skeleton and joints. For the basic locomotor patterns of flying lemurs and bats, the kinematic models of the shoulder girdle elements are developed. The most important locomotor postures of these animals are analyzed by means of statics. The key structural characters of the shoulder girdle and forelimbs of flying lemurs and bats, the formation of which provided transition of mammals from terrestrial locomotion to gliding and then, to flapping flight, are recognized. The concept is proposed that preadaptations preceding the acquisition of flapping flight could have come from widely sprawled forelimb posture while gliding from tree to tree and running up the thick trunks. It is shown that flying lemur is an adequate morphofunctional model for an ancestral stage of bats. The evolutionary ecomorphological scenario describing probable transformational stages of typical parasagittal limbs of chiropteran ancestors into wings is developed.

Howler monkeys (genus Alouatta) comprise 12 species of leaf-eating New World monkeys that range from southern Mexico through northern Argentina. This genus is the most widespread of any New World primate and can be found to inhabit a range of forest types from undisturbed rainforest to severely anthropogenically-impacted forest fragments. Although there have been many studies on individual species of howler monkeys, this book is the first comprehensive volume that places information on howler behavior and biology within a theoretical framework of ecological and social adaptability. This is the first of two companion volumes devoted to the genus Alouatta. This volume: * Provides new and original empirical and theoretical research on howler monkeys * Presents evolutionary and adaptive explanations for the ecological success of howler monkeys * Examines howler behavior and ecology within a comparative framework These goals are achieved in a collection of chapters written by a distinguished group of scientists on the evolutionary history, paleontology, taxonomy, genetics, morphology, physiology, and anatomy of howlers. The volume also contains chapters on howlers as vectors of infectious diseases, ethnoprimatology, and conservation.

Directed Evolution Library Creation: Methods and Protocols, Second Edition presents user-friendly protocols for both proven strategies and cutting-edge approaches for the creation of mutant gene libraries for directed evolution. As well as experimental methods, information on current computational approaches is provided in a user-friendly format that will allow researchers to make informed choices without needing to comprehend the full technical details of each algorithm. Directed evolution has become a fundamental approach for engineering proteins to enhance activity and explore structure-function relationships, and has supported the rapid development of the field of synthetic biology over the last decade. Divided into three convenient sections, topics include point mutagenesis strategies, recombinatorial methods wherein genetic diversity is sourced from multiple parental genes that are combined via either homology-dependent or -independent techniques and a variety of computational methods to guide the design and analysis of mutant libraries. Written in the successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols and notes on troubleshooting and avoiding known pitfalls. Authoritative and easily accessible, Directed Evolution Library Creation: Methods and Protocols, Second Edition will serve as a reliable manual for both novice and experienced protein engineers and synthetic biologists and will enable further technical innovation and the exploitation of directed evolution for a deeper understanding of protein design and function.

Phylogenetic comparative approaches are powerful analytical tools for making evolutionary inferences from interspecific data and phylogenies. The phylogenetic toolkit available to evolutionary biologists is currently growing at an incredible speed, but most methodological papers are published in the specialized statistical literature and many are incomprehensible for the user community. This textbook provides an overview of several newly developed phylogenetic comparative methods that allow to investigate a broad array of questions on how phenotypic characters evolve along the branches of phylogeny and how such mechanisms shape complex animal communities and interspecific interactions. The individual chapters were written by the leading experts in the field and using a language that is accessible for practicing evolutionary biologists. The authors carefully explain the philosophy behind different methodologies and provide pointers - mostly using a dynamically developing online interface - on how these methods can be implemented in practice. These "conceptual" and "practical" materials are essential for expanding the qualification of both students and scientists, but also offer a valuable resource for educators. Another value of the book are the accompanying online resources (available at: http://www.mpcm-evolution.com), where the authors post and permanently update practical materials to help embed methods into practice.

This book collects three outstanding examples of the work of Mexican biologist Alfonso Luis Herrera (1868-1943), a pioneer in experimental origins of life research. Two of the collected works appear here in English for the first time. Herrera's works represent the attempt to deal experimentally with the issue of an autotrophic origin of life, a possibility that was widely accepted prior to Alexander I. Oparin's ideas regarding the possibility of organic synthesis and the origin of life in an early Earth environment. An active promoter of Darwinian ideas in Latin America, Herrera was also among the first 20th century researchers to attempt to "create life in a test tube." This collection shows the remarkable prescience of researchers in Mexico with regards to laboratory approaches to the problem of the origin of life. It also includes a modern commentary by researchers actively engaged in research in prebiotic evolution and the origins of life, and deeply concerned with the historical development of ideas in these fields. The list includes H. James Cleaves, Antonio Lazcano, Alicia Negron-Gonzalez and Juli Pereto, who discuss in detail the relevance of Herrera's ideas to modern theory and their historical context. The book will expose modern readers and researchers to currents of thinking that have been lost, largely to time and language inaccessibility, of a seminal early theoretical biologist.

This volume describes features of autonomy and integrates them into the recent discussion of factors in evolution. In recent years ideas about major transitions in evolution are undergoing a revolutionary change. They include questions about the origin of evolutionary innovation, their genetic and epigenetic background, the role of the phenotype and of changes in ontogenetic pathways. In the present book, it is argued that it is likewise necessary to question the properties of these innovations and what was qualitatively generated during the macroevolutionary transitions. The author states that a recurring central aspect of macroevolutionary innovations is an increase in individual organismal autonomy whereby it is emancipated from the environment with changes in its capacity for flexibility, self-regulation and self-control of behavior. The first chapters define the concept of autonomy and examine its history and its epistemological context. Later chapters demonstrate how changes in autonomy took place during the major evolutionary transitions and investigate the generation of organs and physiological systems. They synthesize material from various disciplines including zoology, comparative physiology, morphology, molecular biology, neurobiology and ethology. It is argued that the concept is also relevant for understanding the relation of the biological evolution of man to his cultural abilities. Finally the relation of autonomy to adaptation, niche construction, phenotypic plasticity and other factors and patterns in evolution is discussed. The text has a clear perspective from the context of systems biology, arguing that the generation of biological autonomy must be interpreted within an integrative systems approach.

As a species, we are currently experiencing dramatic shifts in our lifestyle, family structure, health, and global contact. Evolutionary Anthropology provides a powerful theoretical framework to study such changes, revealing how current environments and legacies of past selection shape human diversity. This book is the first major review of the emerging field of Applied Evolutionary Anthropology bringing together the work of an international group of evolutionary scientists, addressing many of the major public health and social issues of this century. Through a series of case studies that span both rural and urban situations in Africa, Asia, Europe and South America, each chapter addresses topics such as natural resource management, health service delivery, population growth and the emergence of new family structures, dietary, and co-operative behaviours. The research presented identifies the great, largely untapped, potential that Applied Evolutionary Anthropology holds to guide the design, implementation and evaluation of effective social and public health policy. This book will be of interest to policy-makers and applied researchers, along with academics and students across the biological and social sciences.

In Why We Run, biologist, award-winning nature writer, and ultramarathoner Bernd Heinrich explores a new perspective on human evolution by examining the phenomenon of ultraendurance and makes surprising discoveries about the physical, spiritual -- and primal -- drive to win. At once lyrical and scientific, Why We Run shows Heinrich's signature blend of biology, anthropology, psychology, and philosophy, infused with his passion to discover how and why we can achieve superhuman abilities.

The present book gives an overview on the similarities and differences of the various translation systems. Moreover, it highlights the mechanisms and control of translation in mitochondria and other organelles such as chloroplasts, plastids and apicoplasts in different organisms. Lastly, it offers an outlook on future developments and applications that might be made possible by a better understanding of translation in mitochondria and other organelles.  

This is the first textbook of Virtual Anthropology, the new science that combines elements from fields as diverse as anthropology, medicine, statistics, computing, scientific visualization, and industrial design. The book is intended for students in any of these or nearby fields within biology, medicine, or engineering and for teachers, journalists, and all others who will enjoy the many examples from our real biological world. After a general introduction to the field and an overview, the book is organized around six themes conveyed in more than 300 pages of text accompanied by hundreds of carefully annotated images: medical imaging and 3D digitising techniques, electronic preparation of individual specimens, analysis of complex forms in space one or many at a time, reconstruction of forms that are partly missing or damaged, production of real objects from virtual models, and, finally, thoughts about data accessibility and sharing and the implications of all this for the future of anthropology. The authors' emphasis is not on technical details but rather on step-by-step explanations of the wealth of examples included here, from brain evolution to surgical planning, always in light of the relevance of these approaches to science and to society. All readers are encouraged to try out the techniques on their own using the tools and data included in the Online Extra Materials resource.