Written for non-experts, this volume introduces the mechanisms that underlie reticulate evolution. Chapters are either accompanied with glossaries that explain new terminology or timelines that position pioneering scholars and their major discoveries in their historical contexts. The contributing authors outline the history and original context of discovery of symbiosis, symbiogenesis, lateral gene transfer, hybridization or divergence with gene flow and infectious heredity. By applying key insights from the areas of molecular (phylo)genetics, microbiology, virology, ecology, systematics, immunology, epidemiology and computational science, they demonstrate how reticulate evolution impacts successful survival, fitness and speciation. Reticulate evolution brings forth a challenge to the standard Neo-Darwinian framework, which defines life as the outcome of bifurcation and ramification patterns brought forth by the vertical mechanism of natural selection. Reticulate evolution puts forward a pattern in the tree of life that is characterized by horizontal mergings and lineage crossings induced by symbiosis, symbiogenesis, lateral gene transfer, hybridization or divergence with gene flow and infective heredity, making the “tree of life� look more like a “web of life.� On an epistemological level, the various means by which hereditary material can be transferred horizontally challenges our classic notions of units and levels of evolution, fitness, modes of transmission, linearity, communities and biological individuality. The case studies presented examine topics including the origin of the eukaryotic cell and its organelles through symbiogenesis; the origin of algae through primary and secondary symbiosis and dinoflagellates through tertiary symbiosis; the superorganism and holobiont as units of evolution; how endosymbiosis induces speciation in multicellular life forms; transferrable and non-transferrable plasmids and how they symbiotically interact with their host; the means by which pro- and eukaryotic organisms transfer genes laterally (bacterial transformation, transduction and conjugation as well as transposons and other mobile genetic elements); hybridization and divergence with gene flow in sexually-reproducing individuals; current (human) microbiome and viriome studies that impact our knowledge concerning the evolution of organismal health and acquired immunity; and how symbiosis and symbiogenesis can be modelled in computational evolution.

1. 1 Nautilus and Allonautilus: Two Decades of Progress W. Bruce Saunders Department of Geology Bryn Mawr College Bryn Mawr PA 19010 wsaunder@brynmawr. edu Neil H. Landman Division of Paleontology American Museum of Natural History New York, New York 10024 landman@amnh. org When Nautilus: Biology and Paleobiology of a Living Fossil was published in 1987, it marked a milestone in cross-disciplinary collaboration. More than half of the contributing authors (36/65) were paleontologists, many of whom were collaborating with neontological counterparts. Their interest in studying this reclusive, poorly known animal was being driven by a search for clues to the mode of life and natural history of the once dominant shelled cephalopods, through study of the sole surviving genus. At the same time, Nautilus offered an opportunity for neontologists to look at a fundamentally different, phylogenetically basal member of the extant Cephalopoda. It was a w- win situation, combining paleontological deep-time perspectives, old fashioned expeditionary zeal, traditional biological approaches and new techniques. The results were cross-fertilized investigations in such disparate fields as ecology, functional morphology, taphonomy, genetics, phylogeny, locomotive dynamics, etc. As one reviewer of the xxxvi Introduction xxxvii book noted, Nautilus had gone from being one of the least known to one of the best understood of living cephalopods.

The book integrates our understanding of the factors and processes underlying the evolution of multicellularity by providing several complementary perspectives (both theoretical and experimental) and using examples from various lineages in which multicellularity evolved. Recent years marked an increased interest in understanding how and why these transitions occurred, and data from various fields are providing new insights into the forces driving the several independent transitions to multicellular life as well as into the genetic and molecular basis for the evolution of this phenotype. The ultimate goal of this book is to facilitate the identification of general and unifying principles and mechanisms.

This book proposes an applied epistemological framework for investigating science, social cognition and religious thinking based on inferential patterns that recur in the different domains. It presents human rationality as a tool that allows us to make sense of our (physical or social) surroundings. It shows that the resulting cognitive activity produces a broad spectrum of outputs, such as scientific models and experimentation, gossip and social networks, but also ancient and contemporary deities. The book consists of three parts, the first of which addresses scientific modeling and experimentation, and their application to the analysis of scientific rationality. Thus, this part continues the tradition of eco-cognitive epistemology and abduction studies. The second part deals with the relationship between social cognition and cognitive niche construction, i.e. the evolutionarily relevant externalization of knowledge onto the environment, while the third part focuses on what is commonly defined as “irrational�, thus being in a way dialectically opposed to the first part. Here, the author demonstrates that the “irrational� can be analyzed by applying the same epistemological approach used to study scientific rationality and social cognition; also in this case, we see the emergence of patterns of rationality that regulate the relationships between agents and their environment. All in all, the book offers a coherent and unitary account of human rationality, providing a basis for new conceptual connections and theoretical speculations.

This book details a model of consciousness supported by scientific experimental data from the human brain. It presents how the Corollary Discharge of Attention Movement (CODAM) neural network model allows for a scientific understanding of consciousness as well as provides a solution to the Mind-Body problem. The book provides readers with a general approach to consciousness that is powerful enough to lead to the inner self and its ramifications for the vast range of human experiences. It also offers an approach to the evolution of human consciousness and features chapters on mental disease (especially schizophrenia) and on meditative states (including drug-induced states of mind). Solving the Mind-Body Problem bridges the gap that exists between philosophers of mind and the neuroscience community, allowing the enormous weight of theorizing on the nature of mind to be brought to earth and put under the probing gaze of the scientific facts of life and mind.

Assembles a collection of experts to provide a current account of different approaches (e.g., traditional, comparative and experimental) being applied to study mobility. Moreover, the book aims to stimulate new theoretical perspectives that adopt a holistic view of the interaction among intrinsic (i.e. skeletal) and extrinsic (i.e. environmental) factors that influence differential expression of mobility. Since the environment undoubtedly impacts mobility of a wide variety of animals, insights into human mobility, as a concept, can be improved by extending approaches to investigating comparable environmental influences on mobility in animals in general. The book teases apart environmental effects that transcend typical categories (e.g., coastal versus inland, mountainous versus level, arboreal versus terrestrial). Such an approach, when coupled with a new emphasis on mobility as types of activities rather than activity levels, offers a fresh, insightful perspective on mobility and how it might affect the musculoskeletal system.

Three major aspects that distinguish this book are that (1) it contains the most detailed analysis of the sexual reproduction (oogenesis, fertilization and embryonic incubation) in a particular phylum of the aquatic invertebrates (Bryozoa) ever made; this analysis is based on an exhaustive review of the literature on that topic published over the last 260 years, as well as extensive original histological, anatomical and morphological data obtained during studies of both extant and extinct species; (2) this broad analysis has made it possible to reconstruct the major patterns, stages and trends in the evolution of sexual reproduction in various bryozoan clades, showing numerous examples of parallelisms during transitions from broadcasting to embryonic incubation, from planktotrophic to non-feeding larvae and from lecithotrophy to placentation; corresponding shifts in oogenesis, fertilization and embryonic development are discussed in detail; and (3) the key evolutionary novelties acquired by Bryozoa are compared with similar innovations that have evolved in other groups of marine invertebrates, showing the general trends in the evolution of their sexual reproduction. Ecological background of these innovations is considered too. Altogether these aspects make the monograph an “Encyclopedia of bryozoan sexual reproduction,� offering an integral picture of the evolution of this complex phenomenon.

This volume explains the key ideas, questions and methods involved in studying the hidden world of vibrational communication in animals. The authors dispel the notion that this form of communication is difficult to study and show how vibrational signaling is a key to social interactions in species that live in contact with a substrate, whether it be a grassy lawn, a rippling stream or a tropical forest canopy. This ancient and widespread form of social exchange is also remarkably understudied. A frontier in animal behavior, it offers unparalleled opportunities for discovery and for addressing general questions in communication and social evolution. In addition to reviews of advances made in the study of several animal taxa, this volume also explores topics such as vibrational communication networks, the interaction of acoustic and vibrational communication, the history of the field, the evolution of signal production and reception and establishing a common vocabulary.

This book develops and tests an ecological and evolutionary theory of the causes of human values—the core beliefs that guide people’s cognition and behavior—and their variation across time and space around the world. We call this theory the parasite-stress theory of values or the parasite-stress theory of sociality. The evidence we present in our book indicates that both a wide span of human affairs and major aspects of human cultural diversity can be understood in light of variable parasite (infectious disease) stress and the range of value systems evoked by variable parasite stress. The same evidence supports the hypothesis that people have psychological adaptations that function to adopt values dependent upon local infectious-disease adversity. The authors have identified key variables, variation in infectious disease adversity and in the core values it evokes, for understanding these topics and in novel and encompassing ways. Although the human species is the focus in the book, evidence presented in the book shows that the parasite-stress theory of sociality informs other topics in ecology and evolutionary biology such as variable family organization and speciation processes and biological diversity in general in non-human animals.

As a species, we are currently experiencing dramatic shifts in our lifestyle, family structure, health, and global contact. Evolutionary Anthropology provides a powerful theoretical framework to study such changes, revealing how current environments and legacies of past selection shape human diversity. This book is the first major review of the emerging field of Applied Evolutionary Anthropology bringing together the work of an international group of evolutionary scientists, addressing many of the major public health and social issues of this century. Through a series of case studies that span both rural and urban situations in Africa, Asia, Europe and South America, each chapter addresses topics such as natural resource management, health service delivery, population growth and the emergence of new family structures, dietary, and co-operative behaviours. The research presented identifies the great, largely untapped, potential that Applied Evolutionary Anthropology holds to guide the design, implementation and evaluation of effective social and public health policy. This book will be of interest to policy-makers and applied researchers, along with academics and students across the biological and social sciences.

This volume describes features of autonomy and integrates them into the recent discussion of factors in evolution. In recent years ideas about major transitions in evolution are undergoing a revolutionary change. They include questions about the origin of evolutionary innovation, their genetic and epigenetic background, the role of the phenotype and of changes in ontogenetic pathways. In the present book, it is argued that it is likewise necessary to question the properties of these innovations and what was qualitatively generated during the macroevolutionary transitions. The author states that a recurring central aspect of macroevolutionary innovations is an increase in individual organismal autonomy whereby it is emancipated from the environment with changes in its capacity for flexibility, self-regulation and self-control of behavior. The first chapters define the concept of autonomy and examine its history and its epistemological context. Later chapters demonstrate how changes in autonomy took place during the major evolutionary transitions and investigate the generation of organs and physiological systems. They synthesize material from various disciplines including zoology, comparative physiology, morphology, molecular biology, neurobiology and ethology. It is argued that the concept is also relevant for understanding the relation of the biological evolution of man to his cultural abilities. Finally the relation of autonomy to adaptation, niche construction, phenotypic plasticity and other factors and patterns in evolution is discussed. The text has a clear perspective from the context of systems biology, arguing that the generation of biological autonomy must be interpreted within an integrative systems approach.

The present book gives an overview on the similarities and differences of the various translation systems. Moreover, it highlights the mechanisms and control of translation in mitochondria and other organelles such as chloroplasts, plastids and apicoplasts in different organisms. Lastly, it offers an outlook on future developments and applications that might be made possible by a better understanding of translation in mitochondria and other organelles.  

The origin of energy-conserving organelles, the mitochondria of all aerobic eukaryotes and the plastids of plants and algae, is commonly thought to be the result of endosymbiosis, where a primitive eukaryote engulfed a respiring -proteobacterium or a phototrophic cyanobacterium, respectively. While present-day heterotrophic protists can serve as a model for the host in plastid endosymbiosis, the situation is more difficult with regard to (the preceding) mitochondrial origin: Two chapters describe these processes and theories and inherent controversies. However, the emphasis is placed on the evolution of phototrophic eukaryotes: Here, intermediate stages can be studied and the enormous diversity of algal species can be explained by multiple secondary and tertiary (eukaryote-eukaryote) endosymbioses superimposed to the single primary endosymbiotic event. Steps crucial for the establishment of a stable, mutualistic relationship between host and endosymbiont, as metabolic symbiosis, recruitment of suitable metabolite transporters, massive gene transfer to the nucleus, development of specific translocases for the re-import of endosymbiont proteins, etc. are discussed in individual chapters. Experts, dealing with biochemical, genetic and bioinformatic approaches provide insight into the state of the art of one of the central themes of biology. The book is written for graduate students, postdocs and scientists working in evolutionary biology, phycology, and phylogenetics.

The extended continental South American turtle record (Norian to Lujanian) allows us to follow the evolution of this reptile clade from its origins. Several significant stem turtle taxa such as: Palaeochersis talampayensis and Condorchelys antiqua provide information on the first steps of turtle evolution. Others such as: Chubutemys copelloi or Patagoniaemys gasparinae provide clues to the origin of the bizarre horned tortoises of the clade Meiolaniidae. The panpleurodiran species such as Notoemys laticentralis or Notoemys zapatocaensis shed light on the origin of modern pleurodiran turtles. This book explores aquatic and terrestrial cryptodiran turtles, South Gondwana pleurodiran turtles, North Gondwana pleurodiran turtles; Meiolaniforms and early differentiation of Mesozoic turtles.

Researchers in the field of ecological genomics aim to determine how a genome or a population of genomes interacts with its environment across ecological and evolutionary timescales. Ecological genomics is trans-disciplinary by nature. Ecologists have turned to genomics to be able to elucidate the mechanistic bases of the biodiversity their research tries to understand. Genomicists have turned to ecology in order to better explain the functional cellular and molecular variation they observed in their model organisms. We provide an advanced-level book that covers this recent research and proposes future development for this field. A synthesis of the field of ecological genomics emerges from this volume. Ecological Genomics covers a wide array of organisms (microbes, plants and animals) in order to be able to identify central concepts that motivate and derive from recent investigations in different branches of the tree of life. Ecological Genomics covers 3 fields of research that have most benefited from the recent technological and conceptual developments in the field of ecological genomics: the study of life-history evolution and its impact of genome architectures; the study of the genomic bases of phenotypic plasticity and the study of the genomic bases of adaptation and speciation.

More than two thirds of all living organisms described to date belong to the phylum Arthropoda. But their diversity, as measured in terms of species number, is also accompanied by an amazing disparity in terms of body form, developmental processes, and adaptations to every inhabitable place on Earth, from the deepest marine abysses to the earth surface and the air. The Arthropoda also include one of the most fashionable and extensively studied of all model organisms, the fruit-fly, whose name is not only linked forever to Mendelian and population genetics, but has more recently come back to centre stage as one of the most important and more extensively investigated models in developmental genetics. This approach has completely changed our appreciation of some of the most characteristic traits of arthropods as are the origin and evolution of segments, their regional and individual specialization, and the origin and evolution of the appendages. At approximately the same time as developmental genetics was eventually turning into the major agent in the birth of evolutionary developmental biology (evo-devo), molecular phylogenetics was challenging the traditional views on arthropod phylogeny, including the relationships among the four major groups: insects, crustaceans, myriapods, and chelicerates. In the meantime, palaeontology was revealing an amazing number of extinct forms that on the one side have contributed to a radical revisitation of arthropod phylogeny, but on the other have provided evidence of a previously unexpected disparity of arthropod and arthropod-like forms that often challenge a clear-cut delimitation of the phylum.

This book provides a series of comprehensive views on various important aspects of vertebrate photoreceptors. The vertebrate retina is a tissue that provides unique experimental advantages to neuroscientists. Photoreceptor neurons are abundant in this tissue and they are readily identifiable and easily isolated. These features make them an outstanding model for studying neuronal mechanisms of signal transduction, adaptation, synaptic transmission, development, differentiation, diseases and regeneration. Thanks to recent advances in genetic analysis, it also is possible to link biochemical and physiological investigations to understand the molecular mechanisms of vertebrate photoreceptors within a functioning retina in a living animal. Photoreceptors are the most deeply studied sensory receptor cells, but readers will find that many important questions remain. We still do not know how photoreceptors, visual pigments and their signaling pathways evolved, how they were generated and how they are maintained. This book will make clear what is known and what is not known. The chapters are selected from fields of studies that have contributed to a broad understanding of the birth, development, structure, function and death of photoreceptor neurons. The underlying common word in all of the chapters that is used to describe these mechanisms is "molecule". Only with this word can we understand how these highly specific neurons function and survive. It is challenging for even the foremost researchers to cover all aspects of the subject. Understanding photoreceptors from several different points of view that share a molecular perspective will provide readers with a useful interdisciplinary perspective.

This book represents a cutting-edge contribution giving an all-around perspective of eco-immunology today. Beside questions of the utmost importance for the whole community of immunologists, e.g, the intrinsic limits of immunological experiments performed at the bench on a limited number of selected models, the book covers several other facets of the eco-immunological approach, including host-parasite interactions, human aging and population immunology. Throughout the book the importance of population dynamics and evolutionary diversification of immune systems is frequently recalled, and makes the reader aware of the basic similarities and differences existing between humans and the models adopted for studying human immune system. The evidenced differences have been recently challenging the reliability of several established animal models and in the book it is discussed for the first time in analytical terms whether mice are reliable models of human inflammatory disorders.

Howler monkeys (genus Alouatta) comprise 12 species of leaf-eating New World monkeys that range from southern Mexico through northern Argentina. This genus is the most widespread of any New World primate and can be found to inhabit a range of forest types from undisturbed rainforest to severely anthropogenically-impacted forest fragments. Although there have been many studies on individual species of howler monkeys, this book is the first comprehensive volume that places information on howler behavior and biology within a theoretical framework of ecological and social adaptability. This is the first of two companion volumes devoted to the genus Alouatta. This volume: * Provides new and original empirical and theoretical research on howler monkeys * Presents evolutionary and adaptive explanations for the ecological success of howler monkeys * Examines howler behavior and ecology within a comparative framework These goals are achieved in a collection of chapters written by a distinguished group of scientists on the evolutionary history, paleontology, taxonomy, genetics, morphology, physiology, and anatomy of howlers. The volume also contains chapters on howlers as vectors of infectious diseases, ethnoprimatology, and conservation.

Directed Evolution Library Creation: Methods and Protocols, Second Edition presents user-friendly protocols for both proven strategies and cutting-edge approaches for the creation of mutant gene libraries for directed evolution. As well as experimental methods, information on current computational approaches is provided in a user-friendly format that will allow researchers to make informed choices without needing to comprehend the full technical details of each algorithm. Directed evolution has become a fundamental approach for engineering proteins to enhance activity and explore structure-function relationships, and has supported the rapid development of the field of synthetic biology over the last decade. Divided into three convenient sections, topics include point mutagenesis strategies, recombinatorial methods wherein genetic diversity is sourced from multiple parental genes that are combined via either homology-dependent or -independent techniques and a variety of computational methods to guide the design and analysis of mutant libraries. Written in the successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols and notes on troubleshooting and avoiding known pitfalls. Authoritative and easily accessible, Directed Evolution Library Creation: Methods and Protocols, Second Edition will serve as a reliable manual for both novice and experienced protein engineers and synthetic biologists and will enable further technical innovation and the exploitation of directed evolution for a deeper understanding of protein design and function.

This is the first textbook of Virtual Anthropology, the new science that combines elements from fields as diverse as anthropology, medicine, statistics, computing, scientific visualization, and industrial design. The book is intended for students in any of these or nearby fields within biology, medicine, or engineering and for teachers, journalists, and all others who will enjoy the many examples from our real biological world. After a general introduction to the field and an overview, the book is organized around six themes conveyed in more than 300 pages of text accompanied by hundreds of carefully annotated images: medical imaging and 3D digitising techniques, electronic preparation of individual specimens, analysis of complex forms in space one or many at a time, reconstruction of forms that are partly missing or damaged, production of real objects from virtual models, and, finally, thoughts about data accessibility and sharing and the implications of all this for the future of anthropology. The authors' emphasis is not on technical details but rather on step-by-step explanations of the wealth of examples included here, from brain evolution to surgical planning, always in light of the relevance of these approaches to science and to society. All readers are encouraged to try out the techniques on their own using the tools and data included in the Online Extra Materials resource.

Carina Klein examines the quality of the existing modern ammonoid zonation based on three methods, being Unitary Associations (UA), Constrained Optimization (CONOP) as well as Ranking and Scaling (RASC). The author sets out which of these three methods is best suitable to refine these zones. The results obtained are compared to each other with regard to ammonoid succession and resolution as well as with empirical data from selected reference sections. The analysis reveals that the UA and RASC methods are the most suitable since the results best mirror the empirical data from the single outcrops.

Non-mammalian synapsids were the dominant terrestrial vertebrates from the Late Carboniferous to the Middle Triassic and play a key role in understanding the origin and evolution of mammals. Despite these facts and the outstanding fossil record of the group, early synapsids remain obscure. This book showcases the full breadth of contemporary research on non-mammalian synapsids, ranging from taxonomy and phylogenetics to functional morphology, biogeography, paleoecology, and patterns of diversity. It also underscores the importance and potential of studying non-mammalian synapsid paleobiology in its own right, not just in the context of mammalian evolution.

"A rollicking tour through humanity's evolutionary past, and von Hippel is the consummate tour guide. With equal parts wisdom, humor, authority, and charm, he shows how our past explains the present and why our well-being rests on an understanding of how our minds evolved."-Adam Alter, New York Times bestselling author of Drunk Tank Pink and Irresistible Human psychology is rife with contradictions: We work hard to achieve our goals, but happiness at our success is fleeting. We hope our friends will do well but can't help but feel jealous if they do too well. We're aghast at the thought of people we know being murdered, but are unconcerned when our armed forces kill enemies we've never met. We complain about difficult bosses but are often just as bad when we're in charge. These inconsistencies may seem irrational, but each evolved to serve a vital function in our lives. Indeed, the most fundamental aspects of our psychology were permanently shaped by the "social leap" our ancestors made from the rainforest to the savannah. In their struggle to survive on the open grasslands, our ancestors prioritized teamwork and sociality over physical prowess, creating an entirely new kind of intelligence that forever altered our place on this planet. A blend of anthropology, biology, history, and psychology with evolutionary science, The Social Leap traces our evolutionary history to show how events in our distant past continue to shape our lives today. From why we exaggerate to why we believe our own lies, the implications are far-reaching and extraordinary.

The million copy international bestseller, critically acclaimed and translated into over 25 languages. As influential today as when it was first published, The Selfish Gene has become a classic exposition of evolutionary thought. Professor Dawkins articulates a gene's eye view of evolution - a view giving centre stage to these persistent units of information, and in which organisms can be seen as vehicles for their replication. This imaginative, powerful, and stylistically brilliant work not only brought the insights of Neo-Darwinism to a wide audience, but galvanized the biology community, generating much debate and stimulating whole new areas of research. Forty years later, its insights remain as relevant today as on the day it was published. This 40th anniversary edition includes a new epilogue from the author discussing the continuing relevance of these ideas in evolutionary biology today, as well as the original prefaces and foreword, and extracts from early reviews. Oxford Landmark Science books are 'must-read' classics of modern science writing which have crystallized big ideas, and shaped the way we think.