This Microbiology Monographs volume covers the current and most recent advances in genomics and genetics, biochemistry, physiology, and molecular biology of C. reinhardtii. Expert international scientists contribute with reviews on the genome, post-genomic techniques, the genetic toolbox development as well as new insights in regulation of photosynthesis and acclimation strategies towards environmental stresses and other structural and genetic aspects, including applicable aspects in biotechnology and biomedicine. Powerful new strategies in functional genomic and genetics combined with biochemical and physiological analyses revealed new insights into Chlamydomonas biology.

"Plant Virus-Host Interaction" contains cutting-edge research in plant molecular virology, including pathogenic viroids and transport by insect vectors, interference with transmission to control viruses, and synergism, with pivotal coverage of RNA silencing and the counter-defensive strategies used by viruses to overcome the silencing response in plants.

With a clear focus on plant virus evolution, including quantitative and population genetics, "Plant Virus-Host Interaction" provides insights on the major factors favoring disease emergence, such as genetic change in pathogen and host populations and changes in host ecology and environment. The book also examines socioeconomic implications of widespread plant viral agents. Contributions from leading experts around the globe provide varied perspectives, while comprehensive coverage ensures a complete look at this exciting field.
Covers the emergence of new viral diseasesProvides molecular approaches for virus-host interactionHighlights RNA silencing and counter-defensive strategiesDiscusses socioeconomic implications of viral spread and mitigation techniques

The first review series in virology and published since 1953, "Advances in Virus Research" covers a diverse range of in-depth reviews, providing a valuable overview of the field.
Contributions from leading authoritiesComprehensive reviews for general and specialist useFirst and longest-running review series in virology

The existence of life at high temperatures is quiet fascinating. At elevated temperatures, only microorganisms are capable of growth and survival. A variety of microbes survive and grow at such high temperatures. Many thermophilic microbial genera have been isolated from man-made (washing machines, factory effluents, waste streams and acid mine effluents) and natural (volcanic areas, geothermal areas, terrestrial hot springs, submarine hydrothermal vents, geothermally heated oil reserves and oil wells, sun-heated litter and soils/sediments) thermal habitats throughout the world. Both culture-dependent and culture-independent approaches have been employed for understanding the diversity of microbes in hot environments. These organisms not only tolerate such high temperatures but also usually require these for their growth and survival. They are known as thermophiles/thermophilic microbes, which include a wide variety of prokaryotes (Bacteria and Archaea) as well as eukaryotes (Fungi, Algae, Protozoa). Interest in their diversity, ecology, and physiology has increased enormously during the past few decades as indicated by the deliberations in international conferences on extremophiles and thermophiles every alternate year. The Phylogenetic relationship of the known microorganisms indicates the presence of thermophilic microorganisms at the position close to the Last Universal Common Ancestor (LUCA). It is widely accepted that metal-reducing microorganisms have a large impact on the geochemistry of subsurface environments through the cycling of metals and organic matter, and thereby affect water quality and taste. Furthermore, metal-reducing micro-organisms have potential applications in bioremediation, mineral leaching and energy generation processes and are of evolutionary interest as metal reduction is considered to be a very ancient form of respiration. Protein characterization surprisingly indicated that possible additional functionality and alternate site promiscuity could contribute to the diverse biochemical abilities of the bacteria, especially with respect to microbe-metal interactions. Thermophilic bacteria are also able to reduce a wide spectrum of other metals including Mn (IV), Cr (VI), U (VI), Tc (VII), Co (III), Mo (VI), Au (I, III), and Hg (II) which can be used for immobilization of toxic metals/radionuclides, e.g. for the bioremediation of hot waste water of disposal sites of radioactive wastes having temperature range favorable for thermophiles for a long period of time. The main sources of CO in hot environments inhabited by anaerobic thermophiles are volcanic exhalations and thermal degradation of organic matter. A number of phylogenetically diverse anaerobic prokaryotes, both Bacteria and Archaea, are known to metabolize CO. CO transformation may be coupled to methanogenesis, acetogenesis, hydrogenogenesis, sulfate or ferric iron reduction. The key enzyme of anaerobic CO utilization, the Ni-containing CO dehydrogenase, is synthesized in hydrogenogens as an enzyme complex with the energy-converting hydrogenase. The genomic analysis shows this enzymatic complex to be encoded by a single gene cluster. Themophilic moulds and bacteria have been extensively studied in plant biomass bioconversion processes, as sources of industrial enzymes and as gene donors for the heterologous expression of thermostable enzymes. In the development of third generation biofuels such as bioethanol, thermophilic fungal and bacterial enzymes are of particular interest. The entire genomes of several thermophilic bacteria and archaea have already been sequenced. The analysis of the genomic data provided resources for novel and useful proteins and enzymes. The entire genomic data have also provided specific feature of microbes and important information on the evolution of thermophilic microorganisms. In some thermophilic archaea, multiple types of chaperonins have been identified. The chaperonins have been found to change according to the environmental conditions, suggesting that the mechanism for maintaining correct structure of thermostable proteins in the thermophilic archaea is regulated by changing chaperonine molecules. These organisms have evolved several structural and chemical adaptations, which allow them to survive and grow at elevated temperatures. Thermostable enzymes play an important role in the biosynthesis of fine chemicals. They are generally more robust against the conditions of industrial biocatalysis utilized by the industry, which can be solvent based or at elevated temperatures. Many non-natural industrially interesting substrates are often not soluble under aqueous conditions and at ambient temperatures. The thermophilic Archaea are a good source of these enzymes, which have been cloned and over-expressed in Escherichia coli. These include alcohol dehydrogenases for chiral alcohol production, aminoacylases for optically pure amino acids and amino acid analogues, transaminases for chiral amine production and gamma lactamases for chiral gamma lactam building blocks which are subsequently incorporated into carbocyclic nucleotides. Considerable interest has been generated in the mechanism that nature utilizes to increase the stability of enzymes found in thermophilic and hyperthermophilic species. A comparative approach has been used to carry out a detailed study of specific enzymes from a range of organisms in order to understand acquired stability at a structural level. A directed or site-specific mutagenesis approach has been used for stabilizing mesophilic proteins. The specific mutations have been introduced by looking at the most primitive forms of life, which are thought to have evolved in a thermophilic environment. The book is aimed at bringing together scattered up-to-date information on various aspects of thermophiles such as the diversity of thermophiles and viruses of thermophiles, their potential roles in pollution control and bioremediation, composting and microb

This contributed volume provides insights into multiple applications using microbes to promote productivity in agriculture, to produce biochemicals or to respond to challenges in biomedicine. It highlights the microbial production of nanocompounds with medical functionality alongside new anti-mycobacterial strategies, and introduces plant-growth-promoting Rhizobacteria as well as the correlation between biofilm formation and crop productivity. Further, the authors illustrate the green synthesis of biochemical compounds, such as hydroxamid acid or biosurfactants, using microbial and fungal enzymes. It inspires young researchers and experienced scientists in the field of microbiology to explore the combined use of green, white and red biotechnology for industrial purposes, which will be one of the central topics for future generations.

This book provides a selection of recently developed methods and protocols in bacterial glycomics to aid in bettering our understanding of the structures and functions of bacterial polysaccharides, their attachments to proteins and lipids, their role in biofilm formation, as well as their biosynthesis. With the emerging bacterial resistance to commonly used antibiotics world-wide, these techniques to study the outer polysaccharides of bacteria, with their functions in bacterial adhesion, colonization, growth, establishment of biofilms, and control virulence and pathogenicity, are increasingly important. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Bacterial Polysaccharides: Methods and Protocols aims to support researchers contributing to future approaches that will fill our knowledge gaps and define anti-bacterial targets.

This volume discusses various methods and protocols used for the experimentation of a wide range of bacterial species, such as Streptococcus pyogenes, Staphylococcus aureus, Streptococcus pneumonia, Listeria monocytogenes, and Mycobacterium marinum. Bacterial Pathogens: Methods and Protocols is divided into 6 parts: Part 1 describes different approaches to identifying and characterizing bacterial effector molecules; Part 2 deals with structural biology of bacterial pathogenesis and how to overcome folding and stability problems with recombinantly expressed proteins; Part 3 details methodology that identifies bacteria in complex communities and how genomes of bacterial pathogens have evolved; Part 4 reflects on the rapid development of advanced imaging techniques that address questions about molecular properties of individual live bacteria, ultrastructure of surfaces, and subcellular localization of bacterial proteins; Part 5 describes methods from in vitro and in vivo modeling of bacterial infections; and Part 6 explores how bacterial pathogens are the true experts of the immune system. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and comprehensive, Bacterial Pathogens: Methods and Protocols is a valuable resource for anyone who is interested in this fascinating and evolving field.

Bringing together key research on bisphenol A (BPA) removal to allow students, and designers and operators of treatment plants to gain knowledge and insight into operating practices, this book presents developments in the technology of wastewater treatment for the removal of micropollutants, using BPA as an example. The difficulties in removing BPA from wastewater in traditional wastewater treatment plants are addressed along with a detailed analysis on integrated technologies for BPA removal; wastewater microorganisms that biodegrade BPA, and physical and chemical methods to support the biodegradation of BPA and its removal from wastewater. Readers are able to gain a general understanding of up-to-date techniques for removing BPA from wastewater, and are able to use the book as a reference for specific questions that they have.

This book gives an overview of the physiology, health, safety and functional aspects of microorganisms present in food and fermented foods. A particular focus is on the health effects of probiotics and non-dairy functional foods. The book deals also with microbes that cause food spoilage and produce toxins, and the efficiency of edible biofilm in the protection of packaged foods. Several chapters are devoted to the occurrence of Listeria pathogens in various food sources. Further topics are fortified foods, the role of trace elements, and the preservation of food and extension of food shelf life by a variety of measures.

This volume brings together the most widely used and important protocols currently being employed in researching and understanding bacterial cell wall homeostasis. Chapters in Bacterial Cell Wall Homeostasis cover a variety of subjects, such as: modern microscopy techniques and other biophysical methods used to characterize the subcellular structure of the bacterial cell wall; high-throughput approaches that can be used to identify all the genes and proteins that participate in the correct functioning of an organism's cell wall; protocols for assaying individual gene products for specific cell wall functions or identify chemicals with inhibitory activity against the cell wall; and methods for analyzing the non-protein components of the cell wall and the increasing use of computational approaches for predicting and modeling cell wall related functions and processes. Written in the highly successful Methods in Molecular Biology series format, chapters include introduction to their respective topics, lists of the necessary material and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Thorough and cutting-edge, Bacterial Cell Wall Homeostasis: Methods and Protocols emphasizes the diversity of the research taking place in bacterial cell wall homeostasis, and explains how the integration of information from across multiple disciplines is going to be essential if a holistic understanding of this important process is to be obtained.

This book highlights the importance of various emerging technologies that are used to clean up the environment from pollution caused by human activities. It assesses several existing applied and environmental microbiological techniques and introduces new technologies through applied aspects. Select topics covered include municipal wastewater treatment, environmental microorganisms, metal pollutants in the environment, and biogeochemical cycling.

This book summarizes the current state of knowledge concerning bacteria that use halogenated organic compounds as respiratory electron acceptors. The discovery of organohalide-respiring bacteria has expanded the range of electron acceptors used for energy conservation, and serves as a prime example of how scientific discoveries are enabling innovative engineering solutions that have transformed remediation practice. Individual chapters provide in-depth background information on the discovery, isolation, phylogeny, biochemistry, genomic features, and ecology of individual organohalide-respiring genera, including Dehalococcoides, Dehalogenimonas, Dehalobacter, Desulfitobacterium and Sulfurospirillum, as well as organohalide-respiring members of the Deltaproteobacteria. The book introduces readers to the fascinating biology of organohalide-respiring bacteria, offering a valuable resource for students, engineers and practitioners alike.

This volume presents the issues and challenges of crop pathogens and plant protection. Composed of the latest knowledge in plant pathology, the book covers topics such as fungal diseases of the groundnut, plant growth promoting rhizobacteria, plant pathogenic fungi in the genomics era, the increased virulence of wheat rusts and oat fungal diseases.

Written by experienced and internationally recognized scientists in the field, "Future Challenges in Crop Protection Against Fungal Pathogens "is a concise yet comprehensive resource valuable for both novice as well as experienced plant scientists and researchers.

"The Role of Animals in Emerging Viral Diseases" presents what is currently known about the role of animals in the emergence or re-emergence of viruses including HIV-AIDS, SARS, Ebola, avian flu, swine flu, and rabies. It presents the structure, genome, and methods of transmission that influence emergence and considers non-viral factors that favor emergence, such as animal domestication, human demography, population growth, human behavior, and land-use changes.

When viruses jump species, the result can be catastrophic, causing disease and death in humans and animals. These zoonotic outbreaks reflect several factors, including increased mobility of human populations, changes in demography and environmental changes due to globalization. The threat of new, emerging viruses and the fact that there are no vaccines for the most common zoonotic viruses drive research in the biology and ecology of zoonotic transmission.

In this book, specialists in 11emerging zoonotic viruses present detailed information on each virus's structure, molecular biology, current geographic distribution, and method of transmission. The book discusses the impact of virus emergence by considering the ratio of mortality, morbidity, and asymptomatic infection and assesses methods for predicting, monitoring, mitigating, and controlling viral disease emergence.
Analyzes the structure, molecular biology, current geographic distribution and methods of transmission of 10 virusesProvides a clear perspective on how events in wildlife, livestock, and even companion animals have contributed to virus outbreaks and epidemicsExemplifies the "one world, one health, one medicine" approach to emerging disease by examining events in animal populations as precursors to what could affect humans"

This book reviews efforts to produce chemicals and fuels from forest and plant products, agricultural residues and more. Algae can potentially capture solar energy and atmospheric CO2; the book details needed research and legislative initiatives.

Published since 1959, "Advances in Applied Microbiology" continues to be one of the most widely read and authoritative review sources in microbiology.
The series contains comprehensive reviews of the most current research in applied microbiology. Recent areas covered include bacterial diversity in the human gut, protozoan grazing of freshwater biofilms, metals in yeast fermentation processes and the interpretation of host-pathogen dialogue through microarrays.
Eclectic volumes are supplemented by thematic volumes on various topics, including Archaea and sick building syndrome. Impact factor for 2009: 1.860.
* Contributions from leading authorities and industry experts
* Informs and updates on all the latest developments in the field
* Reference and guide for scientists and specialists involved in advancements in applied microbiology

This book discusses the use of microorganisms for improving nutrient quality and producing healthier foods. Conventional roles of microbes in food preservation and in producing more readily digestible nutrients via natural fermentation processes are also examined. Individual chapters explore topics such as bio-preservation, incorporation of lactic acid bacteria, traditional fermented Mongolian foods, fermented fish products of Sudan, probiotics in China, fermented soymilk, food colorants, and the effect of food on gut microbiota. Readers will gain insights into current trends and future prospects of functional foods and nutraceuticals. This volume will be of particular interest to scientists working in the fields of food sciences, microbiology, agriculture and public health.

This book summarizes the current state of knowledge regarding antibiotics and antibiotics resistance genes (ARGs) in the soil environment. It covers a wide range of topics to help readers understand antibiotics and ARGs in soils, the risks they pose for the environment, and options for effective control. In addition, it presents a range of essential tools and methodologies that can be used to address antibiotics and ARGs in a consistent, efficient, and cost-effective manner. Gathering contributions by international experts, the book addresses both theoretical aspects and practical applications.The topics discussed include antibiotics-producing microorganisms; the routes of entry and fate of antibiotics and resistance genes; biomonitoring approaches; dissemination of ARGs in soils; risk assessment; the impact of antibiotics and ARGs on the soil microbial community and other biota; bioremediation and biodegradation approaches; and soil management strategies for antibiotics and ARG-contaminated soils.As such, the book will be of interest to students, researchers and scholars in environmental science and engineering, toxicology, the medical and pharmaceutical sciences, environmental biotechnology, soil sciences, microbial ecology and plant biotechnology. Readers and Journals: 1. This new volume on antibiotics and antibiotics resistance genes (ARGs) in the soil environment will be of interest to students, researchers and scholars in environmental science and engineering, toxicology, the medical and pharmaceutical sciences, environmental biotechnology, soil sciences,microbial ecology and plant biotechnology. 2. The book will provide government authorities all over the world with effective strategies for the management of antibiotics and antibiotics resistance genes (ARG)- contaminated soil. 3. Gathering contributions by international experts,the book addresses both theoretical aspects and practical applications.

A renaissance of virus research is taking centre stage in biology. Empirical data from the last decade indicate the important roles of viruses, both in the evolution of all life and as symbionts of host organisms. There is increasing evidence that all cellular life is colonized by exogenous and/or endogenous viruses in a non-lytic but persistent lifestyle. Viruses and viral parts form the most numerous genetic matter on this planet.

"The Biology and Identification of the Coccidia (Apicomplexa) of Rabbits of the World" is a taxonomic summation of a damaging intestinal parasite found in rabbits and transmissible to other species, including humans. This book conceptually and historically summarizes the world's literature on the parasite and also provides a quick guide to isolation procedures, identification, strategies for management, and available chemotherapy. It is a vital source of knowledge about coccidia s real and potential transmission to humans, which can lead to dangerous health problems, like severe dehydration, vomiting, lethargy and even death.

Coccidiosis is an intestinal disease that affects several different animal species, including canines and humans, and is one of the most prevalent protozoal infections in North America. The causative agent is a protozoan that has the ability to multiply rapidly and cause major damage in the intestinal wall, rupturing the cells of the intestinal lining. The final stage, the oocyst, is extremely resistant to environmental stress and is difficult to completely remove from the environment. Oocysts are frequent contaminants of feed and water and when the sporulated oocysts are ingested by other animals, they start the life cycle over in the new host. With the demand for rabbits in scientific research and for rabbit meat for human consumption increasingly globally each year, rabbits are of epidemiologic significance for laboratory workers, university researchers, veterinarians, pet owners, and breeders.
Evaluates the scientific and scholarly merit of each of the publications written about coccidian from every rabbit species, providing a complete historical renditionA treatise for the identification of coccidia and their treatment as neededWritten in a style that can be understood by most educated lay persons and laboratory workersWritten by the first ranked author team among the world-class parasitologists who study coccidiaCombined in one single source, this book follows the gold standards in coccidian biology and identificationBrings all that information together in one volume and solves the problems faced by researchers, veterinarians, students and others in trying to find and navigate through this scattered literature"

Molecular biology has revolutionized the study of microorganisms in the environment and has improved our understanding of the composition, phylogeny, and physiology of microbial communities. The current molecular toolbox encompasses a range of DNA-based technologies and new methods for the study of RNA and proteins extracted from environmental samples. Currently, there is a major emphasis on the application of "omics" approaches to determine the identities and functions of microbes inhabiting different environments. This book highlights the current state-of-the-art of environmental molecular microbiology. International experts have contributed chapters that describe the various technologies and their applications in environmental microbiology. The first half of the book focuses on the microbial diversity and phylogeny of microorganisms in the environment and describes the molecular toolbox currently available for the study of the composition and diversity of microbial communities and their functions. Topics include the use of the 16S rRNA gene as a phylogenetic marker, metagenomics, metaproteomics, microarrays, and molecular fingerprinting. The second half focuses on the application of these approaches in various environments including soil, marine water, plants, humans, and wastewater treatment. The last chapter of the book discusses the genetics and environmental implications of microbial biofilms. This is an essential book for advanced students, research scientists, environmental agencies, and industries involved in any aspect of environmental microbiology.

This book tackles a number of different perspectives concerning the parasitic helminth Ascaris, both in animals and in humans and the disease known as ascariasis. It seeks to identify interesting, exciting and novel aspects, which will interest readers from a broad range of disciplines. Over a quarter of the world's population are infected with the human roundworm, and the equivalent in pigs is equally ubiquitous. Both contribute to insidious and chronic nutritional morbidity, and this has been quantified, in humans, as disability adjusted life years approximating 10.5 million. Ascaris larvae develop in host parenteral tissues, and the resultant pathology has been condemnation. Ascariasis, despite its staggering global prevalence and the sheer numbers of people it infects, remains a classic neglected disease. However, renewed interest in the consequences of early infection with worms from the perspective of immune modulation, co-infections and the development of allergy further enhances the relevance of these parasites.
Brings together a wide range of topics and approaches and recent, comprehensive and progressive researchconcerning the neglected parasite Ascaris

Provides a blueprint of how a single parasite entity can stimulate interest in basic biology, clinical science, veterinary science, public health and epidemiology

Presents awealth of new insights given that a book on this parasite has not been published for over 20 years

16 chapters from a range of top authors from around the world "

Carbon (C), Nitrogen (N) and Phosphorus (P) are three of the most important elements used to build living beings, and their uptake from the environment is consequently essential for all organisms. Photosynthesis is the process in which plants absorb atmospheric C as they grow and convert it to biomass. However, plants acquire N and P only when these are available in the soil solution, which makes these elements the most limiting nutrients in plant growth and productivity in most ecosystems. When plant residues and roots decompose, the C, N and P they contain is transformed primarily into soil organic matter (SOM) or C and N can release to the atmosphere. Recent interest on the global C, N and P cycles has focused attention on the different proportion of terrestrial C, N and P stored in different ecosystem pools. Cuatro Cienegas represents an exceptional place, since the plants are not the base of the food web, they are the microbial community, that recycle the elements essential for life. In this book we describe how this is an analog of early Earth.

Plants are endowed with innate immune system, which acts as a surveillance system against possible attack by pathogens. Plant innate immune systems have high potential to fight against viral, bacterial, oomycete and fungal pathogens and protect the crop plants against wide range of diseases. However, the innate immune system is a sleeping system in unstressed healthy plants. Fast and strong activation of the plant immune responses aids the host plants to win the war against the pathogens. Plant hormone signaling systems including salicylate (SA), jasmonate (JA), ethylene (ET), abscisic acid (ABA), auxins, cytokinins, gibberellins and brassinosteroids signaling systems play a key role in activation of the sleeping immune systems. Suppression or induction of specific hormone signaling systems may result in disease development or disease resistance. Specific signaling pathway has to be activated to confer resistance against specific pathogen in a particular host. Two forms of induced resistance, systemic acquired resistance (SAR) and induced systemic resistance (ISR), have been recognized based on the induction of specific hormone signaling systems. Specific hormone signaling system determines the outcome of plant-pathogen interactions, culminating in disease development or disease resistance. Susceptibility or resistance against a particular pathogen is determined by the action of the signaling network. The disease outcome is often determined by complex network of interactions among multiple hormone signaling pathways. Manipulation of the complex hormone signaling systems and fine tuning the hormone signaling events would help in management of various crop diseases. The purpose of the book is to critically examine the potential methods to manipulate the multiple plant hormone signaling systems to aid the host plants to win the battle against pathogens.

Legionnaires disease, a potentially fatal type of pneumonia primarily affecting elderly and immuno-compromised persons, is caused by the ubiquitous environmental bacterium "Legionella pneumophila." This book offers authoritative reviews of different facets of its virulence, focusing on comparative phagocyte infection, virulence gene regulation, biochemical functions of effector proteins and cellular pathogen-host interactions, as well as host responses and immunity to "L. pneumophila." Taken together, the contributions in this compilation provide a state-of-the-art overview of current insights into the molecular pathogenesis of the opportunistic and potentially fatal pathogen "L. pneumophila.""