This set of lecture notes gives a first coherent account on a novel aspect of the living world that can be called biological information. The book presents both a pedagogical and state-of-the art roadmap of this rapidly evolving field and covers the whole range from information which is encoded in the molecular genetic code to the description of large-scale evolution of complex species networks. The book will prove useful for all those who work at the interface of biology, physics and information science.

Almost all evolutionary biologists, indeed all biologists, use particular features to study life. These characteristics or features used by evolutionary biologists are used in a particular way to unravel a tangled evolutionary history, document the rate of evolutionary change, or as evidence of biodiversity. "Characters" are the "data" of evolutionary biology and they can be employed differently in research providing both opportunities and limitations. The Character Concept in Evolutionary Biology is about characters, their use, how different sorts of characters are limited, and what are appropriate methods for character analysis. Leading evolutionary biologists from around the world are contributors to this authoritative review of the "character concept." Because characters and the conception of characters are central to all studies of evolution, and because evolution is the central organizing principle of biology, this book will appeal to a wide cross-section of biologists.
Key Features
* Focuses upon "characters" -- fundamental data for evolutionary biology
* Covers the myriad ways in which characters are defined, described, and distinguished
* Includes historical, morphological, molecular, behavioral, and philosophical perspectives

Biological systems are very special substrates for engineering-uniquely the products of evolution, they are easily redesigned by similar approaches. A simple algorithm of iterative cycles of diversification and selection, evolution works at all scales, from single molecules to whole ecosystems. In the little more than a decade since the first reported applications of evolutionary design to enzyme engineering, directed evolution has matured to the point where it now represents the centerpiece of industrial biocatalyst development and is being practiced by thousands of academic and industrial scientists in com- nies and universities around the world. The appeal of directed evolution is easy to understand: it is conceptually straightforward, it can be practiced without any special instrumentation and, most important, it frequently yields useful solutions, many of which are totally unanticipated. Directed evolution has r- dered protein engineering readily accessible to a broad audience of scientists and engineers who wish to tailor a myriad of protein properties, including th- mal and solvent stability, enzyme selectivity, specific activity, protease s- ceptibility, allosteric control of protein function, ligand binding, transcriptional activation, and solubility. Furthermore, the range of applications has expanded to the engineering of more complex functions such as those performed by m- tiple proteins acting in concert (in biosynthetic pathways) or as part of mac- molecular complexes and biological networks.

Written for non-experts, this volume introduces the mechanisms that underlie reticulate evolution. Chapters are either accompanied with glossaries that explain new terminology or timelines that position pioneering scholars and their major discoveries in their historical contexts. The contributing authors outline the history and original context of discovery of symbiosis, symbiogenesis, lateral gene transfer, hybridization or divergence with gene flow and infectious heredity. By applying key insights from the areas of molecular (phylo)genetics, microbiology, virology, ecology, systematics, immunology, epidemiology and computational science, they demonstrate how reticulate evolution impacts successful survival, fitness and speciation. Reticulate evolution brings forth a challenge to the standard Neo-Darwinian framework, which defines life as the outcome of bifurcation and ramification patterns brought forth by the vertical mechanism of natural selection. Reticulate evolution puts forward a pattern in the tree of life that is characterized by horizontal mergings and lineage crossings induced by symbiosis, symbiogenesis, lateral gene transfer, hybridization or divergence with gene flow and infective heredity, making the "tree of life" look more like a "web of life." On an epistemological level, the various means by which hereditary material can be transferred horizontally challenges our classic notions of units and levels of evolution, fitness, modes of transmission, linearity, communities and biological individuality. The case studies presented examine topics including the origin of the eukaryotic cell and its organelles through symbiogenesis; the origin of algae through primary and secondary symbiosis and dinoflagellates through tertiary symbiosis; the superorganism and holobiont as units of evolution; how endosymbiosis induces speciation in multicellular life forms; transferrable and non-transferrable plasmids and how they symbiotically interact with their host; the means by which pro- and eukaryotic organisms transfer genes laterally (bacterial transformation, transduction and conjugation as well as transposons and other mobile genetic elements); hybridization and divergence with gene flow in sexually-reproducing individuals; current (human) microbiome and viriome studies that impact our knowledge concerning the evolution of organismal health and acquired immunity; and how symbiosis and symbiogenesis can be modelled in computational evolution.

This book is divided in two parts, the first of which shows how, beyond paleontology and systematics, macroevolutionary theories apply key insights from ecology and biogeography, developmental biology, biophysics, molecular phylogenetics and even the sociocultural sciences to explain evolution in deep time. In the second part, the phenomenon of macroevolution is examined with the help of real life-history case studies on the evolution of eukaryotic sex, the formation of anatomical form and body-plans, extinction and speciation events of marine invertebrates, hominin evolution and species conservation ethics. The book brings together leading experts, who explain pivotal concepts such as Punctuated Equilibria, Stasis, Developmental Constraints, Adaptive Radiations, Habitat Tracking, Turnovers, (Mass) Extinctions, Species Sorting, Major Transitions, Trends and Hierarchies - key premises that allow macroevolutionary epistemic frameworks to transcend microevolutionary theories that focus on genetic variation, selection, migration and fitness. Along the way, the contributing authors review ongoing debates and current scientific challenges; detail new and fascinating scientific tools and techniques that allow us to cross the classic borders between disciplines; demonstrate how their theories make it possible to extend the Modern Synthesis; present guidelines on how the macroevolutionary field could be further developed; and provide a rich view of just how it was that life evolved across time and space. In short, this book is a must-read for active scholars and because the technical aspects are fully explained, it is also accessible for non-specialists. Understanding evolution requires a solid grasp of above-population phenomena. Species are real biological individuals and abiotic factors impact the future course of evolution. Beyond observation, when the explanation of macroevolution is the goal, we need both evidence and theory that enable us to explain and interpret how life evolves at the grand scale.

Sex Differences serves as an advanced text for courses in evolutionary and human biology, psychology, and sexuality and gender studies. It also serves as a reference source for academic professionals in these disciplines. The book covers the evolution of sex and sex differences, and sex differences and sexual strategies in non-human and human animals. The final chapter addresses issues of sex and gender in interpersonal relationships, organizations and politics. Diagrams, graphs, charts, and tables illustrate key concepts; cartoons and photos provide visual breaks and an element of humor.
Key Features
* Examines sexual differences from a multi-level comparative approach
* Contains a thorough coverage of literature through 1998 and into 1999
* Illustrates pages with a generous use of cartoons, photos, figures, and diagrams
* Invites bonus learning with special interest boxes interspersed throughout text
* Presents a critical analysis
* Includes a combination of feminist and evolutionary thinking

This book focuses on how climatic change during the last fifteen million years - especially the last three million - has affected human evolution and other evolutionary events. Leading evolutionists and physical geologists from all over the worldauthorities on such subjects as paleoceanography, palynology, mammalian paleontology, and paleoanthropology - address the relationship between climatic and biotic evolution, presenting and integrating the most up-to-date research in their fields. Among the subjects discussed are: global and regional climatic changes; tectonism and its effects on climate; the evolution of biomes and mammals; the ways climate might have influenced the origins of hominid species; and the evolution of hominid morphologies and behaviors. The book draws on the comparatively rich data base of the Late Neogene and includes many new data sets and hypotheses on paleoclimatic changes and on floral and mammalian evolution.

I first became involved in research into primate behavior and ecology in 1968, over 40 years ago, driven by a quest for a better understanding of the natural context of primate evolution. At that time, it was virtually unknown that primates can exploit exudates as a major food source. I was certainly unaware of this myself. By good fortune, I was awarded a postdoctoral grant to work on lemurs with Jean-Jacques Petter in the general ecology division of the Museum National d'Histoire Naturelle in Brunoy, France. This provided the launching-pad for my first field study of lesser mouse lemurs in Madagascar, during which I gained my initial inklings of exudate feeding. It was also in Brunoy that I met up with Pierre Charles- Dominique, who introduced me to pioneering observations of exudate feeding he had made during his field study of five lorisiform species in Gabon. This opened my eyes to a key feeding adaptation that has now been reported for at least 69 primate species in 12 families (Smith, Chap. 3) - almost 20% of extant primate species. So exudativory is now firmly established as a dietary category for p- mates, alongside the long-recognized classes of faunivory (including insectivory), frugivory, and folivory. Soon after I encountered Charles-Dominique, he published the first synthetic account of his Gabon field study in a French language journal (Charles-Dominique 1971).

Given the rapidly developing area of evolutionary medicine and public health, The Arc of Life examines ways in which research conducted by biological anthropologists can enrich our understanding of variation in human health outcomes. The book aims not only to showcase the perspective that biological anthropologists bring to the burgeoning field of evolutionary medicine, but to underscore the context of human life history -- especially the concept of evolutionary trade-offs and the ensuing biological processes that can affect health status over the life course. This dual emphasis on life history theory and life cycle biology will make for a valuable and unique, yet complementary, addition to books already available on the subject of evolution and health. The book consolidates diverse lines of research within the field of biological anthropology, stimulates new directions for future research, and facilitates communication between subdisciplines of human biology operating at the forefront of evolutionary medicine.

The vertebrate integument arose about 450 million years ago as an armour of dermal bony plates in small, jawless fish-like creatures, informally known as the ostracoderms. This book reviews the major changes that have occurred in the vertebrate integument from its beginnings to the present day. Critical questions concerning the origin, structure and functional biology of the bony integument are discussed and intrinsically linked to major steps in vertebrate evolution and phylogeny the origin of jaws and the origin of teeth. The discussions include the origins of mineralization of major vertebrate skeletal components such as the dermatocranium, branchial arches and vertebral column. The advances that led to the origin of modern fishes and their phylogenetic development are reviewed and include the evolution of fins and replacement of the bony plates with several types of dermal scales. The evolution of reptiles saw a major transformation of the integument, with the epidermis becoming the protective outermost layer, from which the scales arose, while the dermis lay below it.The biological significance of the newly-evolved -keratin in reptilian scales, among the toughest natural materials known, is discussed in the context of its major contribution to the great success of reptiles and to the evolution of feathers and avian flight. The dermis in many vertebrates is strengthened by layers of oppositely oriented cross-fibres, now firmly entrenched as a design principle of biomechanics. Throughout the book conventional ideas are discussed and a number of new hypotheses are presented in light of the latest developments. The long evolutionary history of vertebrates indicates that the significance of the Darwinian concept of survival of the fittest may be overstated, including in our own mammalian origins and that chance often plays a major role in evolutionary patterns. Extensive illustrations are included to support the verbal descriptions.

Professor Theagarten Lingham-Soliar is in the Department of Life Sciences at the University of KwaZulu-Natal."

Rough-and-tumble play provided one of the paradigmatic examples of the appli- tion of ethological methods, back in the 1970's. Since then, a modest number of - searchers have developed our knowledge of this kind of activity, using a variety of methods, and addressing some quite fundamental questions about age changes, sex diff- ences, nature and function of behaviour. In this chapter I will review work on this topic, mentioning particularly the interest in comparing results from different informants and different methods of investigation. Briefly, rough-and-tumble play (or R&T for short) refers to a cluster of behaviours whose core is rough but playful wrestling and tumbling on the ground; and whose general characteristic is that the behaviours seem to be agonistic but in a non-serious, playful c- text. The varieties of R&T, and the detailed differences between rough-and-tumble play and real fighting, will be discussed later. 2. A BRIEF HISTORY OF RESEARCH ON R&T In his pioneering work on human play, Groos (1901) described many kinds of rough-and-tumble play. However, R&T was virtually an ignored topic from then until the late 1960's. There was, of course, a flowering of observational research on children in the 1920s and 1930s, especially in North America; but this research had a strong practical o- entation, and lacked the cross-species perspective and evolutionary orientation present in Groos' work.

Most organisms and populations have to cope with hostile environments, threatening their existence. Their ability to respond phenotypically and genetically to these challenges and to evolve adaptive mechanisms is, therefore, crucial. The contributions to this book aim at understanding, from a evolutionary perspective, the impact of stress on biological systems. Scientists, applying different approaches spanning from the molecular and the protein level to individuals, populations and ecosystems, explore how organisms adapt to extreme environments, how stress changes genetic structure and affects life histories, how organisms cope with thermal stress through acclimation, and how environmental and genetic stress induce fluctuating asymmetry, shape selection pressure and cause extinction of populations. Finally, it discusses the role of stress in evolutionary change, from stress induced mutations and selection to speciation and evolution at the geological time scale. The book contains reviews and novel scientific results on the subject. It will be of interest to both researchers and graduate students and may serve as a text for graduate courses.

The growing success of molecular methods has challenged traditional views of animal evolution and a large number of alternative hypotheses are hotly debated today. For the deep metazoan phylogeny project, data sets of hitherto unmatched quality and quantity were compiled and analysed with innovative bioinformatics tools. The book begins at the base of the tree of life to discuss the origin of animals and early branches of the phylogenetic tree. The following section presents special data sets gained from mitochondrial genomes and from morphology, with a focus on nervous systems. The final section is dedicated to theoretical aspects of data analysis and new bioinformatics tools. The book closes with a unique general discussion of all hypotheses contained in previous chapters.This work provides the most comprehensiveoverview available of the state of the art in this exciting field of evolutionary research.

In a brilliant follow-up to his blockbuster "The God Delusion," Dawkins lays out the evidence for evolution.

Researchers in the field of ecological genomics aim to determine how a genome or a population of genomes interacts with its environment across ecological and evolutionary timescales. Ecological genomics is trans-disciplinary by nature. Ecologists have turned to genomics to be able to elucidate the mechanistic bases of the biodiversity their research tries to understand. Genomicists have turned to ecology in order to better explain the functional cellular and molecular variation they observed in their model organisms.

We provide an advanced-level book that covers this recent research and proposes future development for this field. A synthesis of the field of ecological genomics emerges from this volume."Ecological Genomics"covers a wide array of organisms (microbes, plants and animals) in order to be able to identify central concepts that motivate and derive from recent investigations in different branches of the tree of life.

"Ecological Genomics"covers 3 fields of research that have most benefited from the recent technological and conceptual developments in the field of ecological genomics: the study of life-history evolution and its impact of genome architectures; the study of the genomic bases of phenotypic plasticity and the study of the genomic bases of adaptation and speciation.

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Spontaneous self-cloning or clonality is a widespread phenomenon in the plant kingdom, and has a wide array of ecological and evolutionary implications. This volume is the outcome of an international workshop on clonal plant biology aimed at illustrating current progress and recent developments in the scientific study of clonality in plants. The first section of this book includes a collection of original research articles which demonstrate the wide variety of approaches and scientific challenges linked to clonality in plants. The topics covered in this section include ecological and evolutionary implications of sexual versus asexual propagation, including life-history evolution and sex-ratio dynamics, the importance of internal resource transport and remobilization of storage products for the invasiveness and competitiveness of clonal plants, a survey of clonal growth forms in grassland communities, and studies on the interactions between clonal plants and animals and fungi. The approaches used range from experimental studies on a broad variety of systems to mathematical modeling of clonal growth and its consequences. The second part features discussion and review papers on a diverse array of subjects, ranging from developmental considerations of clonality, principles of selection and evolution in clonal plants, a survey of clonality in algae, to potential implications of clonality for plant mating, and beyond. This part of the volume aims at presenting novel ideas and hypotheses, and at summarizing existing knowledge in previously under-researched areas, thereby providing directions for future research initiatives.

This book captures ongoing cutting-edge research in the field of clonal plant ecology and evolution. It is directed to anyone from the undergraduate to specialist level who is interested in the biology of the intriguing phenomenon of asexual propagation in plants.

I Twenty-five years ago, at the Conference on the Comparative Reception of Darwinism held at the University of Texas in 1972, only two countries of the Iberian world-Spain and Mexico-were represented.' At the time, it was apparent that the topic had attracted interest only as regarded the "mainstream" science countries of Western Europe, plus the United States. The Eurocentric bias of professional history of science was a fact. The sea change that subsequently occurred in the historiography of science makes 1972 appear something like the antediluvian era. Still, we would like to think that that meeting was prescient in looking beyond the mainstream science countries-as then perceived-in order to test the variation that ideas undergo as they pass from center to periphery. One thing that the comparative study of the reception of ideas makes abundantly clear, however, is the weakness of the center/periphery dichotomy from the perspective of the diffusion of scientific ideas. Catholics in mainstream countries, for example, did not handle evolution much better than did their corre1igionaries on the fringes. Conversely, Darwinians in Latin America were frequently better placed to advance Darwin's ideas in a social and political sense than were their fellow evolutionists on the Continent. The Texas meeting was also a marker in the comparative reception of scientific ideas, Darwinism aside. Although, by 1972, scientific institutions had been studied comparatively, there was no antecedent for the comparative history of scientific ideas.

We know the universe has a history, but does it also have a story of self-creation to tell? Yes, in Roy R. Gould’s account. He offers a compelling narrative of how the universe—with no instruction other than its own laws—evolved into billions of galaxies and gave rise to life, including humans who have been trying for millennia to comprehend it. Far from being a random accident, the universe is hard at work, extracting order from chaos. Making use of the best current science, Gould turns what many assume to be true about the universe on its head. The cosmos expands inward, not outward. Gravity can drive things apart, not merely together. And the universe seems to defy entropy as it becomes more ordered, rather than the other way around. Strangest of all, the universe is exquisitely hospitable to life, despite its being constructed from undistinguished atoms and a few unexceptional rules of behavior. Universe in Creation explores whether the emergence of life, rather than being a mere cosmic afterthought, may be written into the most basic laws of nature. Offering a fresh take on what brought the world—and us—into being, Gould helps us see the universe as the master of its own creation, not tethered to a singular event but burgeoning as new space and energy continuously stream into existence. It is a very old story, as yet unfinished, with plotlines that twist and churn through infinite space and time.

The poles undergo climate changes exceeding those in the rest of the world in terms of their speed and extent, and have a key role in modulating the climate of the Earth. Ecosystems adapted to polar environments are likely to become vulnerable to climate changes. Their responses allow us to analyse and foresee the impact of changes at lower latitudes. We need to increase our knowledge of the polar marine fauna of continental shelves, slopes and deep sea, as identifying the responses of species and communities is crucial to establishing efficient strategies against threats to biodiversity, using international and cross-disciplinary approaches. The IPY 2007-2009 was a scientific milestone. The outstanding contribution of Marine Biology is reflected in this volume and the next one on "Adaptation and Evolution in Marine Environments - The Impacts of Global Change on Biodiversity" from the series "From Pole to Pole", making these volumes a unique and invaluable component of the scientific outcome of the IPY.

The book integrates our understanding of the factors and processes underlying the evolution of multicellularity by providing several complementary perspectives (both theoretical and experimental) and using examples from various lineages in which multicellularity evolved. Recent years marked an increased interest in understanding how and why these transitions occurred, and data from various fields are providing new insights into the forces driving the several independent transitions to multicellular life as well as into the genetic and molecular basis for the evolution of this phenotype. The ultimate goal of this book is to facilitate the identification of general and unifying principles and mechanisms.

The present monograph is the fourth of six volumes which review the Hypotricha, a major group of the spirotrichs. The book is about the Gonostomatidae, the Kahliellidae, and some taxa of unknown position in the hypotrichs. Gonostomum was previously misclassified in the Oxytrichidae because its type species Gonostomum affine has basically an 18-cirri pattern, which is dominant in the oxytrichids. A new hypothesis, considering also molecular data, postulates that this 18-cirri pattern evolved in the last common ancestor of the hypotrichs and therefore it appears throughout the Hypotricha tree. The simple dorsal kinety pattern, composed of only three bipolar dorsal kineties, and gene sequence analyses strongly suggest that Gonostomum branches off rather early in the phylogenetic tree. Thus, the Gonostomatidae, previously synonymised with the oxytrichids, are reactivated to include the name-bearing type genus and other genera (e.g., Paragonostomum, Wallackia, Cladotricha) which have the characteristic gonostomatid oral apparatus. The Kahliellidae are a rather vague group mainly defined via the preservation of parts of the parental infraciliature. The kahliellids preliminary comprise, besides the name-bearing type genus Kahliella, genera such as Parakahliella and its African pendant Afrokahliella or the monotypic Engelmanniella. In total 68 species distributed in 21 genera and subgenera are revised. As in the previous volumes almost all morphological, morphogenetic, molecular, faunistic, and ecological data, scattered in almost 700 papers, are compiled so that the four volumes (Oxytrichidae, Urostyloidea, Amphisiellidae and Trachelostylidae, Gonostomatidae and Kahliellida) provide a detailed insight into the biology of almost 500 species of hypotrichs. The series is an up-to-date overview about this highly interesting taxon of spirotrichous ciliates mainly addressed to taxonomists, cell biologists, ecologists, molecular biologists, and practitioners.

This book summarizes the work of several decades, culminating in a revolutionary model of recent human evolution. It challenges current consensus views fundamentally, presenting in its support a mass of evidence, much of which has never been assembled before. This evidence derives primarily from archaeology, paleoanthropology, genetics, clinical psychology, neurosciences, linguistics and cognitive sciences. No even remotely similar thesis of recent human origins has ever been published, but some of the key elements of this book have been published by the author in major refereed journals in the last two years. Its implications are far-reaching and profoundly affect the way we perceive ourselves as a species. This book about what it means to be human is heavily referenced, with a bibliography of many hundreds of scientific entries.

The current volume focuses on behavioral similarities and differences within individual animals, larger populations, and species as a whole. Research from ecological, social ontogenetic, physiological, and other perspectives is presented to explicate specific behaviors, as well as to provide a more profound understanding of how behavior work influences thought about evolutionary processes.

Evolution is a critical challenge for many areas of science, technology and development of society. The book reviews general evolutionary facts such as origin of life and evolution of the genome and clues to evolution through simple systems. Emerging areas of science such as "systems biology" and "bio-complexity" are founded on the idea that phenomena need to be understood in the context of highly interactive processes operating at different levels and on different scales. This is where physics meets complexity in nature, and where we must begin to learn about complexity if we are to understand it. Similarly, there is an increasingly urgent need to understand and predict the evolutionary behavior of highly interacting man-made systems, in areas such as communications and transport, which permeate the modern world. The same applies to the evolution of human networks such as social, political and financial systems, where technology has tended to vastly increase both the complexity and speed of interaction, which is sometimes effectively instantaneous. The book contains reviews on such diverse areas as evolution experiments with microorganisms, the origin and evolution of viruses, evolutionary dynamics of genes and environment in cancer development, aging as an evolution-facilitating program, evolution of vision and evolution of financial markets.