The genome is more than a linear code as depicted by its DNA sequences as several interacting factors play a crucial role in shaping its organization and function. The complete sequences of a number of plant genomes and the recent advances of high-throughput technologies has fueled research efforts in the field of Plant Nuclear Biology unveiling numerous insights about the mechanisms underlying genome regulation. Genomic information is being integrated into molecular- and cellular-level mechanisms of the plant processes. A host of nuclear processes underlie key developmental processes as well as biotic and abiotic interactions. Non-coding RNAs have been increasingly recognized as players in gene expression and genome defense and integrity. However, in vivo, genomes exist as elaborate physical structures, and their functional properties are strongly determined by their cellular organization. Various types of subcellular structure have been identified in the nucleus, which are associated with transcription factors, RNA processing proteins and epigenetic regulators. Interestingly, these nuclear bodies display different behaviors in response to the environment. This book compiles a series of landmark discussions of the recent advances in plant nuclear biology research focusing in the functional relevance of the arrangement of genomes and nuclear processes that impact plant physiology and development.

The functional characterization of a key enzyme in the phosphatidylinositol (PI) signaling pathway in the model plant Arabidopsis thaliana is the focus of the research summarised in this thesis. Moreover, a particular focus is the exploration of the biological functions of Arabidopsis phophatidylinositol monophosphate 5-kinase 2 (PIP5K2) which catalyzes the synthesis of phophatidylinositol (4,5) bisphosphate, the precursor of two important second messengers (inositol 1,4,5-trisphosphate and diacylglycerol). Through molecular and genetic approaches, the author isolated and characterized the expression pattern, physiological functions and the underlying mechanism of Arabidopsis PIP5K2. It is found that PIP5K2 is involved in regulating lateral root formation and root gravity response through modulating auxin accumulation and polar auxin transport and also plays a critical role in salt tolerance. These findings shed new light on the crosstalk between PI signaling and auxin response, both of which have crucial regulatory roles in plant development.

This book delivers current state-of-the-science knowledge of tree ecophysiology, with particular emphasis on adaptation to a novel future physical and chemical environment. Unlike the focus of most books on the topic, this considers air chemistry changes (O3, NOx, and N deposition) in addition to elevated CO2 effects and its secondary effects of elevated temperature. The authors have addressed two systems essential for plant life: water handling capacity from the perspective of water transport; the coupling of xylem and phloem water potential and flow; water and nutrition uptake via likely changes in mycorrhizal relationships; control of water loss via stomata and its retention via cellular regulation; and within plant carbon dynamics from the perspective of environmental limitations to growth, allocation to defences, and changes in partitioning to respiration. The authors offer expert knowledge and insight to develop likely outcomes within the context of many unknowns. We offer this comprehensive analysis of tree responses and their capacity to respond to environmental changes to provide a better insight in understanding likelihood for survival, as well as planning for the future with long-lived, stationary organisms adapted to the past: trees.

This book details the plant-assisted remediation method, "phytoremediation", which involves the interaction of plant roots and associated rhizospheric microorganisms for the remediation of soil contaminated with high levels of metals, pesticides, solvents, radionuclides, explosives, crude oil, organic compounds and various other contaminants. Each chapter highlights and compares the beneficial and economical alternatives of phytoremediation to currently practiced soil removal and burial practices.

This text details the plant-assisted remediation method, "phytoremediation," which involves the interaction of plant roots and associated rhizospheric microorganisms for the remediation of soil contaminated with high levels of metals, pesticides, solvents, radionuclides, explosives, crude oil, organic compounds and various other contaminants. Each chapter highlights and compares the beneficial and economical alternatives of phytoremediation to currently practiced soil removal and burial practices.

This book provides an up-to-date overview of redox signaling in plant cells and its key role in responses to different stresses. The chapters, which are original works or reviews, focus on redox signaling states; cellular tolerance under different biotic and abiotic stresses; cellular redox homeostasis as a central modulator; redox homeostasis and reactive oxygen species (ROS); redox balance in chloroplasts and mitochondria; oxidative stress and its role in peroxisome homeostasis; glutathione-related enzyme systems and metabolism under metal stress; and abiotic stress-induced redox changes and programmed cell death. The book is an invaluable source of information for plant scientists and students interested in redox state chemistry and cellular tolerance in plants.

This volume focuses on recent advances in the biochemical and molecular analysis of different families of phospholipases in plants and their roles in signaling plant growth, development and responses to abiotic and biotic cues. The hydrolysis of membrane lipids by phospholipases produces different classes of lipid mediators, including phosphatidic acid, diacylglycerol, lysophospholipids, free fatty acids and oxylipins. Phospholipases are grouped into different families and subfamilies according to their site of hydrolysis, substrate usage and sequence similarities. Activating one or more of these enzymes often constitutes an early, critical step in many regulatory processes, such as signal transduction, vesicular trafficking, secretion and cytoskeletal rearrangements. Lipid-based signaling plays pivotal roles in plant stress responses, cell size, shape, growth, apoptosis, proliferation, and reproduction.

This book is a biography of a scientist who pioneered the development of plant pathology in Australia in the 19th and early 20th century, and was internationally acclaimed. After 20 years as a plant pathologist, he was asked to find the cause and cure of a serious physiological disorder of apples. While the cause eluded him, and everyone else for another 60 years, he again won international gratitude for the improvements he brought to the apple industry. However because he did not find the cause, he was deemed to have failed by his political masters who were malignantly influenced by a jealous rival. The discovery in 2012-2013 of government files covering the period of the bitter pit investigation, from 1911 to 1916; reveal the extent of the unjust criticism of McAlpine while history has vindicated the management recommendations made to reduce bitter-pit losses. The focus on bitter-pit management late in McAlpine's Career also meant that those who value his memory have been less aware of the remarkable achievements of McAlpine in the time before he left Great Britain - the brilliance of his teaching and drawing skills -featured in the early teaching texts for botany and zoology (the latter with his brother) which are now accessible on-line. The objective of this book is to demonstrate that (i) the view that McAlpine had failed in his quest was wrong and seriously unjust (ii) McAlpine achievements extend beyond plant pathology and include significant contributions to the 19th century teaching of botany and zoology, contributions which reinforce the adage - a picture is worth a 1,000 words.

This volume covers broad aspects of cell expansion in three different cell types: root hairs, pollen tubes, and hypocothyl cells. Chapters focus on the cutting-edge methods to study in detail several complex aspects of cell expansion such as secretion, endocytosis and recycling, cellular signaling and trafficking, and protein and polysaccharides cell wall biosynthesis in real time during cell expansion. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Plant Cell Expansion: Methods and Protocols is an essential reference book for plant scientist, molecular, and cell biologist as well as plant biochemists .

Plant Endosomes: Methods and Protocols explores a collection of protocols and techniques to analyze in vivo trafficking of endocytic/endosomal cargo, including lipids, fluids, proteins and ligands, ultrastructural features of endosomes by high-pressure freezing/freeze-substitution and electron tomography, as well as protein-protein interactions in the endosomal and endomembrane system. The volume continues with coverage of the sorting defects in the transport of vacuolar storage proteins, function conservation of plant endosomal proteins, endosomal trafficking during plant responses to pathogens, protein composition of endosomes and endocytic vesicles, ubiquitination of endosomal cargo proteins and the identification of novel endosomal components by chemical genomics and proteomics. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols and tips on troubleshooting and avoiding known pitfalls. Detailed and practical, Plant Endosomes: Methods and Protocols gathers contributions from many leading and emerging plant membrane trafficking researchers in order to promote and facilitate novel studies and ideas in this vital field.

This book covers the key features of nitric oxide (NO) in plants. Comprising nine chapters, Part I highlights its metabolism and identification in plants. Part II, which consists of eight chapters, focuses on the chemical, physical and biochemical properties of the NO molecule and its derivatives; on its functional role and mode of action; and on its signaling and interaction with phytohormones, mineral nutrients, biomolecules, ions and ion channels in plants under abiotic stresses. Combining the expertise of leading researchers in the field, the book provides a concise overview of plant NO biology and offers a valuable reference work.

This book focuses on the mechanistic (microscopic) understanding of radionuclide uptake by plants in contaminated soils and potential use of phytoremediation. The key features concern radionuclide toxicity in plants, how the radioactive materials are absorbed by plants, and how the plants cope with the toxic responses. The respective chapters examine soil classification, natural plant selection, speciation of actinides, kinetic modeling, and case studies on cesium uptake after radiation accidents. Radionuclide contaminants pose serious problems for biological systems, due to their chemical toxicity and radiological effects. The processes by which radionuclides can be incorporated into vegetation can either originate from activity interception by external plant surfaces (either directly from the atmosphere or from resuspended material), or through uptake of radionuclides via the root system. Subsequent transfer of toxic elements to the human food chain is a concrete danger. Therefore, the molecular mechanisms and genetic basis of transport into and within plants needs to be understood for two reasons: The effectiveness of radionuclide uptake into crop plants – so-called transfer coefficient – is a prerequisite for the calculation of dose due to the food path. On the other hand, efficient radionuclide transfer into plants can be made use of for decontamination of land – so-called phytoremediation, the direct use of living, green plants for in situ removal of pollutants from the environment or to reduce their concentrations to harmless levels.

This book focuses on the evolution of plant viruses, their molecular classification, epidemics and management, covering topics relating to evolutionary mechanisms, viral ecology and emergence, appropriate analysis methods, and the role of evolution in taxonomy. The currently emerging virus species are increasingly becoming a threat to our way of life, both economically and physically. Plant viruses are particularly significant as they affect our food supply and are capable of rapidly spreading to new plant species. In basic research, plant viruses have become useful models to analyze the molecular biology of plant gene regulation and cell-cell communication. The small size of DNA genome of viruses possesses minimal coding capacity and replicates in the host cell nucleus with the help of host plant cellular machinery. Thus, studying virus cellular processes provides a good basis for explaining DNA replication, transcription, mRNA processing, protein expression and gene silencing in plants. A better understanding of these cellular processes will help us design antiviral strategies for plants. The book provides in-depth information on plant virus gene interactions with hosts, localization and expression and the latest advances in our understanding of plant virus evolution, their responses and crop improvement. Combining characterization of plant viruses and disease management and presenting them together makes it easy to compare all aspects of resistance, tolerance and management strategies. As such, it is a useful resource for molecular biologists and plant virologists alike.

This volume addresses recent developments in weed science. These developments include conservation agriculture and conservation tillage, climate change, environmental concerns about the runoff of agrochemicals, resistance of weeds and crops to herbicides, and the need for a vastly improved understanding of weed ecology and herbicide use. The book provides details on harnessing knowledge of weed ecology to improve weed management in different crops and presents information on opportunities in weed management in different crops. Current management practices are also covered, along with guidance for selecting herbicides and using them effectively. Written by experts in the field and supplemented with instructive illustrations and tables, Recent Advances in Weed Management is an essential reference for agricultural specialists and researchers, government agents, extension specialists, and professionals throughout the agrochemical industry, as well as a foundation for advanced students taking courses in weed science.

During the last ten years, knowledge about the multitude of adaptive responses of plants to low oxygen stress has grown immensely. The oxygen sensor mechanism has been discovered, the knowledge about the interaction network of gene expression is expanding and metabolic adaptations have been described in detail. Furthermore, morphological changes were investigated and the regulative mechanisms triggered by plant hormones or reactive oxygen species have been revealed. This book provides a broad overview of all these aspects of low oxygen stress in plants. It integrates knowledge from different disciplines such as molecular biology, biochemistry, ecophysiology and agricultural / horticultural sciences to comprehensively describe how plants cope with low oxygen stress and discuss its ecological and agronomical consequences. This book is written for plant scientists, biochemists and scientists in agriculture and ecophysiology.

Nutrient Use Efficiency in Plants: Concepts and Approaches is the ninth volume in the Plant Ecophysiology series. It presents a broad overview of topics related to improvement of nutrient use efficiency of crops. Nutrient use efficiency (NUE) is a measure of how well plants use the available mineral nutrients. It can be defined as yield (biomass) per unit input (fertilizer, nutrient content). NUE is a complex trait: it depends on the ability to take up the nutrients from the soil, but also on transport, storage, mobilization, usage within the plant, and even on the environment. NUE is of particular interest as a major target for crop improvement. Improvement of NUE is an essential pre-requisite for expansion of crop production into marginal lands with low nutrient availability but also a way to reduce use of inorganic fertilizer.

This book reviews the current state of information on reactive oxygen and nitrogen species and their role in cell communication during plant growth, development and adaptation to stress conditions. It addresses current research advances made in the area of reactive oxygen and nitrogen species (ROS and RNS) signaling. These free radical molecules are important in plant-microbe interactions, responses to abiotic stress, stomatal regulation and a range of developmental processes. Due to their short half-life, high diffusion capability and ability to react with different components in the cell, ROS and RNS participate in various processes connected with signaling and communication in plants. The book's respective chapters address the latest advances made in the niche area of ROS and RNS in plants. It offers a valuable guide for researchers and students alike, providing insights into cutting-edge free radical research. The information on specialized topics presented is also highly relevant for applied fields such as food security, agricultural practices and medicinal use of plants.

This book focuses on morphological and anatomical strategies developed by halophytes during evolution that allow them to survive in high-salt environments. These adaptive strategies refer to well integrated structural features, such as succulence, salt secretion (salt glands and vesicular hairs), aerenchyma, Kranz anatomy, bulliform cells, successive cambia, tracheoidioblasts and endodermis with pronounced Casparian strips. The authors present cross sections of the roots, stems and leaves of 62 halophyte species belonging to 18 families from different habitats and climates (temperate, Mediterranean). They also discuss the ecological, physiological and evolutionary aspects of the various adaptive structures in an integrative way. Beginning with the structural level, this book offers novel insights into the ecology of halophytes and opens new perspectives for the identification of salt-tolerant crop plants or halophytes that can be used for ecological purposes, such as bio-remediation and revegetation.

The first part of the book presents the evolution of plants starting from photosynthetic cells to topics like Gymnosperms and Angiosperms, including the evolution of the breeding system. Geological and molecular data were used, helping us to show with more details each of the phases presented. Also, specialization of the reproductive systems such as evolution of unissexuality (dioecy and monoecy), evolution of self-incompatibility, selfing fertilization and mixed mating systems were considered. The last part discusses the biology and genetics of the reproductive systems and shows the strategies that modern plants use in asexual reproduction (vegetative and apomictic reproduction) and sexual reproduction. In addition, the sexual reproduction topics such as gametogenesis, the genetic control of reproductive organs, systems that promote outcrossing, selfing and mixed mating systems were also included.

This book is devoted to the fascinating superfamily of plant ATP-binding cassette (ABC) transporters and their variety of transported substrates. It highlights their exciting biological functions, covering aspects ranging from cellular detoxification, through development, to symbiosis and defense. Moreover, it also includes a number of chapters that center on ABC transporters from non-Arabidopsis species. ABC proteins are ubiquitous, membrane-intrinsic transporters that catalyze the primary (ATP-dependent) movement of their substrates through biological membranes. Initially identified as an essential aspect of a vacuolar detoxification process, genetic work in the last decade has revealed an unexpectedly diverse variety of ABC transporter substrates, which include not only xenobiotic conjugates, but also heavy metals, lipids, terpenoids, lignols, alkaloids and organic acids. The discovery that members of the ABCB and ABCG family are involved in the movement of phytohormones has further sparked their exploration and provided a new understanding of the whole family. Accordingly, the trafficking, regulation and structure-function of ABCB-type auxin transporters are especially emphasized in this book.

This book provides extensive and comprehensive information to researchers and academicians who are interested in radionuclide contamination, its sources and environmental impact. It is also useful for graduate and undergraduate students specializing in radioactive-waste disposal and its impact on natural as well as manmade environments. A number of sites are affected by large legacies of waste from the mining and processing of radioactive minerals. Over recent decades, several hundred radioactive isotopes (radioisotopes) of natural elements have been produced artificially, including 90Sr, 137Cs and 131I. Several other anthropogenic radioactive elements have also been produced in large quantities, for example technetium, neptunium, plutonium and americium, although plutonium does occur naturally in trace amounts in uranium ores. The deposition of radionuclides on vegetation and soil, as well as the uptake from polluted aquifers (root uptake or irrigation) are the initial point for their transfer into the terrestrial environment and into food chains. There are two principal deposition processes for the removal of pollutants from the atmosphere: dry deposition is the direct transfer through absorption of gases and particles by natural surfaces, such as vegetation, whereas showery or wet deposition is the transport of a substance from the atmosphere to the ground by snow, hail or rain. Once deposited on any vegetation, radionuclides are removed from plants by the airstre am and rain, either through percolation or by cuticular scratch. The increase in biomass during plant growth does not cause a loss of activity, but it does lead to a decrease in activity concentration due to effective dilution. There is also systemic transport (translocation) of radionuclides within the plant subsequent to foliar uptake, leading the transfer of chemical components to other parts of the plant that have not been contaminated directly.

This book is an overview of our current understanding of aluminium toxicity and tolerance in plants. It covers all relevant aspects from molecular and cellular biology, to genetic approaches, root biology and plant physiology. The contribution of arbuscular mycorrhizal fungi to alleviating aluminium toxicity is also discussed. Over 40% of total agricultural land resources are acidic in nature, with aluminium being the major toxicant. Plant roots are particularly susceptible to aluminium stress, but much of the complex mechanism underlying its toxicity and tolerance is unknown and aluminium stress perception in plants remains poorly understood. The diverse facets of aluminium stress adaptation covered in this book are relevant to plant biology students at all levels, as well researchers and it provides a valuable contribution to our understanding of plant adaptation to the changing environment.

This proceedings volume contains a selection of invited and contributed papers of the 9th International Workshop on Sulfur Metabolism in Plants, which was hosted by Heinz Rennenberg, Albert-Ludwigs-University Freiburg and was held at Schloss Reinach, Freiburg-Munzigen, Germany from April 14-17, 2014. The focus of this workshop was on molecular physiology and ecophysiology of sulfur in plants and the content of this volume presents an overview on the current research developments in this field.

The sequencing of genomes has been completed for an increasing number of crop species, and researchers have now succeeded in isolating and characterising many important QTLs/genes. High expectations from genomics, however, are waving back toward the recognition that crop physiology is also important for realistic improvement of crop productivity. Complex processes and networks along various hierarchical levels of crop growth and development can be thoroughly understood with the help of their mathematical description - modelling. The further practical application of these understandings also requires quantitative predictions. In order to better support design, engineering and breeding for new crops and cultivars for improving agricultural production under global warming and climate change, there is an increasing call for an interdisciplinary research approach, which combines modern genetics and genomics, traditional physiology and biochemistry, and advanced bioinformatics and modelling. Such an interdisciplinary approach has been practised in various research groups for many years. However, it does not seem to be fully covered in the format of book publications. We want to initiate a book project on crop systems biology - narrowing the gaps between genotypes and phenotypes and the gaps between crop modelling and genetics/genomics, for publication in 2013/2014. The book will be meant for those scientists and graduate students from fundamental plant biology and applied crop science who are interested in bridging the gap between these two fields. We have invited a group of scientists (who have very good track records in publishing excellent papers in this field or in a closely related area) to contribute chapters to this new book, and they have agreed to do so.

Chloroplast development is a key feature of leaf developmental program. Recent advances in plant biology reveal that chloroplasts also determine the development, the structure and the physiology of the entire plant. The books, published thus far, have emphasized the biogenesis of the organelle, but not the events associated with the transformation of the mature chloroplast to the gerontoplast during senescence. This book, with 28 chapters, is unique because it describes how the chloroplast matures and how it is subsequently transformed to become the gerontoplast during senescence, a process required for nutrient recycling in plants. This book includes a state-of-the-art survey of the current knowledge on the regulation and the mechanisms of chloroplast development. Some of the chapters critically discuss the signaling process, the expression potential of plastid DNA, the interaction of cellular organelles, and the molecular mechanisms associated with the assembly and the disassembly of organellar complexes and finally the modulation of chloroplast development by environmental signals.