This book presents the current state of the art in peanut genomics, focusing particularly on the latest genomic findings, tools and strategies employed in genome sequencing, transcriptomes and analysis, availability of public and private genomic resources, and ways to maximize the use of this information in peanut breeding programs. Further, it demonstrates how advances in plant genomics can be used to improve crop breeding. The peanut or groundnut (Arachis hypogaea L. Millsp) is a globally important grain legume and oilseed crop, cultivated in over 100 countries and consumed in the form of roasted seeds, oil and confectionary in nearly every country on Earth. The peanut contributes towards achieving food and nutritional security, in addition to financial security through income generation; as such, it is also vital to the livelihood of the poor in the developing world. There have been significant advances in peanut research, especially in the last five years, including sequencing the genome of both diploid progenitors, and the availability of tremendous transcriptome resources, large-scale genomic variations that can be used as genetic markers, genetic populations (bi- and multiparent populations and germplasm sets), marker-trait associations and molecular breeding products. The immediate availability of the genome sequence for tetraploid cultivated peanuts is the most essential genomic resource for achieving a deeper understanding of peanut traits and their use in breeding programs.

From the 4th - 8th of September 2011, the Eucarpia Fodder Crops and Amenity Grasses Section, held its 29th Meeting in the surroundings of Dublin Castle in Ireland. The theme of the meeting was 'Breeding strategies for sustainable forage and turf grass improvement'. Grasslands cover a significant proportion of the land mass of the world, and play a pivotal role in global food production. At the same time we are faced with several challenges that affect the way in which we think about this valuable set of resources. The population of the world is expected to exceed 9 billion by 2050, and increase of about one third relative to today's levels. This population increase will be focused in urban areas, and in what are currently viewed as "developing" countries, meaning that the buying power of this increased population will be greater - shifting the balance of demand from staple crops to high value items such as meat and dairy products. Overall that the world will have to approximately double agricultural output across all categories of food to meet the demands of this larger, urbanised population. This is occurring against a backdrop of equally large challenges in terms of global climate change. Agriculture is already a significant contributor to e.g. greenhouse gas emissions, deforestation and soil erosion. The situation is made more complex by an increased emphasis on biofuels as a solution for our imminent oil shortage, resulting in increased competition between land utilised for food and fuel. In short, agriculture must continue to feed the world, whilst not contributing to damaging it further. It must be sustainable. Plant breeding plays a significant but frequently understated role in meeting the challenges presented by this complex and changing scenario. However, plant breeding and improvement is itself undergoing radical change driven by technology. This book explores how forage and turf breeding is changing and adapting to meet these challenges using the technological advances being experienced in plant breeding as a whole.

Written for plant breeders, researchers and post-graduate students, this book provides a comprehensive review of the methods and underlying theoretical foundations used for selection in plant breeding programmes. The authors review basic elements of population and quantitative genetic theory, and consider in a unique way the tackling of the problems presented by soil heterogeneity and intergenotypic competition when selecting quantitative characters. The efficacy of different methods with regard to developing new varieties of crops are discussed for different modes of reproduction. This work provides a sound basis for informed decision making within the process of a selection programme.

Flowering and fruiting are key processes in the biology of higher plants, ensuring the transfer of genetic material from one generation to the next. In addition, as almost all of the world's agricultural and horticultural industries depend on the production of flowers, fruits and seeds, the study of the reproductive biology of cultivated plants is of fundamental importance to humankind. Surprisingly, therefore, this topic has received relatively little attention from environmental physiologists compared with studies on the growth and development of vegetative structures. This book, based on a meeting held by the Environmental Physiology Group of the Society of Experimental Biology, sets out to correct this deficiency. The topic is given a broad and comprehensive treatment, with chapters covering the onset of flowering through to the development and growth of fruits and seeds, and finally to ecological and evolutionary aspects of fruiting. This volume will therefore serve as a useful introduction to the various aspects of flowering and fruiting and will also provide a thorough general overview of the subject for students and researchers alike.

This book provides an overview of the Ocimum genus from its genetic diversity to genome sequences, metabolites and their therapeutic utilities. Tulasi, Ocimum tenuiflorum, as a member of the family Lamiaceae, is a sacred plant in India. The plants of this genus Ocimum are collectively referred to as Basil and holy basil is worshipped in the Hindu religion. Basils are reservoirs of diverse terpenoids, phenylpropanoids and flavonoids, in addition to commercially important aromatic essential oils. In 2016, two working groups in India published the genome sequence in two different genotypes of Ocimum tenuiflorum. To help the readers understand the complexities of the genus and different chemotypes, this book accumulates all the available information on this medicinal plant including the genome. The complete knowledge may enable researchers to generate specific chemotypes in basil either through conventional breeding or development of transgenic lines. It also makes it possible to investigate the medicinal nature of holy basil compared to different species of the same genus.

The future of agriculture strongly depends on our ability to enhance productivity without sacrificing long-term production potential. An ecologically and economically sustainable strategy is the application of microorganisms, such as the diverse bacterial species of plant growth promoting bacteria (PGPB). The use of these bio-resources for the enhancement of crop productivity is gaining worldwide importance.

"Bacteria in Agrobiology: Crop Ecosystems" describes the beneficial role of plant growth promoting bacteria with special emphasis on oil yielding crops, cereals, fruits and vegetables. Chapters present studies on various aspects of bacteria-plant interactions, soil-borne and seed-borne diseases associated with food crops such as rice, sesame, peanuts, and horticultural crops. Further reviews describe technologies to produce inoculants, the biocontrol of post harvest pathogens as a suitable alternative to agrochemicals, and the restoration of degraded soils.

This book - the first published on this topic in plants - presents the reader with an overview of recent research on nitric oxide (NO) in plants, which, in view of its empirical interest and its growth regulatory potential, is in the forefront of scientific endeavor in plant science. Subject matter is divided into two parts: Part 1 deals with NO and peroxynitrite biochemistry and regulative mechanisms as presently known in the Plant Kingdom and outlines some of the problems still awaiting clarification. Emphasis is placed on ethylene emission regulation, postharvest control, plant phytopathology and environmental stress tolerance. A further topic is plant NO, like Viagra, related to cyclic nucleotide turnover. Part 2 deals with environmental aspects of NO as an atmospheric pollutant and discusses endogenous means which plants at times employ to cope with this particular type of stress, and how their coping mechanisms may be harnessed for purposes of depollution and augmentation of nitrogen fertilization. The text, accompanied by a wealth of illustrations and annotated references, is intended for lecturers, advanced students and research scientists at universities and research institutes dealing with plant sciences and agriculture, as well as for environmental researchers.

Grassland farming in Europe was already established during the settlement of the rst farmers together with their domesticated animals after the last ice age. Since then, grassland provides the forage basis to feed ruminant animals for the p- duction of meat and milk. Depending on the ecological conditions and intensity of usage, various plant communities with different species developed, displaying a rich biodiversity. With the introduction of improved crop rotations at the end of the 16th century, grasses and legumes were also grown to an important extent as forage crops on arable land. In the last decades the importance of amenity grasses increased markedly, due to the demand of the society for new usages like landscape protection. Around 1900 interested farmers and academics identi ed the need for gra- land improvement through systematic selection and seed production. This marks the beginning of breeding and research in companies but also at universities and specialized research institutes. Plant collection started with many of the species that are still of importance today. The collected materials were grouped according to the intended use and some type of phenotypic selection was applied. Seed mul- plication of such populations was performed in pure stands and the harvested seed was marketed. Although the vegetative biomass and its quality are of utmost imp- tance in forage crop breeding, it is the seed yield potential which determines the commercial success of a new variety.

Grasslands are among the largest ecosystems in the world and consequently are of great importance to mankind. The genotypes of the species which are the main components of the grasslands have great influence on total outcome and successful utilization of grasslands. Therefore fodder crops and turf swards should be constantly improved to follow modern trends in agriculture production and landscape architecture. The wide range of breeding programs for forage and amenity species, as well as new breeding methods and techniques, is rapidly expanding the boundaries and is making it possible to achieve outstanding breeding results. This book includes papers presented at the 30th EUCARPIA Fodder Crops and Amenity Grasses Section Meeting. The challenging title of the book focuses on breeding of quantitative traits, which directly impact the profitability and sustainability of grasslands and fodder crops production, as well as on multidisciplinary approach in grassland research and utilisation. Included papers offer a unique collection of ideas and breakthroughs in the fields of fodder crops and amenity grasses breeding and genetics, as well as in the creative and innovative application of new tools in practical breeding.

This book was written by soybean experts to cluster in a single publication the most relevant and modern topics in soybean breeding. It is geared mainly to students and soybean breeders around the world. It is unique since it presents the challenges and opportunities faced by soybean breeders outside the temperate world.

The book is about the seed development in the model and crop plants. Seed development is a key step of the plant life cycle that determines the nutrient value of seeds - the life for human civilization, growth, and development. The nutrient value of seeds is mainly due to storage reserve products such as carbohydrates, lipids (triacylglycerols), and proteins. The book primarily focuses on application of the 21st century high-throughput technologies transcriptomics, proteomics, metabolomics, and systems biology in near complete understanding of the various processes involved in seed development in different crop plants. The book reveals how such technologies have revolutionized our understanding of the multilayer processes and regulations involved therein by generating large-scale datasets. Accumulated datasets provide basic knowledge to develop integrated strategies to eventually improve the nutritional value of plant seed and crop yield, a critical goal in food security issues around the globe.

Forage plant breeding has entered the genome era. This timely book reviews the latest advances in the development and application of molecular technologies which supplement conventional breeding efforts for our major forage crops. It describes the plethora of new technologies and tools now available for high-throughput gene discovery, genome-wide gene expression analysis, production of transgenic plants, genome analysis and marker-assisted selection as applied to forage plants. Detailed accounts are presented of current and future opportunities for innovative applications of these molecular tools and technologies in the identification, functional characterisation, and use of valuable genes in forage production systems and beyond. This book represents a valuable resource for plant breeders, geneticists, and molecular biologists, and will be of particular relevance to advanced undergraduates, postgraduates, and researchers with an interest in forage legumes and grasses.

This book highlights some of the most important biochemical, physiological and molecular aspects of plant stress, together with the latest updates. It is divided into 14 chapters, written by eminent experts from around the globe and highlighting the effects of plant stress (biotic and abiotic) on the photosynthetic apparatus, metabolites, programmed cell death, germination etc. In turn, the role of beneficial elements, glutathione-S-transferase, phosphite and nitric oxide in the adaptive response of plants under stress and as a stimulator of better plant performance is also discussed. A dedicated chapter addresses research advances in connection with Capsicum, a commercially important plant, and stress tolerance, from classical breeding to the recent use of large-scale transcriptome and genome sequencing technologies. The book also explores the significance of the liliputians of the plant kingdom (Bryophytes) as biomonitors/bioindicators, and general and specialized bioinformatics resources that can benefit anyone working in the field of plant stress biology. Given the information compiled here, the book will offer a valuable guide for students and researchers of plant molecular biology and stress physiology alike.

This book focuses on the conventional breeding approach, and on the latest high-throughput genomics tools and genetic engineering / biotechnological interventions used to improve rice quality. It is the first book to exclusively focus on rice as a major food crop and the application of genomics and genetic engineering approaches to achieve enhanced rice quality in terms of tolerance to various abiotic stresses, resistance to biotic stresses, herbicide resistance, nutritional value, photosynthetic performance, nitrogen use efficiency, and grain yield. The range of topics is quite broad and exhaustive, making the book an essential reference guide for researchers and scientists around the globe who are working in the field of rice genomics and biotechnology. In addition, it provides a road map for rice quality improvement that plant breeders and agriculturists can actively consult to achieve better crop production.

This book provides in-depth reviews of the effects of nanoparticles on the soil environment, their interactions with plants and also their potential applications as nanofertilizers and pesticides. It offers insights into the current trends and future prospects of nanotechnology, including the benefits and risks and the impact on agriculture and soil ecosystems. Individual chapters explore topics such as nanoparticle biosynthesis, engineered nanomaterials, the use of nanoclays for remediation of polluted sites, nanomaterials in water desalination, their effect on seed germination, plant growth, and nutrient transformations in soil, as well as the use of earthworms as bioremediating agents for nanoparticles. It is a valuable resource for researchers in academia and industry working in the field of agriculture, crop protection, plant sciences, applied microbiology, soil biology and environmental sciences.

Forest tree breeding has been ongoing for more than 70 years across Europe. It has successfully generated improved varieties for the major economical forest tree species. They are part of the present European forestry landscape and largely contribute to intensive wood production and other forest activities. In this book, we describe the state-of-art of breeding for the main forest tree species. We provide a comprehensive, unique and up-to-date overview of the major scientific results and breeding achievements gathered from the many programmes scattered across Europe. The book is divided into 10 chapters, each as a monograph corresponding to a species or group of species Abies spp., (Larix spp., Picea abies, Picea sitchensis, Pinus sylvestris, Pseudotsuga menziesii, and Mediterranean pines; Acer pseudoplatanus, Fraxinus excelsior, and Prunus avium). Each of them is written by a group of experts and focuses on the distribution and economical importance of the species; motivation for breeding and breeding objectives; intraspecific genetic variability, breeding populations and breeding strategy; forest reproductive material deployment including mass-propagation and, prospects and perspectives for joint research and breeding. The book is a unique and up-dated source of information for students, researchers and professionals interested in the genetics and domestication of forest tree species.

This comprehensive book details the most recent advances in the microalgae biological sciences and engineering technologies for biomass and biofuel production in order to meet the ongoing need for new and affordable sources of food, chemicals and energy for future generations. The chapters explore new microalgae cultivation techniques, including solid (biofilm) systems, and heterotrophic production methods, while also critically investigating topics such as combining wastewater as a source of nutrients, the effect of CO2 on growth, and converting biomass to methane through anaerobic digestion. The book highlights innovative bioproduct optimization and molecular genetic techniques, applications of genomics and metabolomics, and the genetic engineering of microalgae strains targeting biocrude production. The latest developments in microalgae harvesting and dewatering technologies, which combine biomass production with electricity generation, are presented, along with detailed techno-economic modeling. This extensive volume was written by respected experts in their fields and is intended for a wide audience of researchers and engineers.

This book discusses advances in our understanding of the structure and function of the maize genome since publication of the original B73 reference genome in 2009, and the progress in translating this knowledge into basic biology and trait improvement. Maize is an extremely important crop, providing a large proportion of the world's human caloric intake and animal feed, and serving as a model species for basic and applied research. The exceptionally high level of genetic diversity within maize presents opportunities and challenges in all aspects of maize genetics, from sequencing and genotyping to linking genotypes to phenotypes. Topics covered in this timely book range from (i) genome sequencing and genotyping techniques, (ii) genome features such as centromeres and epigenetic regulation, (iii) tools and resources available for trait genomics, to (iv) applications of allele mining and genomics-assisted breeding. This book is a valuable resource for researchers and students interested in maize genetics and genomics.

This volume contains comprehensive reviews on the current status of knowledge concerning the physiological, biochemical, and molecular events underlying plant morphogenesis processes authored by the main lecturers at the NATO Advanced Study Institute which was held in Heraklion, Crete, Greece, Septe

This book presents an overview of the state-of-the-art in barley genome analysis, covering all aspects of sequencing the genome and translating this important information into new knowledge in basic and applied crop plant biology and new tools for research and crop improvement. Unlimited access to a high-quality reference sequence is removing one of the major constraints in basic and applied research. This book summarizes the advanced knowledge of the composition of the barley genome, its genes and the much larger non-coding part of the genome, and how this information facilitates studying the specific characteristics of barley. One of the oldest domesticated crops, barley is the small grain cereal species that is best adapted to the highest altitudes and latitudes, and it exhibits the greatest tolerance to most abiotic stresses. With comprehensive access to the genome sequence, barley's importance as a genetic model in comparative studies on crop species like wheat, rye, oats and even rice is likely to increase.

This book provides an overview of the current state of knowledge of the genetics and genomics of the agriculturally important Cucurbitaceae plant family, which includes crops such as watermelon, melon, cucumber, summer and winter squashes, pumpkins, and gourds. Recent years have resulted in tremendous increases in our knowledge of these species due to large scale genomic and transcriptomic studies and production of draft genomes for the four major species, Citrullus lanatus, Cucumis melo, Cucumis sativus, and Cucurbita spp. This text examines genetic resources and structural and functional genomics for each species group and across species groups. In addition, it explores genomic-informed understanding and commonalities in cucurbit biology with respect to vegetative growth, floral development and sex expression, fruit growth and development, and important fruit quality traits.

Climate change is expected to have a drastic impact on agronomic conditions including temperature, precipitation, soil nutrients, and the incidence of disease pests, to name a few. To face this looming threat, significant progress in developing new breeding strategies has been made over the last few decades.

The first volume of "Genomics and Breeding for Climate-Resilient Crops" presents the basic concepts and strategies for developing climate-resilient crop varieties. Topics covered include: conservation, evaluation and utilization of biodiversity; identification of traits, genes and crops of the future; genomic and molecular tools; genetic engineering; participatory and evolutionary breeding; bioinformatics tools to support breeding; funding and networking support; and intellectual property, regulatory issues, social and political dimensions.

In a presentation to the Linnean Society of London in November 1831, the Scottish botanist Robert Brown (perhaps better known for his discovery of Brownian motion) mentioned almost as an afterthought that in orchid epidermal cells, a single "circular areola" could be seen, a "nucleus of the cell as perhaps it might be termed." Thus, the term "nucleus" (from Latin nucleus or nuculeus, "little nut" or kernel) was born for the compartment of the eukaryotic cell that contains the maj- ity of genetic information. One hundred and seventy-seven years later, we know that the nucleus is the site where genetic information is stored in the form of DNA, and where it is protected from damage, duplicated, divided, recombined, repaired, and "expressed." For the latter, the genetic information is faithfully transcribed from DNA to RNA, then released from the nucleus into the surrounding cytoplasm. Most likely translated into polypeptide chains, the information re-enters the nucleus in the form of diverse proteins that function in the processes listed above.

This book describes the sequencing efforts for Neem (Azadirachta indica A. Juss), one of the most versatile tropical evergreen tree species. The neem tree is a source of various natural products, including the potent biopesticide azadirachtin and limonoids, which have a broad spectrum of activity against insect pests and microbial pathogens. To identify genes and pathways in neem, three neem genomes and several transcriptomes are studied using next-generation sequencing technologies. Neem has been extensively used in Ayurveda, Unani and homoeopathic medicine and is often referred to as the 'village pharmacy' by natives due to its wealth of medicinal properties. Besides the description of the genome, this book discusses the neem microbiome and its role in the production of neem metabolites like salanin, nimbin and exopy-azadirachtin under in vitro conditions. It also highlights cell and tissue culture using various neem explants including the leaf, root, shoot, cambium, etc.

Red clover (Trifolium pratenseL. ) is an important forage of most ofthe tem- perate regions of the world, and atone time was the most importantlegume for hay in the United States. Oddly enough,red clover has never been the subject ofa monograph, although its culture has been discussed in many monograph chapters in the United States and Europe, perhaps beginning with those of Westgate and Hillman ina USDAFarmers Bulletin in 1911and early Swedish publications. The monograph "CloverScience and Technology" published in 1985 provides coverage of red clover along with other Trifolium species. It was theobjective of thepresentmonograph, "Red Clover Science" toexamine the literature published on red clover primarily after 1984. Perhaps the tim- ing of this publication is appropriate with the present interest in sustainable agriculture ofwhich red clover was so prominent in the past. Red clover and other forage legumes are valuable for reducing our reliance on fossil fuels, and for reducing pollution of our soil, water, and atmosphere primarily from use of chemical nitrogen and other fertilizers. In each chapter, an attempt was made to summarize the earlierinformation and to integrate the recent findings into this background. References earlier than 1984 are included only when necessary for historical purposes. No attempt was made to review the many aspects of clover culture that has been described thoroughly in earlier pub- lications. The literature covered is necessarily worldwide becauseofpresent greater emphasis in northern Eurasia than in United States.