This Volume covers protocols for in-silico approaches to hydrocarbon microbiology, including the selection and use of appropriate statistical tools for experimental design replication, data analysis, and computer-assisted approaches to data storage, management and utilisation. The application of algorithms to analyse the composition and function of microbial communities is presented, as are prediction tools for biodegradation and protein interactions. The basics of a major open-source programming language, Python, are explained. Protocols for calculating reaction kinetics and thermodynamics are presented, and modelling the environmental fate of hydrocarbons during bioremediation is explained. With the exception of molecular biology studies of molecular interactions, the use of statistics is absolutely essential for both experimental design and data analysis in microbiological research, and indeed in the biomedical sciences in general. Moreover, studies of highly varying systems call for the modelling and/or application of theoretical frameworks. Thus, while two protocols in this Volume are specific to hydrocarbon microbiology, the others are generic, and as such will be of use to researchers investigating a broad range of topics in microbiology and the biomedical sciences in general. Hydrocarbon and Lipid Microbiology ProtocolsThere are tens of thousands of structurally different hydrocarbons, hydrocarbon derivatives and lipids, and a wide array of these molecules are required for cells to function. The global hydrocarbon cycle, which is largely driven by microorganisms, has a major impact on our environment and climate. Microbes are responsible for cleaning up the environmental pollution caused by the exploitation of hydrocarbon reservoirs and will also be pivotal in reducing our reliance on fossil fuels by providing biofuels, plastics and industrial chemicals. Gaining an understanding of the relevant functions of the wide range of microbes that produce, consume and modify hydrocarbons and related compounds will be key to responding to these challenges. This comprehensive collection of current and emerging protocols will facilitate acquisition of this understanding and exploitation of useful activities of such microbes.

American trypanosomiasis, or Chagas disease, is caused by the protozoan parasite, Trypanosoma cruzi. Sixteen to eighteen million people are currently infected with this organism, and 45,000 deaths are attributed to the disease each year. Infection with T. cruzi is life-long, and 10-30% of persons who harbor the parasite chronically develop cardiac and gastrointestinal problems associated with the parasitosis. Although major progress has been made in recent years in reducing vector-borne and transfusion-associated transmission of T. cruzi, the burden of disability and death in persons chronically infected with the organism continues to be enormous. Eight to ten million persons born in countries in which Chagas disease is endemic currently reside in the United States, and epidemiologic and census data suggest that 50,000-100,000 are chronically infected with T. cruzi. The presence of these infected persons poses a risk of transmission of the parasite in the USA through blood transfusion and organ transplantation and several such cases have now been documented.

American Trypanosomiasis, volume seven of World Class Parasites is written for students of tropical medicine, parasitology and public health, for researchers and practitioners alike who wish to bring themselves abreast of the status quo with respect to this disease. It is intended to supplement formal textbooks, in order to broaden and illuminate current areas of scientific and public health concern. Uniquely for T. cruzi, this book addresses parasite, vector and host biology, the pathogenesis of Chagas disease and current and prospective therapeutics and control strategies in a single volume.

The edited book covers all potential products from microalgal-based biorefinery having the focus on contemporary technologies and future outlook. Along with the focus on microalgal biorefinery products, the book also focuses on biotechnological advances via the utilization of modern molecular biology, system biology, synthetic biology, or metabolic engineering approach in microalgal biorefinery. The development of any technologies has a direct effect on the human being and the environment, therefore, the socio-economic, techno-economic, and environmental impact of the microalgae-based biorefineries will also be included in the book. In microalgal biomass-based biorefinery different biofuel- biodiesel, bioethanol, bio-hydrogen, and value-added compounds such as carotenoids, fatty acids, and protein can be produced simultaneously. Understanding the technical advances to develop an integrated biorefinery approach with the motive of designing a consolidated self-sustainable microalga-based biorefinery. This book is equally beneficial for researchers and engineers in biomass-based biorefineries or the bachelors, master, or young budding graduate students as a textbook.

This book answers the question "What is it that viruses do?" by presenting three aspects of viral ecology. The first aspect explains how viruses affect the population diversity and energetics of their host communities. Perhaps the most notable example of this concept is our understanding that primary production within ecosystems often depends upon those viruses which serve as controllers of nutrient recycling, connecting the aquatic and terrestrial realms in ways that can be assessed locally and globally. The second aspect describes genetic partnerships which exist between hosts and their viruses. These include processes termed endogeny and lysogeny by which the host carries at least a partial genomic copy of the virus. Fluidity of these collective genomes is expressed on an evolutionary time scale and the mutual life cycles which they produce represent a forging of shared genomic fate that obligates partnership of the virus and its host. The viral sequences represent a source of potential benefit as well as potential peril for the host and can implement phenotypic changes in the host. Hosts often use those changes as tools. As humans, the most notable example would be that mammals rely upon temporary activation of their endogenous viral genes in order to successfully develop a placenta. The third aspect is defending the health of a host, which relies upon activity in two directions. Hosts often use their captured viral genes to identify and subsequently direct battle against invading viruses. This natural concept has been engineered for combating cancer, is useful for suppressing the detrimental consequences of genetic diseases, and has been developed to create targeted antiviral vaccines. But, the defense has to work in two directions and the host can use other symbiotic microorganisms as protection against its viruses. This book will appeal to a wide readership by providing a broad perspective of viral ecology, and all scientists will find it helpful for gaining a view of fields beyond their specialization.

Bridging the gap between laboratory observations and industrial practices, this work presents detailed information on recombinant micro-organisms and their applications in industry and agriculture. All recombinant microbes, bacteria, yeasts and fungi are covered.

Provides in-depth coverage of lectins and their interactions with micro-organisms and demonstrates how lectins function as probes for viral, bacterial, fungal and protozoal surfaces, as well as for blood group antigens.

Increase in consumer awareness of nutritional habits has placed automatic food analysis in the spotlight in recent years. However, food-logging is cumbersome and requires sufficient knowledge of the food item consumed. Additionally, keeping track of every meal can become a tedious task. Accurately documenting dietary caloric intake is crucial to manage weight loss, but also presents challenges because most of the current methods for dietary assessment must rely on memory to recall foods eaten. Food understanding from digital media has become a challenge with important applications in many different domains. Substantial research has demonstrated that digital imaging accurately estimates dietary intake in many environments and it has many advantages over other methods. However, how to derive the food information effectively and efficiently remains a challenging and open research problem. The provided recommendations could be based on calorie counting, healthy food and specific nutritional composition. In addition, if we also consider a system able to log the food consumed by every individual along time, it could provide health-related recommendations in the long-term. Computer Vision specialists have developed new methods for automatic food intake monitoring and food logging. Fourth Industrial Revolution [4.0 IR] technologies such as deep learning and computer vision robotics are key for sustainable food understanding. The need for AI based technologies that allow tracking of physical activities and nutrition habits are rapidly increasing and automatic analysis of food images plays an important role. Computer vision and image processing offers truly impressive advances to various applications like food analytics and healthcare analytics and can aid patients in keeping track of their calorie count easily by automating the calorie counting process. It can inform the user about the number of calories, proteins, carbohydrates, and other nutrients provided by each meal. The information is provided in real-time and thus proves to be an efficient method of nutrition tracking and can be shared with the dietician over the internet, reducing healthcare costs. This is possible by a system made up of, IoT sensors, Cloud-Fog based servers and mobile applications. These systems can generate data or images which can be analyzed using machine learning algorithms. Image Based Computing for Food and Health Analytics covers the current status of food image analysis and presents computer vision and image processing based solutions to enhance and improve the accuracy of current measurements of dietary intake. Many solutions are presented to improve the accuracy of assessment by analyzing health images, data and food industry based images captured by mobile devices. Key technique innovations based on Artificial Intelligence and deep learning-based food image recognition algorithms are also discussed. This book examines the usage of 4.0 industrial revolution technologies such as computer vision and artificial intelligence in the field of healthcare and food industry, providing a comprehensive understanding of computer vision and intelligence methodologies which tackles the main challenges of  food and health processing. Additionally, the text focuses on the employing sustainable 4 IR technologies through which consumers can attain the necessary diet and nutrients and can actively monitor their health. In focusing specifically on the food industry and healthcare analytics, it serves as a single source for multidisciplinary information involving AI and vision techniques in the food and health sector. Current advances such as Industry 4.0 and Fog-Cloud based solutions are covered in full, offering readers a fully rounded view of these rapidly advancing health and food analysis systems. 

Bacteriophages (viruses that infect bacteria) are fascinating organisms that have played and continue to play a key role in bacterial genetics and molecular biology. Phage can confer key phenotypes on their host for example, converting a non-pathogenic strain into a pathogen and they play a key role in regulating bacterial populations in all sorts of environments. The phage-bacterium relationship varies enormously, from the simple predator-prey model to a complex, almost symbiotic relationship that promotes the survival and evolutionary success of both. While infection of bacteria used in the fermentation industry can be very problematic and result in financial losses, in other scenarios, phage infection of bacteria can be exploited for industrial and/or medical applications. Interest in phage and phage gene products as potential therapeutic agents is increasing rapidly and is likely to have a profound impact on the pharmaceutical industry and biotechnology in general over the comi

This book brings together many of the world s leading experts in the fields of Antarctic terrestrial soil ecology, providing a comprehensive and completely up-to-date analysis of the status of Antarctic soil microbiology.

Antarctic terrestrial soils represent one of the most extreme environments on Earth.Once thought to be largely sterile, it is now known that these diverse and often specialized extreme habitats harbor a very wide range of different microorganisms.

Antarctic soil communities are relatively simple, but not unsophisticated. Recent phylogenetic and microscopic studies have demonstrated that these communities have well established trophic structuring and play a significant role in nutrient cycling in these cold and often dry desert ecosystems. They are surprisingly responsive to change and potentially sensitive to climatic perturbation.

Antarctic terrestrial soils also harbor specialized refuge habitats, where microbial communities develop under (and within) translucent rocks. These cryptic habitats offer unique models for understanding the physical and biological drivers of community development, function and evolution."

Covers developments in food safety and foodborne illness, organizing information to provide easy access to many topics, both general and specific. Comprehensive summaries of important advances in food science, compiled from over 550 sources worldwide, are presented.

Handbook of Methods in Aquatic Microbial Ecology is the first comprehensive compilation of 85 fundamental methods in modern aquatic microbial ecology. Each method is presented in a detailed, step-by-step format that allows readers to adopt new methods with little difficulty. The methods represent the state of the art, and many have become standard procedures in microbial research and environmental assessment. The book also presents practical advice on how to apply the methods. It will be an indispensable reference for marine and freshwater research laboratories, environmental assessment laboratories, and industrial research labs concerned with microbial measurements in water.

Anaerobic digestion is a major field for the treatment of waste and wastewater. Lately the focus has been on the quality of the effluent setting new demands for pathogen removal and for successful removal of unwanted chemicals during the anaerobic process. The two volumes on Biomethanation are devoted to presenting the state of art within the science and application of anaerobic digestion. They describe the basic microbiolgical knowledge of importance for understanding the processes of anaerobic bioreactors along with the newest molecular techniques for examining these systems. In addition, the applications for treatment of waste and wastewaters are presented along with the latest knowledge on process control and regulation of anaerobic bioprocesses. Together these two volumes give an overview of a growing area, which previously has never been presented in such a comprehensive way.

This detailed volume presents cutting-edge research protocols to study the structure and dynamics of bacterial and archaeal motility systems using bacterial genetics, molecular biology, biochemistry, biophysics, structural biology, cell biology, microscopy imaging, and molecular dynamics simulation. Beginning with a section on bacterial flagellar protein export and assembly, the book continues with chapters covering flagella-driven motility of bacteria, archaella-driven motility of archaea, type IV-driven twitching motility of bacteria, as well as adhesion-based gliding motility of bacteria and other unique motility systems. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step and readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.  Authoritative and thorough, Bacterial and Archaeal Motility is the ideal reference for researchers working in this vital area of microbiology.

The future of agriculture strongly depends on our ability to enhance productivity without sacrificing long-term production potential. An ecologically and economically sustainable strategy is the application of microorganisms, such as the diverse bacterial species of plant growth promoting bacteria (PGPB). The use of these bio-resources for the enhancement of crop productivity is gaining worldwide importance.

""Bacteria in Agrobiology: Plant Probiotics"" discusses the current trends and future prospects of beneficial microorganisms acting as Probiotics. Topics include the application for the aboveground fitness of plants, in mountain ecosystems, in tropical and Mediterranean forests, and in muga sericulture. Further aspects are "Arabidopsis" as a model system for the diversity and complexity of plant responses, plant parasitic nematodes, nitrogen fixation and phosphorus nutrition."

This book explains the metabolic processes by which microbes obtain and control the intracellular availability of their required metal and metalloid ions. The book also describes how intracellular concentrations of unwanted metal and metalloid ions successfully are limited. Its authors additionally provide information about the ways that microbes derive metabolic energy by changing the charge states of metal and metalloid ions. Part one of this book provides an introduction to microbes, metals and metalloids. It also helps our readers to understand the chemical constraints for transition metal cation allocation. Part two explains the basic processes which microbes use for metal transport. That section also explains the uses, as well as the challenges, associated with metal-based antimicrobials. Part three gives our readers an understanding that because of microbial capabilities to process metals and metalloids, the microbes have become our best tools for accomplishing many jobs. Their applications in chemical technology include the design of microbial consortia for use in bioleaching processes that recover metal and metalloid ions from industrial wastes. Many biological engineering tasks, including the synthesis of metal nanoparticles and similar metalloid structures, also are ideally suited for the microbes. Part four describes unique attributes associated with the microbiology of these elements, progressing through the alphabet from antimony and arsenic to zinc.

Foods fermented with lactic acid bacteria are an important part of the human diet. Lactic acid bacteria play an essential role in the preservation of food raw materials and contribute to the nutritional, organoleptic, and health properties of food products and animal feed. The importance of lactic acid bacteria in the production of foods throughout the world has resulted in a continued scientific interest in these micro-organisms over the last two decades by academic research groups as well as by industry. This research has resulted in a number of important scientific breakthroughs and has led to new applications. The most recent of these advances is the establishment of the complete genome sequences of a number of different lactic acid bacterial species.

To communicate and stimulate the research on lactic acid bacteria and their applications, a series of tri-annual symposia on lactic acid bacteria was started in 1983 under the auspices of the Netherlands Society for Microbiology (NVVM), which was later also supported by the Federation of European Microbiological Societies (FEMS). The aim of these state-of-the-art symposia is to offer a unique platform for universities, institutes, and industry in this area of biotechnology, to present recent work, to obtain information on new developments, and to exchange views with colleagues from all over the world on scientific progress and applications. The growing number of participants at these symposia has been a clear demonstration of the interest of the international industrial and scientific community in this area of research.

The 7th Symposium is based on a number of plenary lectures that review the scientific progress of the last years in the different areas of research on lactic acid bacteria, and which are documented in this special issue of Antonie van Leeuwenhoek.

This detailed book provides a collection of protocols for numerous experimental approaches perfected by the authors for lactic acid bacteria (LAB) research. Split in to three parts, the volume delves into the identification and metabolism of LABs, the applications of the bacteria for the food industry, as well as healthy functions of LAB. Written for the highly successful Methods in Molecular Biology series, chapters include introduction to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and accessible, Lactic Acid Bacteria: Methods and Protocols serves as an ideal inspiration for many research efforts in the domains of food science and health science.

This book provides salient information on all aspects of influenza/flu viruses affecting animals and humans. It specifically reviews the properties and replication of influenza viruses; their evolution and emergence; epidemiology; role of migratory birds in disease transmission; clinical signs in humans, animals, and poultry; pathogenesis and pathogenicity; public health importance and potential threats; diagnosis; prevention and control measures; and pandemic preparedness. Influenza/flu viruses evolve continuously and jump species causing epidemics as well as pandemics in both human and animals. During the past 150 years, various strains of influenza virus like the Spanish flu, Asian flu, Hong Kong flu, bird flu, and swine flu were responsible for high mortality in humans as well as birds. High mutation rates, antigenic shifts, drifts, reassortment phenomena, and the development of antiviral drug resistance all contribute to ineffective chemotherapy and vaccines against influenza viruses. Due to their devastating nature, high zoonotic implications, and high mortality in humans and poultry, they have a severe impact on the socioeconomic status of countries. Disease awareness, rapid and accurate diagnosis, surveillance, strict biosecurity, timely adoption of appropriate preventive and control measures, and pandemic preparedness are crucial to help in decreasing virus transmission, thus reducing clinical cases, deaths, and pandemic threats.

This book has arisen from the Second European Meeting on Bacterial Genetics and Ecology (Bageco-2) held at the University of Wales, College of Cardiff which we organised on 11-12 April 1989. The meeting was attended by some 60 participants from eight European countries and was made possible by partial financial support from the Commission of the European Communities (CEC) and Imperial Chem ical Industries (UK) Ltd. The meeting was organised to discuss modern developments in the genetics of bacteria in aquatic and terrestrial habitats. It followed on from, and complemented, the first meeting of this series organised by Jean-Pierre Gratia in Brussels during April 1987 which concentrated more on medical and epidemiological issues. ! The next meeting will be organised by Michel J. Gauthier in 1991 at Nice, France. If you have been fired with enthusiasm for ecological bacterial genetics after having read this book, and want to attend the next meeting but did not hear about the one in Cardiff, you should write to Dr Gauthier to be put on the address list. A lot is now known about bacterial genetics at the physiological, biochemical and molecular level, and bacterial ecology has developed rapidly over the last 20 years. However, until very recently, few researchers have crossed the divide and linked these two specialisms.

Over the last decade, interest in mycoplasmas has been greatly sti- lated by the spread of contagious bovine pleuropneumonia (CBPP), caused by Mycoplasma mycoides subsp. mycoides SC, in Europe and Africa and the discovery of a possible association between mycoplasmas and AIDS. During this period there has also been a recognition by control authorities and int- national organizations, including the Office International des Epizooties, that mycoplasmas are major causes of economic loss in livestock and continue to be a problem in humans as a result of a range of chronic respiratory and urogenital diseases. However, it is likely that the true significance of my- plasmas is still underestimated because of the difficulties in working with these extremely fastidious microorganisms. Advances in such laboratory technology as DNA amplification has enabled the detection of unrecoverable mycoplasmas in tissue samples and this will provide us with a better understanding of their role in disease. Important developments have also been seen in more conv- tional areas such as serological tests and media formulation enabling improved recovery and identification. Mycoplasma Protocols provides in a single volume up-to-date and easy-- follow methods for the detection, isolation, identification, and characterization of mycoplasmas, with a major emphasis on those of medical and veterinary significance. It also includes biochemical, genetic, and molecular techniques that will form the basis of understanding pathogenicity and, particularly, - hesion to host cells.

This second volume of a two-volume work reviews beneficial bioactive compounds from various microorganisms such as bacteria, fungi, cyanobacteria in plant diseases management and the postharvest management of fruits using microbial antagonists. Furthermore, it reviews the impact of climate change on food security and addressed the legal aspects of microbial biocontrol applications. The two-volume work "Microbial Biocontrol" introduces to mechanisms of plant-microbe interactions and explores latest strategies of how microbes can be applied in biocontrol and management of plant pathogens, replacing chemical fertilizers and pesticides. The book covers different groups of microorganisms such as bacteria, fungi, but also the interplay of entire microbiomes, and reviews their specific benefits in crop growth promotion, in enhancing the plants' tolerance against biotic and abiotic stress as well as in post-harvest management of various plant diseases. Novel tools such as CRISPR/Cas9 and microbe derived nanoparticles are also addressed besides the legal aspects of biocontrol applications. Today, rising global population and changing climatic conditions emerge as a major challenge for agronomist farmers and researchers in fulfilling the requirements of global food production. The conventional agricultural practices utilize undistributed use of chemical fertilizers and pesticides to enhance growth and yield of agricultural products and fresh foods, but their extensive and continuous use have led to a range of negative consequences on the food quality and safety, to environment as well as to human and animal health. Microbial biocontrol applications are presented as a solution, paving the way to a sustainable agriculture in compliance with the UN Sustainable Development Goals (SDG). The book addresses researchers in academia and agriculture.

This book compiles updated information about the role and health benefits of various bioactives in food. Different chapters are contributed by academicians, food scientists, technologists, and medical practitioners. The book addresses both theoretical and applied aspects of bioactive components and provides exhaustive knowledge about bioactive components. It comprises 27 chapters organized into 4 major sections covering topics in food science and technology, functional foods, and nutraceuticals. It provides perspectives for innovation, sources, applications, and sustainability in bioactive component research. The first section starts with introduction of bioactive components consisting of seven different chapters primarily focusing on the bioactive components and their sources with respective health benefits. The second section, comprising five different chapters, deals with different technological trends, regulations, and safety aspects of bioactive components. With eight chapters, the third section covers the role of bioactive components in human health and the role of functional foods in combating various health-related issues. The fourth section reviews functional foods through six chapters that cover the use of bioactive components in various food products. The book will prove useful to advanced food technology graduate and undergraduate students and research scholars, practicing food technologists in food and related industries, entrepreneurs, food-pharma researchers, and other scientists seeking information about smart and sustainable processes as well as information needed to design and develop these processes.

Advances in Applied Microbiology, Volume 121 continues the comprehensive reach of this widely read and authoritative review source in microbiology. Users will find invaluable references and information on a variety of areas relating to the topics of microbiology.

Advances in Virus Research, Volume 113 in this ongoing serial, highlights new advances in the field with this new volume presenting interesting chapters written by an international board of authors. Sections cover RNA modifications in viruses and virus infected cells, RNA silencing suppression, Animal models of alphavirus infection, and Enterovirus entry and spread.