In an age of antibiotic resistant infections, the study of biofilms is increasingly important. Microbes more than often exist in complex multi-species or polymicrobial communities, making infections difficult to detect, diagnose and treat. Given the increased focus on studying biofilms in research and laboratory settings, particularly under conditions that closely mimic the clinical state, it is important to get an overview of the recent methods, model systems and tools being developed and employed in this context. This book offers readers the opportunity to learn more about current methods being used in the investigation of multi-species biofilms, both in vivo and in vitro. For this, the book highlights new technologies built and designed for the study of multiple species within biofilm communities, including those that can be leveraged for the evaluation of antimicrobial treatment approaches. The application of these state-of-the-art techniques to further our understanding of multi-species biofilms will be discussed and the reader will learn how the clinical microenvironment and the development of biofilm communities are considered when developing such tools. With cutting-edge contributions from experts in the respective domains, this book will benefit translational and basic research scientists, as well as clinicians, and is an informative resource for educators and their students.

This detailed book provides a comprehensive series of innovative research techniques and methodologies applied to the parasite genomics research area, all applying different approaches to analyzing parasite genomes and furthering the study of genetic complexity and the mechanisms of regulation. Beginning with chapters on novel sequencing and the bioinformatics pipeline, the volume continues by exploring diagnostic approaches using genomic tools, host-parasite interactions, as well as the genomics of parasite-derived extracellular vesicles. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Parasite Genomics: Methods and Protocols creates a detailed picture of genomic approaches for researchers seeking a better understanding of characterizing parasite nucleic acid content.

Many physico-chemical and operational factors influence the performance, treatment costs and long-term stability of biofilters for the treatment of wastewater. An Innovative Role of Biofiltration in Wastewater Treatment Plants focuses on identifying the factors that affect biofiltration, such as the hydraulic retention time of the biofiltration system, the type and characteristics of the filter and the attached biomass, explains their influence and provides guidelines on how to control these factors to optimize better operation with respect to pollutant control present in wastewater treatment plants (WWTPs). The fundamental basis of treatment in biofilters is the action of pollutant-degrading microorganisms and consequently the book also discusses in depth about the microbial ecology of biofiltration. In addition, it explores the applications of biofiltration including the removal of emerging pollutants.

Biological remediation methods have been successfully used to treat polluted soils. While bacteria have produced good results in bioremediation for quite some time now, the use of fungi to decontaminate soils has only recently been established.

This volume of Soil Biology discusses the potentials of filamentous fungi in bioremediation. Fungi suitable for degradation, as well as genetically modified organisms, their biochemistry, enzymology, and practical applications are described. Chapters include topics such as pesticide removal, fungal wood decay processes, remediation of soils contaminated with heavy and radioactive metals, of paper and cardboard industrial wastes, and of petroleum pollutants.

Following an introduction to biogenic metal nanoparticles, this book presents how they can be biosynthesized using bacteria, fungi and yeast, as well as their potential applications in biomedicine. It is shown that the synthesis of nanoparticles using microbes is eco-friendly and results in reproducible metal nanoparticles of well-defined sizes, shapes and structures. This biotechnological approach based on the process of biomineralization exploits the effectiveness and flexibility of biological systems. Chapters include practical protocols for microbial synthesis of nanoparticles and microbial screening methods for isolating a specific nanoparticle producer as well as reviews on process optimization, industrial scale production, biomolecule-nanoparticle interactions, magnetosomes, silver nanoparticles and their numerous applications in medicine, and the application of gold nanoparticles in developing sensitive biosensors.

Microbial Biodegradation and Bioremediation: Techniques and Case Studies for Environmental Pollution, Second Edition describes the successful application of microbes and their derivatives for bioremediation of potentially toxic and relatively novel compounds in the environment. Our natural biodiversity and environment is in danger due to the release of continuously emerging potential pollutants by anthropogenic activities. Though many attempts have been made to eradicate and remediate these noxious elements, thousands of xenobiotics of relatively new entities emerge every day, thus worsening the situation. Primitive microorganisms are highly adaptable to toxic environments, and can reduce the load of toxic elements by their successful transformation and remediation. This completely updated new edition presents many new technologies and techniques and includes theoretical context and case studies in every chapter. Microbial Biodegradation and Bioremediation: Techniques and Case Studies for Environmental Pollution, Second Edition serves as a single-source reference and encompasses all categories of pollutants and their applications in a convenient, comprehensive format for researchers in environmental science and engineering, pollution, environmental microbiology, and biotechnology.

Microbial Diversity in Hotspots provides an introduction to microbial diversity and microbes in different hotspots and threatened areas. The book gives insights on extremophiles, phyllosphere and rhizosphere, covers fungal diversity, conservation and microbial association, focuses on biodiversity acts and policies, and includes cases studies. Microbes explored are from the coldest to the hottest areas of the world. Although hotspots are zones with extremely high microbiology activities, the knowledge of microbial diversity from these areas is very limited, hence this is a welcome addition to existing resources.

The methods included in Environmental Microbiology: Methods and Pro- cols can be placed in the categories "Communities and Biofilms," "Fermented Milks," "Recovery and Determination of Nucleic Acids," and the review s- tion, containing chapters on the endophytic bacterium, Bacillus mojavensis, the engineering of bacteria to enhance their ability to carry out bioremediation of aromatic compounds, using the hemoglobin gene from a strain of Vitreoscilla 23 spp., and the use of chemical shift reagents and Na NMR to study sodium gradients in microorganisms, all of which should be of interest to investigators in these fields. The subjects treated within the different categories also cover a wide range, with methods ranging from those for the study of marine organisms, through those for the investigation of microorganisms occurring in ground waters, including subsurface ground waters, to other types of environmental waters, to as varied subjects as the biodiversity of yeasts found in northwest Argentina. The range of topics described in the Fermented Milks section is smaller, but significant for investigators in areas concerned with milk as an item of foods for infants, small children, and even adults.

To cope with the increasing problems created by agrochemicals such as plant fertilizers, pesticides and other plant protection agents, biological alternatives have been developed over the past years. These include biopesticides, such as bacteria for the control of plant diseases, and biofertilizer to improve crop productivity and quality. Especially plant growth promoting rhizobacteria (PGPR) are as effective as pure chemicals in terms of plant growth enhancement and disease control, in addition to their ability to manage abiotic and other stresses in plants. The various facets of these groups of bacteria are treated in this Microbiology Monograph, with emphasis on their emergence in agriculture. Further topics are Bacillus species that excrete peptides and lipopeptides with antifungal, antibacterial and surfactant activity, plant-bacteria-environment interactions, mineral-nutrient exchange, nitrogen assimilation, biofilm formation and cold-tolerant microorganisms.

A Guide to the World of the Yeasts J. F. T. Spencer and D. M. Spencert As the well-known authority on yeasts, the late Professor Rose, frequently pointed out, it is impossible for one person to present, in a single volume, the details of the life, composiotion, habitats, relationships, and actual and potential uses to man kind of the 500 (at last count) known species of yeasts. This book confirms the truth of this statement. However, our aim is actually more modest than that, and this book is an attempt to introduce the general reader, and possibly some inter ested specialists, to the lives of the yeasts in their natural and more artificial habitats, their use by human beings, and to give some idea of the wonderfully complex activities within the yeast cell, the characteristics of the metabolism and molecular biology of yeasts, and the applications of these characteristics to life in the present-dayworld ofhuman existence. The book proceeds from a brief chapter on what is and is not known of the origins and early history of the yeasts, through a description of their classification, relationships, habitats and general life style, their external morphology and internal structures and mechanisms within their cells, the regulatory mechanisms controlling processes such as signal transmis sion, mating, cell fusion, and many others."

Additives have been used in the food sector for centuries, aiming to maintain or improve food quality in terms of freshness, appearance, texture and taste. Most food additives are synthetic chemical compounds classified as antioxidants, antimicrobials, colorants and sweeteners. In the last decades, several synthetic food additives have been correlated with adverse reactions in humans, which has caused the safety of synthetic food additives to be reviewed and discussed by international organizations. At the same time, there is increasing consumer demand for more natural and environmentally friendly food products and additives. Therefore, synthetic food additives have been replaced with natural food additives. Although the use of natural additives is a hot topic in food science, to date no book has systematically reviewed the application of natural additives in food products. Natural additives in foods presents an exhaustive analysis of the most recent advances in the application of natural additives in the food sector. Covering natural antioxidants, antimicrobials, colorants and sweeteners, this text also focuses on unconventional sources of natural additives, valorization and toxicological aspects, consumer attitudes and regulatory aspects. The main applications of natural antioxidants are fully covered, including polyphenols, ascorbic acid, carotenoids, tocopherols and proteins. Natural antimicrobial applications from polyphenols and essential oils to poly-L-Lysine are analyzed, as are natural colorants like anthocyanins, annatto, betalains and paprika. The encapsulation, trapping, and adsorption of natural additives are studied, and consumer perceptions and preferences are major focuses. Researchers will find up-to-date regulatory specifics for the United States and European Union. For any researcher in need of an expansive single source containing all relevant and updated information for the use of natural additives in foods, this book is a much needed addition to the field.

This Springer Protocols manual is a practical guide to the application of key molecular biology techniques in microbiological research. The focus is on experimental protocols, which are presented in an easy-to-follow way, as step-by-step procedures for direct use in the laboratory. Notes on how to successfully apply the procedures are included, as well as recommendations regarding materials and suppliers. In addition to the practical protocols, important background information and representative results of experiments using the described methods are presented. Researchers in all areas applying microbial systems, such as in molecular biology, genetics, pathology, and agricultural research will find this work of great value.

The book describes how plant biomass can be used as renewable feedstock for producing and further processing various products. Particular attention is given to microbial processes both for the digestion of biomass and the synthesis of platform chemicals, biofuels and secondary products. Topics covered include: new metabolic pathways of microbes living on green plants and in silage; using lignocellulosic hydrolysates for the production of polyhydroxyalkanoates; fungi such as Penicillium as host for the production of heterologous proteins and enzymes; bioconversion of sugar hydrolysates into lipids; production of succinic acid, lactones, lactic acid and organic lactates using different bacteria species; cellulose hydrolyzing bacteria in the production of biogas from plant biomass; and isoprenoid compounds in engineered microbes.

This book collates the latest trends and technological advancements in bioremediation, especially for its monitoring and assessment. Divided into 18 chapters, the book summarizes basic concepts of waste management and bioremediation, describes advancements of the existing technologies, and highlights the role of modern instrumentation and analytical methods, for environmental clean-up and sustainability. The chapters cover topics such as the role of microbial fuel cells in waste management, microbial biosensors for real-time monitoring of bioremediation processes, genetically modified microorganisms for bioremediation, application of immobilized enzyme reactors, spectroscopic techniques, and in-silico approaches in bioremediation monitoring and assessment. The book will be advantageous not only to researchers and scholars interested in bioremediation and sustainability but also to professionals and policymakers.

This book describes many novel approaches of microbial bioremediation including conventional and modern approaches, metagenomics, biosurfactants and nano-based bioremediation. Also presents up-to-date knowledge about biodegradation of solid and liquid contaminants in the rhizospheric zone by plant (rhizo)-microbiome interface. It also illustrates communication pathways based on evolving methodologies, bioinformatic tools which provides insights into the functional dynamics of bioremediation process by the host-microbiome interface. The different chapters explain the mechanism and outcomes during the process of bioremediation. The book broadly depicts the following: Advances in bioremediation through nanoremediation, rhizo-remediation, bioremediation of different ecosystems like polluted waters, industrial effluents, bioremediation of metal and organic pollutants, toxic dyes etc. The book is very useful for researchers and students in the fields of applied and environmental microbiology. It is also meant for industry experts and professionals working in the field of bioremediation and waste management.

This book discusses soil and recycling management in the Anthropocene era. Nitrogen shortage is one of nature's most important productivity regulators, but since the advent of technical nitrogen fixation (TNF), biological nitrogen fixation (BNF) input has nearly doubled, particularly in grass and arable lands covering over 13 million km2 of the Earth's surface. This book explores how monoculture grass, arable lands and forests are often over fertilized with TNF, animal slurries, sewage sludge, or municipally produced composts, and as a result, flora and fauna that have adapted to a nitrogen shortage in the soil will have to adjust to a surplus; those that are unable to adapt will disappear.

The biennial TNF-family conferences have been held over the past 20 years, from the time that TNF was cloned. These meetings have followed the enormous progress in this field. Much is now known about the members of the TNF ligand and receptor families, their signaling proteins, mechanisms of action and cellular functions. This volume is the proceedings of the 12th TNF International Conference, held in April 2009. This conference focuses on the physiological, pathophysiological, and medical significance of these important regulators. Sessions at the meeting specifically address their involvement in immunity, development, apoptosis, autoimmunity, cancer, and infection, the normal function and pathology of the neuronal system, as well as major unresolved questions about their mechanisms of action.

Biofilms -- Science and Technology covers the main topics of biofilm formation and activity, from basic science to applied aspects in engineering and medicine. The book presents a masterly discussion of microbial adhesion, the metabolism of microorganisms in biofilms, modelling of mass transfer and biological reaction within biofilms, as well as the behaviour of these microbial communities in industry (waste water treatment, heat exchanger biofouling, membranes, food processing) and in medicine (teeth, implants, prosthetic devices). Laboratory techniques and industrial monitoring methods are also presented. The book is directed at readers at the postgraduate level and is organised as a textbook, containing 11 chapters, a glossary, and a detailed subject index.

This edited compilation explores role of climate change in plant stresses, their mitigators, their role, mode of action and, application. The book discusses molecular and physiological mechanisms involved in plant stress physiology and the working mechanism of stress mitigators. It collates information from latest research conducted on plant stress mitigators, and highlights new strategies related to beneficial microorganisms that support plants under various stresses. These mitigators have gained attention of both farmers and industry for their application in organic farming. Plant stress mitigators have a huge global market. They follow different action mechanism for enhancing plant growth and stress tolerance capacity including nutrient solubilizing and mobilizing, bicontrol activity against plant pathogens, phytohormone production, soil conditioning and many more unrevealed mechanisms. This book elaborates stress alleviation action of different plant stress mitigators on crops grown under optimal and sub-optimal growing conditions. It addresses mainly three subthemes -- (1) Climate change impacts on plant and soil health (2) Microbe mediated plant stress mitigation and (3) Advances in plant stress mitigation. The book is a relevant reading for Post graduate students, researchers in the field of plant stress physiology, Plant-microbe interaction, biochemistry and plant molecular biology and industries related to seed production, biofertilizer and biopesticides.

Removal of Emerging Contaminants from Wastewater through Bio-nanotechnology showcases profiles of the nonregulated contaminants termed as "emerging contaminants," which comprise industrial and household persistent toxic chemicals, pharmaceuticals and personal care products (PPCPs), pesticides, surfactants and surfactant residues, plasticizers and industrial additives, manufactured nanomaterials and nanoparticles, microplastics, etc. that are used extensively in everyday life. The occurrence of "emerging contaminants" in wastewater, and their behavior during wastewater treatment and production of drinking water are key issues in the reuse and recycling of water resources. This book focuses on the exploitation of Nano-biotechnology inclusive of the state-of-the-art remediate strategies to degrade/detoxify/stabilize toxic and hazardous contaminants and restore contaminated sites, which is not as comprehensively discussed in the existing titles on similar topics available in the global market. In addition, it discusses the potential environmental and health hazards and ecotoxicity associated with the widespread distribution of emerging contaminants in the water bodies. It also considers the life cycle assessment (LCA) of emerging (micro)-pollutants with suitable case studies from various industrial sources.

This biography of Dr. Denis Parsons Burkitt, after whom the childhood cancer Burkitt's lymphoma was named, and who was a pioneer of the dietary fiber movement, paints a personal but holistic portrait of both the man and his life's work. Featuring excerpts from Dr. Burkitt's personal diaries, spanning seven decades from his boyhood to just before his passing, and extensive family archives, this book invites readers to follow Burkitt's journey through life and experience his tribulations and successes. Prof. John Cummings was a colleague of Dr. Burkitt and weaves the tale of his life through the lens of family, faith, and science. The journey takes Burkitt from his childhood in Ireland, a country undergoing major social upheaval, through his medical studies in Dublin, to army service in Africa in the midst of WWII and the independence movements that swept the continent in the following years. During his two decades spent in Uganda, working for the Colonial Medical Service, Burkitt made his first major contribution to cancer research - the characterization of Burkitt's lymphoma and its possible viral cause. Following his return to England in 1966, he turned his attention to the cause of 'Western Diseases' especially the role of dietary fibre in the prevention of disease and promotion of health. This earned him even wider international recognition and helped to inspire what is a vital field of research today. The book examines Burkitt's personal views of the world around him, including his experiences as a committed evangelical Christian who had been raised an Irish Protestant, and the challenges, both familial and cultural, that this elicited from and towards him and his scientific work. The lymphoma and later the fibre story propelled Denis into an orbit of worldwide travel, fame and many honours. An engaging speaker but man of great humility, always giving the credit for much of what he did to others, he left a legacy of evidence and ideas for the causes of cancer and prevention of disease from which we all now benefit.

An Integration of Phycoremediation Processes in Wastewater Treatment reviews the potential of microalgae to treat wastewater containing highly recalcitrant compounds whose degradation is not achieved by the conventional existing treatments. In addition, the book describes how the microalgae collected after wastewater treatment can be used for obtaining added-value products, hence closing the loop and contributing to a circular economy. Finally, the technoeconomical aspects of this green technology are addressed, along with the design and development of photobioreactors, genetic aspects, metagenomics and metabolomics.

Proceedings of a Workshop, ICARDA, Syria, April 14-17, 1986.