What are the models used in phylogenetic analysis and what exactly
is involved in Bayesian evolutionary analysis using Markov chain
Monte Carlo (MCMC) methods? How can you choose and apply these
models, which parameterisations and priors make sense, and how can
you diagnose Bayesian MCMC when things go wrong? These are just a
few of the questions answered in this comprehensive overview of
Bayesian approaches to phylogenetics. This practical guide: *
Addresses the theoretical aspects of the field * Advises on how to
prepare and perform phylogenetic analysis * Helps with interpreting
analyses and visualisation of phylogenies * Describes the software
architecture * Helps developing BEAST 2.2 extensions to allow these
models to be extended further. With an accompanying website
providing example files and tutorials (http://beast2.org/), this
one-stop reference to applying the latest phylogenetic models in
BEAST 2 will provide essential guidance for all users - from those
using phylogenetic tools, to computational biologists and Bayesian
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