Mechanics plays a central role in determining form and function in biology. This holds at the cellular, molecular and tissue scales. At the cellular scale, mechanics in?uences cell adhesion, cytoskeletal dynamics and the traction that the cell can generate on a given substrate. All of these in turn - fect the cellular functions of migration, mitosis, phagocytosis, endocytosis and stem cell differentiation among others. Indeed, if cells do not develop the appropriate stresses, they are unviable and die. These aspects of cell mechanics are frequently used by mainstream biologists, as traditional mechanicians may be surprised to learn. There is a growing view that many functions of the cell are mechanical in nature even though chemical signals play crucial roles in the processes. Free energy barriers control transitions between different conformations of vir- ally every macromolecule including DNA, RNA, the adhesion protein integrin, the motor protein myosin, and the proteins vinculin and talin that link the cytoskeleton to focal adhesions. The strain energy can be a signi?cant component of the total free energy barrier. For binding to take place, the macromolecules need to be in conf- mational states that expose chemical groups without steric hinderance. The kinetics of chemical reactions are therefore strongly in?uenced by the conformational strain energy.

A reissue of a classic book, intended for undergraduate courses in biophysics, biological physics, physiology, medical physics, and biomedical engineering. This is an introduction to mechanics, with examples and problems from the medical and biological sciences, covering standard topics of kinematics, dynamics, statics, momentum, and feedback, control and stability but with the emphasis on physical and biological systems. The book can be used as a supplement to standard introductory physics courses, as well as for medical schools, medical physics courses, and biology departments. The three volumes combined present all the major topics in physics. Originally published in 1974 from the authors typescript, this reissue will be edited, corrected, typeset, the art redrawn, and an index added, plus a solutions manual will also be available.

This volume focuses on latest research in therapeutic devices for cardiovascular, i.e. vascular and valvular and cardiac diseases. In the area of vascular therapies, aspects covered relate to latest research in small-diameter tissue-regenerative vascular grafts, one of the greatest persisting challenges in cardiovascular therapies, stent grafts and endovascular stents for percutaneous arterial interventions. Contributions on valvular therapies focus on tissue engineered and tissue regenerative prosthetic heart valves and valvular prostheses for trans-apical implantation including the challenges posed on the prosthesis design. The section on cardiac diseases aims at covering therapeutic advances for myocardial infarction and prevention of heart failure and on in vivo biomechanics of implantable cardiac pacemaker devices. A further section complements these three areas by presenting constitutive modelling of soft biological tissues of the cardiovascular system, an area imperative for advanced numerical and computational modelling in the development and optimisation of cardiovascular devices and therapies.

A "brain defibrillator" may be closer than we think. An epileptic seizure involves a paroxysmal change in the activity of millions of neurons. Feedback control of seizures would require an implantable device that could predict seizure occurrence and then deliver a stimulus to abort it. To examine the feasibility of building such a device, this text brings together experts in epilepsy, bio-engineering, and dynamical systems theory. Topics include the development of epileptic systems, seizure prediction, neural synchronization, wave phenomena in excitable media, and the control of complex neural dynamics using brief electrical stimuli.

The IUTAM Symposium on Flow in Collapsible Tubes and Past Other Highly Compliant Boundaries was held on 26-30 March, 2001, at the University of Warwick. As this was the first scientific meeting of its kind we considered it important to mark the occasion by producing a book. Accordingly, at the end of the Symposium the Scientific Committee met to discuss the most appropriate format for the book. We wished to avoid the format of the conventional conference book consisting of a large number of short articles of varying quality. It was agreed that instead we should produce a limited number of rigorously refereed and edited articles by selected participants who would aim to sum up the state of the art in their particular research area. The outcome is the present book. Peter W. Ca rpenter, Warwick Timothy J. Pedley, Cambridge May, 2002. VB SCIENTIFIC COMMITTEE Co-Chair: P.W. Carpenter, Engineering, Warwiek, UK Co-Chair: TJ. Pedley, DAMTP, Cambridge, UK V.V. Babenko, Hydromechanics, Kiev, Ukraine R. Bannasch, Bionik & Evolutionstechnik, TU Berlin, Germany C.D. Bertram, Biomedical Engineering, New South Wales, Australia M. Gad-el-Hak, Aerospace & Mechanical Engineering, Notre Dame, USA J.B. Grotberg, Biomedical Engineering, Michigan, USA. R.D. Kamm, Mechanical Engineering, MIT, USA Y. Matsuzaki, Aerospace Engineering, N agoya, Japan P.K. Sen, Applied Mechanics, IIT Delhi, India L. van Wijngaarden, Twente, Netherlands K-S. Yeo, Mechanical Engineering, NU Singapore.

Non-Newtonian properties on bubble dynamics and cavitation are fundamentally different from those of Newtonian fluids. The most significant effect arises from the dramatic increase in viscosity of polymer solutions in an extensional flow, such as that generated about a spherical bubble during its growth or collapse phase. In addition, many biological fluids, such as blood, synovial fluid, and saliva, have non-Newtonian properties and can display significant viscoelastic behaviour. This monograph elucidates general aspects of bubble dynamics and cavitation in non-Newtonian fluids and applies them to the fields of biomedicine and bioengineering. In addition it presents many examples from the process industries. The field is strongly interdisciplinary and the numerous disciplines involve have and will continue to overlook and reinvent each others' work. This book helps researchers to think intuitively about the diverse physics of these systems, to attempt to bridge the various communities involved, and to convey the interest, elegance, and variety of physical phenomena that manifest themselves on the micrometer and microsecond scales.

Physics and the life sciences have established new connections within the past few decades, resulting in biological physics as an established subfield with strong groups working in many physics departments. These interactions between physics and biology form a two-way street with physics providing new tools and concepts for understanding life, while biological systems can yield new insights into the physics of complex systems. To address the challenges of this interdisciplinary area, The Physics of Proteins: An Introduction to Biological Physics and Molecular Biophysics is divided into three interconnected sections. In Parts I and II, early chapters introduce the terminology and describe the main biological systems that physicists will encounter. Similarities between biomolecules, glasses, and solids are stressed with an emphasis on the fundamental concepts of living systems. The central section (Parts III and IV) delves into the dynamics of complex systems. A main theme is the realization that biological systems, in particular proteins, do not exist in unique conformations but can assume a very large number of slightly different structures. This complexity is captured in the concept of a free energy landscape and leads to the conclusion that fluctuations are crucial for the functioning of biological systems. The final chapter of this section challenges the reader to apply these concepts to a problem that appears in the current literature. An extensive series of appendices (Part V) provide descriptions of the key physical tools and analytical methods that have proven powerful in the study of the physics of proteins. The appendices are designed to be consulted throughout the section on protein dynamics without breaking the deductive flow of the logic in the central section of the book.

The crystallization of proteins and nucleic acids and/or their complexes has become more highly automated but is still often a trial and error based approach. In parallel, a number of X-ray diffraction based techniques have been developed which explain the physical reasons limiting the resulting crystallographic data and thus show how that data may be improved. Crystal growth is also pivotal in neutron crystallography, which establishes the hydrogen and hydration aspects. Thus this book is aimed at addressing the science behind obtaining the best and most complete structural data possible for biological macromolecules, so that the detailed structural biology and chemistry of these important molecules emerge. Crystal imperfections such as twinning and lattice disorders, as well as multiple crystal situations, and their possible remedies, are also described. The small crystal frontier in micro-crystal crystallography, crystallites in powders and finally down to the proposed single molecule structure determination of X-ray lasers are covered. Overall this interdisciplinary book will interest crystal growers, X-ray and neutron physicists and the biological crystallographers, including graduate students.

This book focuses on the assembly, organization and resultant collective dynamics of soft matter systems maintained away from equilibrium by an energy flux. Living matter is the ultimate example of such systems, which are comprised of different constituents on very different scales (ions, nucleic acids, proteins, cells). The result of their diverse interactions, maintained using the energy from physiological processes, is a fantastically well-organized and dynamic whole. This work describes results from minimal, biomimetic systems and primarily investigates membranes and active emulsions, as well as key aspects of both soft matter and non-equilibrium phenomena. It is shown that these minimal reconstitutions are already capable of a range of complex behaviour such as nonlinear electric responses, chemical communication and locomotion. These studies will bring us closer to a fundamental understanding of complex systems by reconstituting key aspects of their form and function in simple model systems. Further, they may also serve as the first technological steps towards artificial soft functional matter.

Heme and chlorophyll (Chl) are porphyrins. Porphyrins (also referred to as tetrapyrroles) are essential for life in the biosphere. Chlorophyll catalyzes the conversion of solar energy to chemical energy via the process of photosynthesis. Organic life in the biosphere is made possible by consumption of the chemical energy generated by photosynthesis. Hemes are the prosthetic groups of cytochromes which are involved in electron transport during oxidative phosphorylation and photosynthetic phosphorylation which generate ATP and NADPH. The latter are essential for many cellular functions. Chlorophyll on the other hands catalyzes the process of photosynthesis. Indeed, life in the biosphere depends on the process of photosynthesis which converts light energy, carbon dioxide and water into the chemical energy, required for the formation of food and fiber. Photosynthetic efficiency is controlled by extrinsic factors such as the availability of water, CO2, inorganic nutrients, ambient temperature and the metabolic and developmental state of the plant, as well as by intrinsic factors (Lien and San Pietro, 1975). The most important intrinsic factor is the efficiency of the photosynthetic electron transport system (PETS). Conventional agriculture is one of the few human activities that have not undergone a revolution to join other activities such as overcoming gravity by flying, and landing on the moon, crossing underwater the polar cap, and communicating wirelessly over long distances via electromagnetic waves. We now feel that enough biochemical and molecular biological knowledge has accumulated to render this dream amenable to experimentation. We believe that the time has come to bioengineer chloroplasts capable of synthesizing a short chain carbohydrate such as glycerol at rates that approach the upper theoretical limits of photosynthesis [Rebeiz, C. A. (2010) Investigations of possible relationships between the chlorophyll biosynthetic pathway and the assembly of chlorophyll-protein complexes and photosynthetic efficiency. In: Rebeiz, C. A. Benning, C., Bohnert, H.J., Daniell, H., Hoober J. K., Lichtenthaler, H. K., Portis , A. R., and Tripathy, B. C. eds. The chloroplast: Basics and Applications. Springer. The Netherlands, p 1-24]. In order to achieve this goal a thorough knowledge of the Chl biosynthetic pathway is needed along with knowledge in other domains (Rebeiz 2010). In this context, this monograph is devoted to an in depth discussion of our present knowledge of the Chl biosynthetic pathway. The complexity and biochemical heterogeneity of the Chl biosynthetic pathway and the relationship of this complexity to the structural and biosynthetic complexity of photosynthetic membranes will be emphasized. We will also emphasize in historical perspective, key stages in our understanding of the Chl biosynthetic heterogeneity. The reader should keep in mind that a complex biosynthetic process is only fully understood when it becomes possible to reconstitute in vitro every step of the process. We are not yet at this stage of understanding of thylakoid membrane biogenesis. Considerable progress has been achieved however, in the understanding of numerous facets of the Chl biosynthetic pathway, namely (a) detection and identification of various major and minor metabolic intermediates (b) precursor-product relationships between various intermediates, (c) structure and regulation of many enzymes of the pathway, and (d) the relationship of the Chl biosynthetic heterogeneity to the structural and functional heterogeneity of thylakoid membranes. In addition topics related to the development of Analytical techniques, Cell-free systems, Herbicides, Insecticides, and Cancericides are also discussed.

This volume - like the NATO Advanced Research Workshop on which it is based - addresses the fundamental science that contributes to our understanding of the potential risks from ecological terrorism, i.e. dirty bombs, atomic explosions, intentional release of radionuclides into water or air. Both effects on human health (DNA and systemic effects) and on ecosystems are detailed, with particular focus on environmentally relevant low-dose ranges. The state-of-the-art contributions to the book are authored by leading experts; they tackle the relevant questions from the perspectives of radiation genetics, radiobiology, radioecology, radiation epidemiology and risk assessment.

Transport properties of plant cuticles are important for different ?elds of modern plant sciences. Ecologists and physiologists are interested in water losses to the environment via the cuticle. Penetration of plant protecting agents and nutrients into leaves and fruits is relevant for research in agriculture and plant protection. Ecotoxicologists need to know the amounts of environmental xenobiotics which accumulate in leaves and other primary plant organs from the environment. For all of these studies suitable methods should be used, and a sound theoretical basis helps to formulate testable hypotheses and to interpret experimental data. Unnecessary experiments and experiments which yield ambiguous results can be avoided. In this monograph, we have analysed on a molecular basis the movement of molecules across plant cuticles. Based on current knowledge of chemistry and str- ture of cuticles, we have characterised the aqueous and lipophilic pathways, the nature and mechanisms of mass transport and the factors controlling the rate of movement. We have focused on structure-property relationships for penetrant tra- port, which can explain why water and solute permeabilities of cuticles differ widely among plant species. Based on this knowledge, mechanisms of adaptation to en- ronmental factors can be better understood, and rates of cuticular penetration can be optimised by plant physiologists and pesticide chemists.

This book highlights recent advances in and diverse techniques for exploring the plasma membrane's structure and function. It starts with two chapters reviewing the history of membrane research and listing recent advances regarding membrane structure, such as the semi-mosaic model for red blood cell membranes and the protein layer-lipid-protein island model for nucleated tissue cell membranes. It subsequently focuses on the localization and interactions of membrane components, dynamic processes of membrane transport and transmembrane signal transduction. Classic and cutting-edge techniques (e.g. high-resolution atomic force microscopy and super-resolution fluorescence microscopy) used in biophysics and chemistry are presented in a very comprehensive manner, making them useful and accessible to both researchers in the field and novices studying cell membranes. This book provides readers a deeper understanding of the plasma membrane's organization at the single molecule level and opens a new way to reveal the relationship between the membrane's structure and functions, making it essential reading for researchers in various fields.

Adhesion plays a major role in the bacterial lifestyle. Bacteria can adhere to organic and inorganic surfaces, to each other, and of course to host cells during pathogenesis. The focus of this book is: how are such adhesion phenomena best studied? Microbial genetics experiments have greatly enhanced our knowledge of what bacterial factors are involved in adhesion. For numerous reasons, though, biochemical and structural biology knowledge of the molecular interactions involved in adhesion are limited. One major problem has been a lack of interdisciplinary research and understanding in the field. On the one hand, the microbiologists lack detailed knowledge of the biophysical possibilities and have limited access to the frequently expensive instrumentation involved while on the other hand, the experts in these methods frequently do not have access to the biological materials, nor do they necessarily understand the biological questions to be answered. The purpose of this book is thus to overcome this gap in communication between researchers in biology, chemistry and physics and to display the many ways and means to investigate bacterial adhesion. We hope to stimulate new and ground-breaking research.

Optical microscopy and associated technologies advanced quickly after the introduction of the laser. The techniques have stimulated further development of optical imaging theory, including 3-dimensional microscopy imaging theory in spatial and frequency domains, the theory of imaging with ultrashort-pulse beams and aberration theory for high-numerical-aperture objectives. This book introduces these new theories in terms of modern optical microscopy. It consists of seven chapters including an introduction. The chapters are organized to minimize cross-referencing. Comparisons with classical imaging theory are made when the new imaging theory is introduced. The book is intended for senior undergraduate students in courses on optoelectronics, optical engineering, photonics, biophotonics and applied physics, after they have completed modern optics or a similar subject. It is also a reference for other scientists interested in the field.

MINIATURE LASER SOURCE TECHNOLOGY: Properties of High Power Semiconductor Lasers (D.F. Welch). DiodePumped Miniature Solid State Lasers (R. Pratesi). LIGHTTISUE INTERACTIONS AND OPTICS OF TISSUES: Biophysical Bases of LaserTissue Interactions (J.L. Boulnois). Optical and Thermal Modeling of Tissues: Dosimetry (M.J.C. van Gemert et al.). DIAGNOSTIC TECHNIQUES: Holography in Medical Diagnostics (G. von Bally). Laser Reflectance Spectroscopy of tissue (B. Wilson et al.). Monitoring and Imaging of Tissue Blood Flow by Coherent Light Scattering (G.E. Nilsson et al.). Transillumination Imaging (P.C. Jackson et al.). THERAPEUTIC TECHNIQUES: Lamps: Ultraviolet Radiation Lamps for the Phototherapy of Psoriasis (B.L. Diffey). Phototherapy and Photochemotherapy of Psoriasis (T.B. Fitzpatrick). Light Therapy for Neonatal Jaundice (J.F. Ennever). The Hazards of Cosmetic Tanning with UVA Radiation (A.R. Young). Lasers: The Role of Neodymium Yttrium Aluminum Garnet (Nd: YAG) Laser in Medicine (H. Barr et al.). Diode Laser Photocoagulation in Opthamology (R. Brancato et al.). FUTURE DIRECTIONS: Initial Applications and Potential of Miniature Lasers in Medicine (R. Pratesi). Future Trends in Laser Medicine (J.A. Parrish). 8 additional articles. Index of Contributors. Subject Index.

Key features: Organised and centred around analysis techniques, not traditional Mechanics and E&M. Presents a unified approach, in a different order, meaning that the same laboratories, equipment, and demonstrations can be used when teaching the course. Demonstrates to students that the analysis and concepts they are learning are critical to the understanding of biological systems.

This volume summarizes the state-of-the-art technologies, key advances and future trends in the field of label-free biosensing. It provides detailed insights into the different types of solid-state, label-free biosensors, their underlying transducer principles, advanced materials utilized, device-fabrication techniques and various applications. The book offers graduate students, academic researchers, and industry professionals a comprehensive source of information on all facets of label-free biosensing and the future trends in this flourishing field. Highlights of the subjects covered include label-free biosensing with: * semiconductor field-effect devices such as nanomaterial-modified capacitive electrolyte-insulator-semiconductor structures, silicon nanowire transistors, III-nitride semiconductor devices and light-addressable potentiometric sensors * impedimetric biosensors using planar and 3D electrodes * nanocavity and solid-state nanopore devices * carbon nanotube and graphene/graphene oxide biosensors * electrochemical biosensors using molecularly imprinted polymers * biomimetic sensors based on acoustic signal transduction * enzyme logic systems and digital biosensors based on the biocomputing concept * heat-transfer as a novel transducer principle * ultrasensitive surface plasmon resonance biosensors * magnetic biosensors and magnetic imaging devices

This book provides an introduction to the significant role of physics in evolution, based on the ideas of matter and energy resource flow, organism self-copying, and ecological change. The text employs these ideas to create quantitative models for important evolutionary processes. Many fields of science and engineering have come up against the problem of complex design-when details become so numerous that computer power alone cannot make progress. Nature solved the complex-design problem using evolution, yet how it did so has been a mystery. Both laboratory experiments and computer-simulation attempts eventually stopped evolving. Something more than Darwin's ideas of heredity, variation, and selection was needed. The solution is that there is a fourth element to evolution: ecological change. When a new variation is selected, this can change the ecology, and the new ecology can create new opportunities for even more new variations to be selected. Through this endless cycle, complexity can grow automatically. This book uses the physics of resource flow to describe this process in detail, developing quantitative models for many evolutionary processes, including selection, multicellularity, coevolution, sexual reproduction, and the Serengeti Rules. The text demonstrates that these models are in conceptual agreement with numerous examples of biological phenomena, and reveals, through physics, how complex design can arise naturally. This will serve as a key text on the part physics plays in evolution, and will be of great interest to students at the university level and above studying biophysics, physics, systems biology, and related fields.

This book updates and expands on various aspects of the vasculature's microenvironment and how these regulate differentiation and assembly. Discussed in this new edition are efforts to capitalize on combing engineering techniques, to study and manipulate various biophysical cues, including: endothelial cell- pericyte interactions (Davis), mechanical forces to regulate vascularization in three-dimensional constructs (Levenberg), how matrix properties and oxygen tension regulate vascular fate and assembly (Gerecht), biophysical cues in relation to vascular aging (Ferreira), 3D printing of complex vascularized tissue (Hibino), the harnessing of biophysical cues for therapeutic vasculature interfacing with the damaged brain (Segura) and finally, the infarcted heart (Grayson). This second edition of Biophysical Regulation of Vascular Differentiation and Assembly provides an interdisciplinary view of vasculature regulation thru various biophysical cues and presents recent advances in measuring and controlling such parameters. This book will be of interest to biologists, biophysicists and engineers who work with vascular differentiation and assembly.

This volume describes current fundamental advances in the experimental and theoretical study of molecular dynamics and stochastic dynamic simulations, X-ray crystallography and NMR of biomolecules, the structure of proteins and its prediction, time resolved Fourier transform IR spectroscopy of biomolecules, the computation of free energy, applications of vibrational CD of nucleic acids, and solid state NMR. Further presentations include recent advances in UV resonance Raman spectroscopy of biomolecules, semiempirical MO methods, empirical force fields, quantitative studies of the structure of proteins in water by Fourier transform IR, and density functional theory. Metal-ligand interactions, DFT treatment of organometallic and biological systems, and simulation vs. X-ray and far IR experiments are also discussed in some detail. The text provides a broad perspective of the current theoretical aspects and experimental findings in the field of biomolecular dynamics, revealing future research trends, especially in areas where theoreticians and experimentalists could collaborate.

This book presents a physicists view of life. The primary life functions of animals, such as eating, growing, reproducing and getting around all depend on motion: Motion of materials through the body, motion of limbs and motion of the entire body through water, air and on land. These activities are driven by internal information stored in the genes or in the brain and by external information transmitted by the senses. This book models these life functions with the tools of physics. It will appeal to all scientists, from the undergraduate level upwards, who are interested in the role played by physics in the animal kingdom.

Everything you wanted to know about physics, biology, and the world at large becomes straightforward once you understand the life-organizing principle. Author E.M. Elsheikh, a mathematician and longtime professor, examines what the principle tells us about nature and life in this academic work. He proves that the secrets of our world reside in the quantum information contained in our DNA and genome.Discover the inner workings of life, and develop a better understanding of a maximum-action principle that explains self-organization, self-replication, and self-evolution. He also explores such topics as laws that describe phylogenetic evolution and ontogenetic development; little-known facts about genetics and evolution, including why Darwinian theory facilitates a more dynamic conception of human nature; extensions of quantum theory; and new foundations of knowledge.By challenging the notions of mainstream biology and physics and questioning assumptions about life being a physical rather than a supernatural phenomenon, you'll stumble upon truths that few others know. Get ready to go on a fascinating journey that challenges paradigms and leads you to the Discovery of the Life-Organizing Principle.

The biophysics of excitable membranes and extracellular potential fields emerged at the end of the 18th century, together with electrophysiology, and has been used ever since as a basis for the development of electrophysiological investigations. This holds true even for the contemporary stage of initial discoveries concerning the molecular mechanisms of membrane excitability. The biophysics of ionic channels has gradually revealed the genesis of the ionic currents and of the biopotentials in different excitable structures. On the basis of electrodynamics, the extracellular potential fields in the living body, considered as a volume conductor, have been studied intensively. The knowledge accumulated constitutes the theoretical basis for interpretation of the electrophysiological data. Over a period of more than 15 years a group of Bulgarian investigators led by A. Gydikov has systematically studied the dependence between the intra- and extracellular potentials of the skeletal muscles. The present book summarizes these investigations. Using a great amount of factual material from experiments and model investigations on the skeletal muscle potentials, the author considers: (a) the extracellular potential field of single skeletal muscle fibres and their dependence of the parameters of intracellular action potentials, the geometric parameters of the fibres and of the volume conductor; (b) the potentials of single motor units; (c) the compound and reflex muscle potentials, and (d) the interference electromyogram. The comprehensive consideration of the biophysics of skeletal muscle potentials is of interest to a broad circle of specialists. The book summarizes contemporary knowledge in thisfield and presents a consistent theoretical basis of electromyography which is of great importance not only for the neurological clinic, but also for different fields of applied physiology.