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Books > Science & Mathematics > Physics > Applied physics & special topics > Biophysics
Soft Condensed Matter commonly deals with materials that are mechanically soft and, more importantly, particularly prone to thermal fluctuation effects. Charged soft matter systems are especially interesting: they can be manufactured artificially as polyelectrolytes to serve as superabsorbers in dypers, as flocculation and retention agents, as thickeners and gelling agents, and as oil-recovery process aids. They are also abundant in living organisms, mostly performing important structural (e.g. membranes) and functional (e.g. DNA) tasks. The book describes the many areas in soft matter and biophysics where electrostatic interactions play an important role. It offers in-depth coverage of recent theoretical approaches, advances in computer simulation, and novel experimental techniques. Readership: Advanced undergraduate level in physics, physical chemistry, and theoretical biochemistry.
As a new and exciting field of interdisciplinary macromolecular
science and engineering, polymeric materials will have a profound
presence in 21st century chemical, pharmaceutical, biomedical,
manufacturing, infrastructure, electronic, optical and information
technologies. The origin of this field derived from an area of
polymer science and engineering encompassing plastic technologies.
The field is rapidly expanding to incorporate new interdisciplinary
research areas such as biomaterials, macromolecular biology, novel
macromolecular structures, environmental macromolecular science and
engineering, innovative and nano-fabrications of products, and is
translating discoveries into technologies.
Muscle contraction has been the focus of scientific investigation for more than two centuries, and major discoveries have changed the field over the years. Early in the twentieth century, Fenn (1924, 1923) showed that the total energy liberated during a contraction (heat + work) was increased when the muscle was allowed to shorten and perform work. The result implied that chemical reactions during contractions were load-dependent. The observation underlying the "Fenn effect" was taken to a greater extent when Hill (1938) published a pivotal study showing in details the relation between heat production and the amount of muscle shortening, providing investigators with the force-velocity relation for skeletal muscles. Subsequently, two papers paved the way for the current paradigm in the field of muscle contraction. Huxley and Niedergerke (1954), and Huxley and Hanson (1954) showed that the width of the A-bands did not change during muscle stretch or activation. Contraction, previously believed to be caused by shortening of muscle filaments, was associated with sliding of the thick and thin filaments. These studies were followed by the classic paper by Huxley (1957), in which he conceptualized for the first time the cross-bridge theory; filament sliding was driven by the cyclical interactions of myosin heads (cross-bridges) with actin. The original cross-bridge theory has been revised over the years but the basic features have remained mostly intact. It now influences studies performed with molecular motors responsible for tasks as diverse as muscle contraction, cell division and vesicle transport.
Francis BACON, in his Novum Organum, Robert BOYLE, in his Skeptical Chemist and Rene DESCARTES, in his Discourse on Method; all of these men were witnesses to the th scientific revolution, which, in the 17 century, began to awaken the western world from a long sleep. In each of these works, the author emphasizes the role of the experimental method in exploring the laws of Nature, that is to say, the way in which an experiment is designed, implemented according to tried and tested te- niques, and used as a basis for drawing conclusions that are based only on results, with their margins of error, taking into account contemporary traditions and prejudices. Two centuries later, Claude BERNARD, in his Introduction to the Study of Experimental Medicine, made a passionate plea for the application of the experimental method when studying the functions of living beings. Twenty-first century Biology, which has been fertilized by highly sophisticated techniques inherited from Physics and Chemistry, blessed with a constantly increasing expertise in the manipulation of the genome, initiated into the mysteries of information techn- ogy, and enriched with the ever-growing fund of basic knowledge, at times appears to have forgotten its roots."
Herbicide resistance has become an important constraint on modern agricultural practices. An alarming increase in weed biotypes that are resistant to herbicides has also been reported. Opportunity exists for a novel weed management technology, which is also compatible with no-till agricultural practices. Microwave heating can kill both emerged weed plants and weed seeds in the soil. When the intensity of the microwave fields is moderate, plants, which have already emerged, are susceptible to microwave treatment. If the microwave field is intense enough, very rapid volumetric heating and some thermal runaway in the plant structures cause micro-steam explosions in the plant cells, which rupture the plant structures, leading to death. Soil treatment requires significantly more energy; however, there are secondary benefits for crops growing in microwave treated soil. These include: significant reduction of the dormant weed seed bank; significant reduction of nematode populations; significant reduction of fungal populations; better availability of indigenous nitrogen for the plants; more rapid humification; and significant increases in crop growth and yield. Microwave weed management and soil treatment is not restricted by weather conditions; therefore, the technology may offer some timeliness and environmental benefits, which are yet to be quantified in a cropping system.
This book covers the subject of Biological Effects of EMF in its entirety. First it covers both high and low frequency effects, explains thoroughly the mechanisms of interaction between EMF and biological systems and provides the necessary mathematical modeling for EMF absorption. Experimental verification of the theoretical results is given when at all possible and it is expected to open new areas of research as well as provide the material for university course creation. Topics as Ion Cyclotron Resonance in biological systems, thermal and dissipation effects of mobile system radiation, effects of transmission lines and railway radiation, effects on the reproductive capacity of specific insects, on the immune systems on embryos and fetuses, blood parameters and behavior of rats, as well as health risk assessment and the therapeutic effects of EMF are thoroughly covered.
Biological systems are regulated by the thermodynamic parameters of pressure and temperature. With the help of new spectroscopic methods it is now possible to study the structure and function of such systems under extreme pressures and temperatures. This book described the resulting theory and applications of these pressure and temperature effects. The subjects covered include the use of high pressure in food processing and even the theory of the origin and evolution of life. Readers exploring the world of biology in extreme environments will find this book particularly useful.
This thesis presents a novel single-molecule spectroscopy method that, for the first time, allows the dipole orientations and fluorescence lifetimes of individual molecules to be measured simultaneously. These two parameters are needed to determine the position of individual molecules with nanometer accuracy near a metallic structure. Proof-of-principle experiments demonstrating the value of this new single-molecule localization concept are also presented. Lastly, the book highlights potential applications of the method in biophysics, molecular physics, soft matter and structural biology.
At the end of the 20th century, a tremendous progress was made in biotechnology in its widest sense. This progress was largely possible as a result of joint efforts of top academic researchers in both pure fundamental sciences and applied research. The surplus value of such interdisciplinary approaches was clearly highlighted during the 9th European Congress on Biotechnology that was held in Brussels, Belgium (11-15 July, 1999). The present volume in the 'Focus on Biotechnology' series, entiteld 'Physics and Chemistry Basis for Biotechnology' contains selected presentations from this meeting, A collection of experts has made serious efforts to present some of the latest developments in various scientific fields and to unveil prospective evolutions on the threshold of the new millenium. In all contributions the emphasis is on emerging new areas of research in which physicochemical principles form the foundation. In reading the different chapters, it appears that more than ever significant advances in biotechnology very often depend on breakthroughs in the biotechnology itself (e.g.
This volume describes and discusses recent advances in angiogenesis research. The chapters are organized to address all biological length scales of angiogenesis: molecular, cellular and tissue in both in vivo and in vitro settings. Specific emphasis is given to novel methodologies and biomaterials that have been developed and applied to angiogenesis research. Angiogenesis experts from diverse fields including engineering, cell and developmental biology, chemistry and physics will be invited to contribute chapters which focus on the mechanical and chemical signals which affect and promote angiogenesis.
Ring polymers are one of the last big mysteries in polymer physics, and this thesis tackles the problem of describing their behaviour when interacting in dense solutions and with complex environments and reports key findings that help shed light on these complex issues. The systems investigated are not restricted to artificial polymer systems, but also cover biologically inspired ensembles, contributing to the broad applicability and interest of the conclusions reached. One of the most remarkable findings is the unambiguous evidence that rings inter-penetrate when in dense solutions; here this behaviour is shown to lead to the emergence of a glassy state solely driven by the topology of the constituents. This novel glassy state is unconventional in its nature and, thanks to its universal properties inherited from polymer physics, will attract the attention of a wide range of physicists in the years to come.
Ion channels are membrane proteins that act as gated pathways for
the movement of ions across cell membranes. They play essential
roles in the physiology of all cells. In recent years, an
ever-increasing number of human and animal diseases have been found
to result from defects in ion channel function. Most of these
diseases arise from mutations in the genes encoding ion channel
proteins, and they are now referred to as the
channelopathies.
This volume, written by experts in the field, discusses the current understanding of the biophysical principles that govern RNA folding, with featured RNAs including the ribosomal RNAs, viral RNAs, and self-splicing introns. In addition to the fundamental features of RNA folding, the central experimental and computational approaches in the field are presented with an emphasis on their individual strengths and limitations, and how they can be combined to be more powerful than any method alone; these approaches include NMR, single molecule fluorescence, site-directed spin labeling, structure mapping, comparative sequence analysis, graph theory, course - grained 3D modeling, and more. This volume will be of interest to professional researchers and advanced students entering the field of RNA folding.
In this thesis, the author investigates the biophysical basis of the local field potential (LFP) as a way of gaining a better understanding of its underlying physiological mechanisms. The results represent major advances in our understanding and interpretation of LFPs and brain oscillations. They highlight the importance of using suitable experimental and analytical methods to explore the activity of brain circuits and point to the LFP as a useful, but complex variable for this purpose.
Sodium reabsorbing epithelia play a major role in whole-body sodium
homeostasis. Some examples of sodium regulating tissues include
kidney, colon, lung, and sweat ducts. Sodium transport across these
membranes is a two-step process: entry through an
amiloride-sensitive sodium channel and exit via the
ouabain-sensitive sodium/potassium ATPase. The sodium entry
channels are the rate-limiting determinant for transport and are
regulated by several different hormones. The sodium channels also
play a significant role in a number of disease states, like
hypertension, edema, drug-induced hyperkalemia, and cystic
fibrosis. Amiloride-Sensitive Sodium Channels: Physiology and
Functional Diversity provides the first in-depth exchange of ideas
concerning these sodium channels, their regulation and involvement
in normal and pathophysiological situations.
This book presents new mathematics for the description of structure
and dynamics in molecular and cellular biology. On an exponential
scale it is possible to combine functions describing inner
organisation, including finite periodicity, with functions for
outside morphology into a complete definition of structure. This
mathematics is particularly fruitful to apply at molecular and
atomic distances. The structure descriptions can then be related to
atomic and molecular forces and provide information on structural
mechanisms. The calculations have been focussed on lipid membranes
forming the surface layers of cell organelles. Calculated surfaces
represent the mid-surface of the lipid bilayer. Membrane dynamics
such as vesicle transport are described in this new language.
Periodic membrane assemblies exhibit conformations based on the
standing wave oscillations of the bilayer, considered to reflect
the true dynamic nature of periodic membrane structures. As an
illustration the structure of an endoplasmatic reticulum has been
calculated. The transformation of such cell membrane assemblies
into cubosomes seems to reflect a transition into vegetative
states. The organisation of the lipid bilayer of nerve cells is
analyzed, taking into account an earlier observed lipid bilayer
phase transition associated with the depolarisation of the
membrane. Evidence is given for a new structure of the alveolar
surface, relating the mathematical surface defining the bilayer
organisation to new experimental data. The surface layer is
proposed to consist of a coherent phase, consisting of a
lipid-protein bilayer curved according to a classical surface - the
CLP surface. Without employing this new mathematics it would not be
possible to give an analytical description of this structure and
its deformation during the respiration cycle. In more general terms
this mathematics is applied to the description of the structure and
dynamic properties of motor proteins, cytoskeleton proteins, and
RNA/DNA. On a macroscopic scale the motions of cilia, sperm and
flagella are modelled.
This book delves into the recent developments in the microscale and microfluidic technologies that allow manipulation at the single and cell aggregate level. Expert authors review the dominant mechanisms that manipulate and sort biological structures, making this a state-of-the-art overview of conventional cell sorting techniques, the principles of microfluidics, and of microfluidic devices. All chapters highlight the benefits and drawbacks of each technique they discuss, which include magnetic, electrical, optical, acoustic, gravity/sedimentation, inertial, deformability, and aqueous two-phase systems as the dominant mechanisms utilized by microfluidic devices to handle biological samples. Each chapter explains the physics of the mechanism at work, and reviews common geometries and devices to help readers decide the type of style of device required for various applications. This book is appropriate for graduate-level biomedical engineering and analytical chemistry students, as well as engineers and scientists working in the biotechnology industry.
The critically acclaimed laboratory standard for more than forty
years, Methods in Enzymology is one of the most highly respected
publications in the field of biochemistry. Since 1955, each volume
has been eagerly awaited, frequently consulted, and praised by
researchers and reviewers alike. More than 285 volumes have been
published (all of them still in print) and much of the material is
relevant even today-truly an essential publication for
researchersin all fields of life sciences.
Scope and ideas of the workshop The workshop which took place at the University of Giessen from Oct. 3 to Oct. 7, 2002 and whose proceedings are collected in this volume started from the idea to convene a number of scientists with the aim to outline their "visions" for the future of radiation research on the basis of their expertise. As radiation research is a very wide field restrictions were unavoidable. It was decided to concentrate this time mainly on molecular and cellular biology because it was felt that here action is par-ticularly needed. This did not exclude contributions from neighbouring fields as may be seen from the table of contents. It was clearly not planned to have a c- prehensive account of the present scientif fic achievements but the results presented should only serve as a starting point for the discussion of future lines of research, with the emphasis on the "outreach" to other parts of life sciences. If you are interested in the future ask the young - we attempted, therefore, to invite mainly younger colleagues (with a few exceptions) who had, however, already left their marks in the field. They were asked to describe what they felt is important in radiation research and may have significant influences on other branches of life sciences. They were given the task to demonstrate what is lost for science "if we do no longer exist".
The first section of this volume corresponds to courses on the
cytoskeleton, its various structures and its dynamics, especially
during the cell cycle. The reductionist approach is favoured in
this field and considerable effort is spent on finding out how
these structures are built up from their component molecules, how
they grow or decrease in size, how they interact with each other
and with other cell components. The second section describes the
endo membrane system of a eukaryotic cell and the regulated protein
traffic that flows through it. Part III deals with the onset of
higher levels of organization. Topics covered include the
development of the central nervous system, the role of time in
biology and theoretical models to describe biochemical and cellular
oscillations. The volume concludes with a reflection on physics and
biology and the author shares some of his thoughts on the different
ways in which physicists and biologists tackle problems in their
respective fields.
This is the third volume in the series, in which the topic of the effects of radio frequencies on human tissue, now increasingly a concern with the prevalence of cell phones, is explored by Prof. Lin and other researchers. The impact of electromagnetics on imaging and cardiology, both very keen areas of research at present, is also explored.
The application to Biology of the methodologies developed in Physics is attracting an increasing interest from the scientific community. It has led to the emergence of a new interdisciplinary field, called Physical Biology, with the aim of reaching a better understanding of the biological mechanisms at molecular and cellular levels. Statistical Mechanics in particular plays an important role in the development of this new field. For this reason, the XXth session of the famous Sitges Conference on Statistical Physics was dedicated to "Physical Biology: from Molecular Interactions to Cellular Behavior." As is by now tradition, a number of lectures were subsequently selected, expanded and updated for publication as lecture notes, so as to provide both a state-of-the-art introduction and overview to a number of subjects of broader interest and to favor the interchange and cross-fertilization of ideas between biologists and physicists. The present volume focuses on three main subtopics (biological water, protein solutions as well as transport and replication), presenting for each of them the on-going debates on recent results. The role of water in biological processes, the mechanisms of protein folding, the phases and cooperative effects in biological solutions, the thermodynamic description of replication, transport and neural activity, all are subjects that are revised in this volume, based on new experiments and new theoretical interpretations.
Bringing together nanoscience with stem cell and bacterial cell biology, this thesis is truly interdisciplinary in scope. It shows that the creation of superparamagnetic nanoparticles inside a protein coat, followed by chemical functionalisation of the protein surface, provides a novel methodology for cell magnetisation using incubation times as short as one minute. Crucially, stem cell proliferation and multi-lineage differentiation capacity is not impaired after labelling. Due to the unspecific labelling mechanism, this thesis also shows that the same magnetic protein nanoparticles can be used for rapid bacterial magnetisation. Thus, it is possible to magnetically capture and concentrate pathogens from clinical samples quickly and highly efficiently.
This informative publication brings together knowledge of various
aspects of cellular regulation. Current Topics in Cellular
Regulation reviews the progress being made in those specialized
areas of study that have undergone substantial development. It also
publishes provocative new theories and concepts and serves as a
forum for the discussion of general principles. Researchers in
cellular regulation as well as biochemists, molecular and cell
biologists, microbiologists, and biophysicists will find Current
Topics in Cellular Regulation a useful source of up-to-date
information.
Birds and reptiles have long fascinated investigators studying hearing and the auditory system. The highly evolved auditory inner ear of birds and reptiles shares many characteristics with the ear of mammals. Thus, the two groups are essential in understanding the form and function of the vertebrate and mammalian auditory systems. Comparative Hearing: Birds and Reptiles covers the broad range of our knowledge of hearing and acoustic communication in both groups of vertebrates. This volume addresses the many similarities in their auditory systems, as well as the known significant differences about hearing in the two groups. |
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