This new edition captures the advances made in the field of evolutionary systems biology since the publication of the first edition. The first edition focused on laying the foundations of evolutionary systems biology as an interdisciplinary field, where a way of thinking and asking questions is combined with a wide variety of tools, both experimental and theoretical/computational. Since publication of the first edition, evolutionary systems biology is now a well-known term describing this growing field. The new edition provides an overview of the current status and future developments of this interdisciplinary field. Chapters highlight several key achievements from the last decade and outline exciting new developments, including an understanding of the interplay between complexity and predictability in evolutionary systems, new viewpoints and methods to study organisms in evolving populations at the level of the genome, gene regulatory network, and metabolic network, and better analysis and modeling techniques that will open new avenues of scientific inquiry.

This book proposes a new angle on the controversy over evolution as a biological theory, creation as a theological/worldview doctrine and evolutionism, creationism and Intelligent Design theory as social ideologies. Rather than presenting a polemic that will enrage or delight one camp or another, this book proposes that a cease-fire is possible.

Evolution helps us understand our own humble place in the rich tapestry of life. But what do we know about the theory of evolution itself? Based on the popular podcast of the same name, Evolution Talk reveals how the theory of evolution came to be and how it explains the world around us. Before Charles Darwin, other luminaries planted the seeds that would one day evolve into the theory that would make him famous. Author Rick Coste begins by shining a spotlight on the writers, philosophers, and scientists who planted the seeds that would blossom into the theory of evolution by natural selection, from Aristotle's big ideas to young Mary Anning's discovery of the first ichthyosaur skeleton. After exploring the contributions of Charles Darwin and Alfred Russel Wallace, Evolution Talk investigates the very beginnings of life itself. From its genesis in a primordial pond to the endless and beautiful forms which emerged to populate our once barren little planet, adaptations such as altruism, sexual selection, and brains further pushed life along its amazing path to today. Finally, Coste concludes by taking a step back to ask questions about how we as humans fit in, such as "Are we unique?" and "Are we still evolving?" Breaking down complex concepts with easy-to-follow language and engaging examples, Evolution Talk will educate and entertain any reader looking to learn more about the greatest idea ever.

Does evolution inform the ancient debate regarding the roles that reason and instinct play in how we decide what to do? Evolution and Ethics offers an insightful analysis of four epistemological types of sociobiology which appear in the extant literature, and includes a preliminary analysis of Darwinism itself.

Phylogenetic reconstruction--the method by which biologists examine the relationship between living and extinct organisms in an effort to identify evolutionary pathways--has seen radical changes in the last ten years. But as rapid advances in mathematical, molecular, developmental, and cladistic techniques have greatly improved reconstruction efforts, they have also sparked controversy, especially with regard to the assumptions and data underlying the cladistic method. This book brings together contributions from a wide range of practitioners in order to find common ground. By examining numerous models from a variety of fields, the book serves as a guide to the latest methods of classification and phylogeny reconstruction and provides insights into the relative merits that each approach has to offer. In particular, developmental studies emerge as a significant factor in cladogram construction. Splendidly written and wide-ranging in scope, Models in Phylogeny Reconstruction will be welcomed by students and researchers in systematic and evolutionary biology.

"The Nature of Classification" discusses an old and generally ignored issue in the philosophy of science: natural classification. It argues for classification to be a sometimes theory-free activity in science, and discusses the existence of scientific domains, theory-dependence of observation, the inferential relations of classification and theory, and the nature of the classificatory activity in general. It focuses on biological classification, but extends the discussion to physics, psychiatry, meteorology and other special sciences.

This book explores fascinating topics at the edge of life, guiding the reader all the way from the relation of life processes to the second law of thermodynamics and the abundance of complex organic compounds in the universe through to the latest advances in synthetic biology and metabolic engineering. The background to the book is the extraordinary scientific adventures that are being undertaken as progress is made toward the creation of an artificial cell and the control of life processes. This journey involves input from research areas as diverse as genetic engineering, physical chemistry, and information theory. Life is to be thought of not only as a chemical event but also as an information process, with the genome a repository of information gathered over time through evolution. Knowledge of the mechanisms affecting the increase in complexity associated with evolutionary paths is improving, and there appear to be analogies with the evolution of the technologies promoting the development of our society. The book will be of wide interest to students at all levels and to others with an interest in the subject.

This root-and-branch re-evaluation of Darwin's concept of sexual selection tackles the subject from historical, epistemological and theoretical perspectives. Contributions from a wealth of disciplines have been marshaled for this volume, with key figures in behavioural ecology, philosophy, and the history of science adding to its wide-ranging relevance. Updating the reader on the debate currently live in behavioural ecology itself on the centrality of sexual selection, and with coverage of developments in the field of animal aesthetics, the book details the current state of play, while other chapters trace the history of sexual selection from Darwin to today and inquire into the neurobiological bases for partner choices and the comparisons between the hedonic brain in human and non-human animals. Welcome space is given to the social aspects of sexual selection, particularly where Darwin drew distinctions between eager males and coy females and rationalized this as evolutionary strategy. Also explored are the current definition of sexual selection (as opposed to natural selection) and its importance in today's biological research, and the impending critique of the theory from the nascent field of animal aesthetics. As a comprehensive assessment of the current health, or otherwise, of Darwin's theory, 140 years after the publication of his Descent of Man, the book offers a uniquely rounded view that asks whether 'sexual selection' is in itself a progressive or reactionary notion, even as it explores its theoretical relevance in the technical biological study of the twenty-first century.

This volume describes features of autonomy and integrates them into the recent discussion of factors in evolution. In recent years ideas about major transitions in evolution are undergoing a revolutionary change. They include questions about the origin of evolutionary innovation, their genetic and epigenetic background, the role of the phenotype and of changes in ontogenetic pathways. In the present book, it is argued that it is likewise necessary to question the properties of these innovations and what was qualitatively generated during the macroevolutionary transitions.

The author states that a recurring central aspect of macroevolutionary innovations is an increase in individual organismal autonomy whereby it is emancipated from the environment with changes in its capacity for flexibility, self-regulation and self-control of behavior.

The first chapters define the concept of autonomy and examine its history and its epistemological context. Later chapters demonstrate how changes in autonomy took place during the major evolutionary transitions and investigate the generation of organs and physiological systems. They synthesize material from various disciplines including zoology, comparative physiology, morphology, molecular biology, neurobiology and ethology. It is argued that the concept is also relevant for understanding the relation of the biological evolution of man to his cultural abilities.

Finally the relation of autonomy to adaptation, niche construction, phenotypic plasticity and other factors and patterns in evolution is discussed. The text has a clear perspective from the context of systems biology, arguing that the generation of biological autonomy must be interpreted within an integrative systems approach.

This book examines why humans have big brains, what big brains enable us to do, and how specialized brains are associated with eusociality in animals. It explores why brains expanded so slowly, and then why they stopped growing. This book whittles down the theories on brain size evolution to a few that represent testable hypotheses to identify logical and practical explanations for the phenomenon. At the core of this book is data derived from original, previously unpublished research on brain size in a number of social mammals. This data supports the idea that evolution of the brain in humans is the result of social interaction. This book also traces the products of the social brain: ideology, religion, urban life, housing, and learning and adapting to dense complex social interactions. It uniquely compares brain evolution in social animals across the animal kingdom, and examines the nature of the human brain and its evolution within the social and historical context of complex human social structures.

Life is often a matter of gambles, pay-offs, and trade-offs, just like a game. This book takes readers on a tour through the games and computer simulations that are actually helping to advance knowledge in such fields as ecology, evolution, and animal behavior. Although the book deals with questions of vital importance, like sex and survival, it does so in the lively, entertaining spirit of game-playing. It starts with artificial life and self-replicating automata, a topic ideally suited for a computer-games approach. The book goes on to study pursuit games between predators and prey, and chaotic motion and its role in ecology. Games of chance and statistical paradoxes illuminate the randomness in molecular evolution, while some bizarre double games played by chromosomes help explain the laws of population genetics. Other topics include courtship, ownership, partnership, and brinksmanship--illustrated through the game of poker and computer tournaments. No other book explains so well why scientific observations and insights can be structured as the rules of a survival game, and what happens when they are assembled on a computer or in the mind and allowed to run their course. General readers as well as professionals and students in ecological, evolutionary, and behavioral studies will find this a fascinating and informative work.

Cognitive Evolution provides an in-depth exploration of the natural history of cognition, from the beginning of life on Earth to present-day humans. Drawing together evolutionary, comparative, and neuroscience research, the book brings a unique cognitive perspective to evolutionary psychology. The second edition features the latest research and illustrations on emerging topics, making it a true update of the field. After introducing evolution, Boles adopts an information processing perspective - from inputs to outputs, with all the mental processes in between to provide a systematic overview of the evolution of cognition, including its sensory, motoric, perceptual, and cognitive components. The combination of evolutionary, comparative, and neuroscience perspectives provides an insight on topics like vision, handedness, tools and planning, spatial perception, pattern recognition, memory, language, and consciousness. Cognitive Evolution is a comprehensive, essential read for advanced undergraduate and postgraduate students of cognitive and evolutionary psychology. Researchers will find it a useful and insightful synthesis of the field, yet even the curious public will find in it much that is surprising and enlightening.

Evolution, Explanation, Ethics and Aesthetics: Towards a Philosophy of Biology focuses on the dominant biological topic of evolution. It deals with the prevailing philosophical themes of how to explain the adaptation of organisms, the interplay of chance and necessity, and the recurrent topics of emergence, reductionism, and progress. In addition, the extensively treated topic of how to explain human nature as a result of natural processes and the encompassed issues of the foundations of morality and the brain-to-mind transformation is discussed. The philosophy of biology is a rapidly expanding field, not more than half a century old at most, and to a large extent is replacing the interest in the philosophy of physics that prevailed in the first two-thirds of the twentieth century. Few texts available have the benefit of being written by an eminent biologist who happens to be also a philosopher, as in this work. This book is a useful resource for seminar courses and college courses on the philosophy of biology. Researchers, academics, and students in evolutionary biology, behavior, genetics, and biodiversity will also be interested in this work, as will those in human biology and issues such as ethics, religion, and the human mind, along with professional philosophers of science and those concerned with such issues as whether evolution is compatible with religion and/or where morality comes from.

In 1859 Darwin described a deceptively simple mechanism that he called "natural selection," a combination of variation, inheritance, and reproductive success. He argued that this mechanism was the key to explaining the most puzzling features of the natural world, and science and philosophy were changed forever as a result. The exact nature of the Darwinian process has been controversial ever since, however. Godfrey-Smith draws on new developments in biology, philosophy of science, and other fields to give a new analysis and extension of Darwin's idea. The central concept used is that of a "Darwinian population," a collection of things with the capacity to undergo change by natural selection. From this starting point, new analyses of the role of genes in evolution, the application of Darwinian ideas to cultural change, and "evolutionary transitions" that produce complex organisms and societies are developed. Darwinian Populations and Natural Selection will be essential reading for anyone interested in evolutionary theory.

Development is a complex and highly dynamic process involving the cross talk among genes, maternal effects and environmental circumstances. Widespread evidence from plant to animal species show that variation in developmental conditions can modulate life history trajectories and influence key traits, such as growth, reproduction, and senescence. These effects are not limited to a single generation but can also be passed on future generations. This book aims to bring together studies of early life effects from the fields of evolutionary biology, global change biology, and biomedicine to synthesise and improve current knowledge of the mechanisms involved, and how variation in early life conditions translates into Darwinian fitness outcomes. Relying on examples of organisms' responses to the ongoing and future environmental challenges of the Anthropocene, this book takes a novel approach to address the adaptive meaning of early life effects. The book has a broad scientific approach, targeting eco-evolutionary biologists, behavioural biologists, eco-physiologists, eco-toxicologists, as well as epidemiologists and biomedical scientists.

Muscle tissue powers every heartbeat, blink, jog, jump and goosebump. It is the force behind the most critical bodily functions, including digestion and childbirth, as well as extreme feats of athleticism. We can mould our muscles with exercise and observe the results. In this lively, lucid book, orthopedic surgeon Roy A. Meals takes us on a wide-ranging journey through anatomy, biology, history and health to unlock the mysteries of our muscles. He breaks down the three different types of muscle—smooth, skeletal and cardiac—and explores major advancements in medicine and fitness, including cutting-edge gene-editing research and the science behind popular muscle conditioning strategies. Along the way, he offers insight into the changing aesthetic and cultural conception of muscle, from Michelangelo’s David to present-day bodybuilders, and shares fascinating examples of strange muscular maladies and their treatment. Brimming with fun facts and infectious enthusiasm, Muscle sheds light on the astonishing, essential tissue that moves us through life.

This is a tale of human obsession, one intrepid tuna, the dedicated fisherman who caught and set her free, the promises and limits of ocean science and the big truth of how our insatiable appetite for bluefin transformed a cottage industry into a global dilemma. In 2004, an enigmatic charter captain named Al Anderson caught and marked one Atlantic bluefin tuna off New England’s coast with a plastic fish tag. Fourteen years later that fish – dubbed Amelia for her ocean-spanning journeys – died in a Mediterranean fish trap, sparking Karen Pinchin’s riveting investigation into the marvels, struggles, and prehistoric legacy of this remarkable species. Over his fishing career Al marked more than sixty thousand fish with plastic tags, an obsession that made him nearly as many enemies as it did friends. His quest landed him in the crossfire of an ongoing fight between a booming bluefin tuna industry and desperate conservation efforts, a conflict that is once again heating up as overfishing and climate change threaten the fish’s fate. Kings of Their Own Ocean is an urgent investigation that combines science, business, crime, and environmental justice. As Pinchin writes, ‘as a global community, we are collectively only ever a few terrible choices away from wiping out any ocean species.’ Through her exclusive access and interdisciplinary, mesmerizing lens, readers will join her on boats and docks as she visits tuna hot spots and scientists from Portugal to Japan, New Jersey to Nova Scotia, and glimpse, as the author does, rays of dazzling hope for the future of our oceans.

This book traces the evolutionary trajectory of language and teaching from the earliest periods of human evolution to the present day. The author argues that teaching is unique to humans and our ancestors, and that the evolution of teaching, language, and culture are the inextricably linked results of gene-culture coevolutionary processes. Drawing on related fields including archaeology, palaeontology, cultural anthropology, evolutionary psychology and linguistics, he makes the case that the need for joint attention and shared goals in complex adaptive strategies is the underlying driver for the evolution of language-like communication. This book will be of interest to students and scholars of these disciplines, as well as lay readers with an interest in human origins.

Far from being an abnormal or infrequent activity, cannibalism is a naturally occurring behavior with far-reaching implications for the ecology, life history, and evolution of many species. This book offers the first detailed review of the subject, covering the contextual and taxonomic diversity of cannibalism, and explaining its costs, benefits and taxonomic consequences for a broad distribution of species from lower eukaryotes to higher primates. The authors explore the different varieties of cannibalism, including infanticide, mating and courtship rituals, gerontophagy, oophagy, and competitive interactions. They also assess the ecological and evolutionary causes and effects of cannibalistic behavior, using the theoretical tools successfully applied to the study of foraging behavior, sociality, demography, and genetics. These findings will interest a broad audience of ecologists, evolutionary biologists, and students of animal behavior.

Evolution is the single unifying principle of biology and core to everything in the life sciences. More than a century of work by scientists from across the biological spectrum has produced a detailed history of life across the phyla and explained the mechanisms by which new species form. This textbook covers both this history and the mechanisms of speciation; it also aims to provide students with the background needed to read the research literature on evolution. Students will therefore learn about cladistics, molecular phylogenies, the molecular-genetical basis of evolutionary change including the important role of protein networks, symbionts and holobionts, together with the core principles of developmental biology. The book also includes introductory appendices that provide background knowledge on, for example, the diversity of life today, fossils, the geology of Earth and the history of evolutionary thought. Key Features Summarizes the origins of life and the evolution of the eukaryotic cell and of Urbilateria, the last common ancestor of invertebrates and vertebrates. Reviews the history of life across the phyla based on the fossil record and computational phylogenetics. Explains evo-devo and the generation of anatomical novelties. Illustrates the roles of small populations, genetic drift, mutation and selection in speciation. Documents human evolution using the fossil record and evidence of dispersal across the world leading to the emergence of modern humans.

Through the original writings and photography of renowned geologist Harold Rollin Wanless, this book paints a thorough and engaging picture of the White River Badlands' landscape, geology, biology, pioneer settlers, and how life was lived 100 years ago in a harsh, challenging, remote setting. In the summer of 1920, Harold Rollin Wanless, fresh from an undergraduate geology degree at Princeton, spent the first of three summers in the Badlands of South Dakota camping, hiking, and collecting fossil vertebrate skulls. Harold produced a fascinating and thorough diary and report, illustrated with over 100 image plates, in which he explains the geology, biology, and climate of this famous area. Wanless became deeply involved with and vividly records the life, hopes, trials and character of the new homesteading pioneers of the area, and the people and livelihoods he encountered are reflected in the diary as well. This is an engaging look at the history, environment, people and geological character of a unique portion of the American West. Combining a first-hand look at the White River Badlands and its people a century ago with the fossil history contained in its Cenozoic sediments gives a well-rounded historical presentation. This diary was found, compiled, and edited by Drs. Harold Rogers Wanless (the diarist's son and an accomplished geologist himself) and Emmett Evanoff. In the introductory and concluding chapters of this book, they provide a broader perspective of Harold Rollin Wanless's life and his significant achievements beyond the Badlands venture described here. In addition, this narrative - written "only" a century ago - provides a stark contrast with how we travel, communicate, conduct research and survive today, yet shows that human curiosity and kindnesses have not changed.

This book presents current research on all types of ant-plant interactions, and concentrates on understanding these often complex relationships in evolutionary and ecological terms. The range of interactions varies from herbivory (leaf-cutter ants) to complex symbiosis. Many ants prey on plant pests, thus protecting the plant from harm, receiving in exchange nectar and/or nest sites. In some cases the ants tend and protect other insects such as butterfly larvae or Homopterans (which include the aphids and cicadas) which may benefit the ants at the expense of both the host plant and the other insects. Some ants are known to be seed dispersers, and in at least one plant (cocoa) they appear to affect rates of pollination. A significant proportion of these interactions exhibit a high degree of mutualism, making this book part of a growing literature on the ecological determinants of mutualistic behaviour. The thirty-seven chapters by more than fifty contributors range in geographical coverage from northern and southern temperate zones, to the New World tropics, to Australia and south-east Asia. The emphasis throughout, even in the more descriptive chapters, is on possible explanations for observed phenomena. Workers in ecology, evolution, and behaviour will welcome this compendium of information on a subject that has become a modern testing-ground for evolutionary ecology.

Life is a diverse and ubiquitous phenomenon on Earth, characterized by fundamental features distinguishing living bodies from nonliving material. Yet it is also so complex that it has long defied precise definition. This book from a seasoned biologist offers new insights into the nature of life by illuminating a fascinating architecture of dualities inherent in its existence and propagation. Life is connected with individual living beings, yet it is also a collective and inherently global phenomenon of the material world. It embodies a dual existence of cycles of phenotypic life, and their unseen driver - an uninterrupted march of genetic information whose collective immortality is guaranteed by individual mortality. Although evolution propagates and tunes species of organisms, the beings produced can be regarded merely as tools for the survival and cloning of genomes written in an unchanging code. What are the physical versus informational bases and driving forces of life, and how do they unite as an integrated system? What does time mean for individuals, life on the global scale, and the underlying information? This accessible examination of principles and evidence shows that a network of dualities lies at the heart of biological puzzles that have engaged the human mind for millennia.

Those opposed to the teaching of evolution often make well-rehearsed claims about the science that sound, to the layperson, powerful and convincing. And many people who support the teaching of evolution-students, teachers, parents, administrators-do not have the background to respond. They know that scientists have pretty thoroughly dismantled these arguments, but they don't have a handy way of responding to these attacks. The Counter-Creationism Handbook is a one-stop resource for addressing over 400 of the most prevalent claims made by creationists. Each claim is followed by a succinct and scientifically valid rebuttal, and the book includes print and on-line resources for further reading and information.Whether you are a preservice, inservice or veteran teacher, through the inquiry and reflection of teacher research you can learn about your practice and your students and gain a deeper understanding of the potential that the inquiry process has to support powerful student learning. This useful resource covers claims made about the disciplines of philosophy, biology, paleontology, geology, astronomy, physics and mathematics, history, linguistics, and folklore The work addresses the claims of Biblical creationism, intelligent design creationism, and even some creationism based on other religions. An introduction covers how to address creationists in different venues, how to deal with novel claims, and why accurate science is important. The volume is organized thematically, with extensive cross-referencing, so that someone presented with an unfamiliar claim can quickly find the argument, understand its flaws, provide a rebuttal, and see where to go for more information.

'A book rich and various in ideas and substance...It belongs on the shelf of anyone wanting to keep up with what is happening in ethology.'-Bioscience, from a review of an earlier volume Beginning with Volume 11, Nicholas S. Thompson takes over the editorship of this remarkable series. For this volume, contributors bring fresh perspectives to the subject of natural design.