Three major aspects that distinguish this book are that (1) it contains the most detailed analysis of the sexual reproduction (oogenesis, fertilization and embryonic incubation) in a particular phylum of the aquatic invertebrates (Bryozoa) ever made; this analysis is based on an exhaustive review of the literature on that topic published over the last 260 years, as well as extensive original histological, anatomical and morphological data obtained during studies of both extant and extinct species; (2) this broad analysis has made it possible to reconstruct the major patterns, stages and trends in the evolution of sexual reproduction in various bryozoan clades, showing numerous examples of parallelisms during transitions from broadcasting to embryonic incubation, from planktotrophic to non-feeding larvae and from lecithotrophy to placentation; corresponding shifts in oogenesis, fertilization and embryonic development are discussed in detail; and (3) the key evolutionary novelties acquired by Bryozoa are compared with similar innovations that have evolved in other groups of marine invertebrates, showing the general trends in the evolution of their sexual reproduction. Ecological background of these innovations is considered too. Altogether these aspects make the monograph an “Encyclopedia of bryozoan sexual reproduction,� offering an integral picture of the evolution of this complex phenomenon.

This volume explains the key ideas, questions and methods involved in studying the hidden world of vibrational communication in animals. The authors dispel the notion that this form of communication is difficult to study and show how vibrational signaling is a key to social interactions in species that live in contact with a substrate, whether it be a grassy lawn, a rippling stream or a tropical forest canopy. This ancient and widespread form of social exchange is also remarkably understudied. A frontier in animal behavior, it offers unparalleled opportunities for discovery and for addressing general questions in communication and social evolution. In addition to reviews of advances made in the study of several animal taxa, this volume also explores topics such as vibrational communication networks, the interaction of acoustic and vibrational communication, the history of the field, the evolution of signal production and reception and establishing a common vocabulary.

Directed Evolution Library Creation: Methods and Protocols, Second Edition presents user-friendly protocols for both proven strategies and cutting-edge approaches for the creation of mutant gene libraries for directed evolution. As well as experimental methods, information on current computational approaches is provided in a user-friendly format that will allow researchers to make informed choices without needing to comprehend the full technical details of each algorithm. Directed evolution has become a fundamental approach for engineering proteins to enhance activity and explore structure-function relationships, and has supported the rapid development of the field of synthetic biology over the last decade. Divided into three convenient sections, topics include point mutagenesis strategies, recombinatorial methods wherein genetic diversity is sourced from multiple parental genes that are combined via either homology-dependent or -independent techniques and a variety of computational methods to guide the design and analysis of mutant libraries. Written in the successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols and notes on troubleshooting and avoiding known pitfalls. Authoritative and easily accessible, Directed Evolution Library Creation: Methods and Protocols, Second Edition will serve as a reliable manual for both novice and experienced protein engineers and synthetic biologists and will enable further technical innovation and the exploitation of directed evolution for a deeper understanding of protein design and function.

This book details a model of consciousness supported by scientific experimental data from the human brain. It presents how the Corollary Discharge of Attention Movement (CODAM) neural network model allows for a scientific understanding of consciousness as well as provides a solution to the Mind-Body problem. The book provides readers with a general approach to consciousness that is powerful enough to lead to the inner self and its ramifications for the vast range of human experiences. It also offers an approach to the evolution of human consciousness and features chapters on mental disease (especially schizophrenia) and on meditative states (including drug-induced states of mind). Solving the Mind-Body Problem bridges the gap that exists between philosophers of mind and the neuroscience community, allowing the enormous weight of theorizing on the nature of mind to be brought to earth and put under the probing gaze of the scientific facts of life and mind.

This book represents a cutting-edge contribution giving an all-around perspective of eco-immunology today. Beside questions of the utmost importance for the whole community of immunologists, e.g, the intrinsic limits of immunological experiments performed at the bench on a limited number of selected models, the book covers several other facets of the eco-immunological approach, including host-parasite interactions, human aging and population immunology. Throughout the book the importance of population dynamics and evolutionary diversification of immune systems is frequently recalled, and makes the reader aware of the basic similarities and differences existing between humans and the models adopted for studying human immune system. The evidenced differences have been recently challenging the reliability of several established animal models and in the book it is discussed for the first time in analytical terms whether mice are reliable models of human inflammatory disorders.

This book develops and tests an ecological and evolutionary theory of the causes of human values—the core beliefs that guide people’s cognition and behavior—and their variation across time and space around the world. We call this theory the parasite-stress theory of values or the parasite-stress theory of sociality. The evidence we present in our book indicates that both a wide span of human affairs and major aspects of human cultural diversity can be understood in light of variable parasite (infectious disease) stress and the range of value systems evoked by variable parasite stress. The same evidence supports the hypothesis that people have psychological adaptations that function to adopt values dependent upon local infectious-disease adversity. The authors have identified key variables, variation in infectious disease adversity and in the core values it evokes, for understanding these topics and in novel and encompassing ways. Although the human species is the focus in the book, evidence presented in the book shows that the parasite-stress theory of sociality informs other topics in ecology and evolutionary biology such as variable family organization and speciation processes and biological diversity in general in non-human animals.

This volume explores questions about conceptual change from both scientific and philosophical viewpoints by analyzing the recent history of evolutionary developmental biology. It features revised papers that originated from the workshop "Conceptual Change in Biological Science: Evolutionary Developmental Biology, 1981-2011" held at the Max Planck Institute for the History of Science in Berlin in July 2010. The Preface has been written by Ron Amundson. In these papers, philosophers and biologists compare and contrast key concepts in evolutionary developmental biology and their development since the original, seminal Dahlem conference on evolution and development held in Berlin in 1981. Many of the original scientific participants from the 1981 conference are also contributors to this new volume and, in conjunction with other expert biologists and philosophers specializing on these topics, provide an authoritative, comprehensive view on the subject. Taken together, the papers supply novel perspectives on how and why the conceptual landscape has shifted and stabilized in particular ways, yielding insights into the dynamic epistemic changes that have occurred over the past three decades. This volume will appeal to philosophers of biology studying conceptual change, evolutionary developmental biologists focused on comprehending the genesis of their field and evaluating its future directions, and historians of biology examining this period when the intersection of ev olution and development rose again to prominence in biological science.

This book collects three outstanding examples of the work of Mexican biologist Alfonso Luis Herrera (1868-1943), a pioneer in experimental origins of life research. Two of the collected works appear here in English for the first time. Herrera's works represent the attempt to deal experimentally with the issue of an autotrophic origin of life, a possibility that was widely accepted prior to Alexander I. Oparin's ideas regarding the possibility of organic synthesis and the origin of life in an early Earth environment. An active promoter of Darwinian ideas in Latin America, Herrera was also among the first 20th century researchers to attempt to "create life in a test tube." This collection shows the remarkable prescience of researchers in Mexico with regards to laboratory approaches to the problem of the origin of life. It also includes a modern commentary by researchers actively engaged in research in prebiotic evolution and the origins of life, and deeply concerned with the historical development of ideas in these fields. The list includes H. James Cleaves, Antonio Lazcano, Alicia Negron-Gonzalez and Juli Pereto, who discuss in detail the relevance of Herrera's ideas to modern theory and their historical context. The book will expose modern readers and researchers to currents of thinking that have been lost, largely to time and language inaccessibility, of a seminal early theoretical biologist.

Woolly monkeys are large, attractive and widespread primates found throughout many parts of the Amazon basin. It is only in the last twenty-five years or so that long-term studies of woollies in their forest habitat have been successful; they have not generally been successfully kept in captivity. But now, especially because of their size, these creatures are pressed on all sides by bush meat hunters and forest fragmentation. Their future is becoming critically precarious and the editors feel that it is time to showcase these animals with a full book. The editors draw together a number of recent woolly monkey studies from three Amazonian countries, including five taxa of woolly monkeys, four of which have recently been reclassified without using new biological criteria as species rather than subspecies (Groves, 2001, 2005; Rylands & Mittermeier, 2009). This volume provides a diversity of studies by well-known researchers and advanced students on a wide range of subjects using newly generated data, including a criticism of the recent taxonomic changes. The varied information contained within The Woolly Monkey: Behavior, Ecology, Systematics and Captive Research will help readers understand these handsome animals and will, we hope, energize them to contribute to their conservation.

This volume describes features of autonomy and integrates them into the recent discussion of factors in evolution. In recent years ideas about major transitions in evolution are undergoing a revolutionary change. They include questions about the origin of evolutionary innovation, their genetic and epigenetic background, the role of the phenotype and of changes in ontogenetic pathways. In the present book, it is argued that it is likewise necessary to question the properties of these innovations and what was qualitatively generated during the macroevolutionary transitions. The author states that a recurring central aspect of macroevolutionary innovations is an increase in individual organismal autonomy whereby it is emancipated from the environment with changes in its capacity for flexibility, self-regulation and self-control of behavior. The first chapters define the concept of autonomy and examine its history and its epistemological context. Later chapters demonstrate how changes in autonomy took place during the major evolutionary transitions and investigate the generation of organs and physiological systems. They synthesize material from various disciplines including zoology, comparative physiology, morphology, molecular biology, neurobiology and ethology. It is argued that the concept is also relevant for understanding the relation of the biological evolution of man to his cultural abilities. Finally the relation of autonomy to adaptation, niche construction, phenotypic plasticity and other factors and patterns in evolution is discussed. The text has a clear perspective from the context of systems biology, arguing that the generation of biological autonomy must be interpreted within an integrative systems approach.

These chapters provide up-to-date information on nematophagous fungi, particularly those of the Orbiliaceae in Ascomycota, whose asexual states produce nematode-trapping devices. The authors consider fungal-nematode interactions, fossil fungi, the biodiversity, ecology and geographical distribution of nematode-trapping fungi, and their potential use in biocontrol of nematodes, all in detail. Nematode-trapping fungi with adhesive or mechanical hyphal traps are the main focus of this book which begins with an overview of the data on nematode-trapping fungi, including their taxonomy, phylogeny and evolution. Subsequent chapters expand upon the methods and techniques used to study these fascinating fungi. Keys for genera of Arthrobotrys, Drechslerella and Dactylellina, which include all reported species of predatory orbiliaceous fungi are presented and numerous species from these genera are morphologically described and illustrated. The ecology of nematode-trapping fungi is expertly presented: their occurrence and habitats, their geographical and seasonal distribution and the effects of soil conditions and nematode density on their distribution all feature amongst the relevant themes. Further chapters examine the use of nematode-trapping fungi in biological control and the authors consider nematicidal activities in detail, exploring the many compounds from fungi that feature in nematicidal activities and of course useful paths for further study on this topic. This is a highly informative and carefully presented book, providing scientific insight for scholars with an interest in fungi and in biological control of nematodes.

As a species, we are currently experiencing dramatic shifts in our lifestyle, family structure, health, and global contact. Evolutionary Anthropology provides a powerful theoretical framework to study such changes, revealing how current environments and legacies of past selection shape human diversity. This book is the first major review of the emerging field of Applied Evolutionary Anthropology bringing together the work of an international group of evolutionary scientists, addressing many of the major public health and social issues of this century. Through a series of case studies that span both rural and urban situations in Africa, Asia, Europe and South America, each chapter addresses topics such as natural resource management, health service delivery, population growth and the emergence of new family structures, dietary, and co-operative behaviours. The research presented identifies the great, largely untapped, potential that Applied Evolutionary Anthropology holds to guide the design, implementation and evaluation of effective social and public health policy. This book will be of interest to policy-makers and applied researchers, along with academics and students across the biological and social sciences.

Bryophytes, which are important constituents of ecosystems globally and often dominate carbon and water dynamics at high latitudes and elevations, were also among the pioneers of terrestrial photosynthesis. Consequently, in addition to their present day ecological value, modern representatives of these groups contain the legacy of adaptations that led to the greening of Earth. This volume brings together experts on bryophyte photosynthesis whose research spans the genome and cell through whole plant and ecosystem function and combines that with historical perspectives on the role of algal, bryophyte and vascular plant ancestors on terrestrialization of the Earth. The eighteen well-illustrated chapters reveal unique physiological approaches to achieving carbon balance and dealing with environmental limitations and stresses that present an alternative, yet successful strategy for land plants.

This book reports significant progress of scientific research on horseshoe crabs, including aspects of evolution, genetics, ecology, population dynamics, general biology and physiology, within the recent 10 years. It also highlights the emerging issues related to world-wide conservation threats, status and needs. The contributions in this book represent part of an ongoing global effort to increase data and concept sharing to support basic research and advance conservation for horseshoe crabs.

This volume provides in-depth reviews of model systems that exemplify the arms race in host-pathogen interactions. Somatic adaptations are responsible for the individualization of biological responses to the environment, and the continual struggle between host immune systems and invading pathogens has given rise to corresponding processes that produce molecular variation. Whether in mollusks or human beings, various host somatic mechanisms have evolved independently, providing responses to counter rapidly-changing pathogens. The pathways they utilize can include non-heritable changes involving RNA and post-translational modifications, or changes that produce somatic DNA recombination and mutation. For infectious organisms such as protozoans and flatworms, antigenic variation is central to their survival strategy. Evolving the ability to evade the host immune system not only increases their chances of survival but is also necessary for successful re-infection within the host population.

More than 40,000 species of mites have been described, and up to 1 million may exist on earth. These tiny arachnids play many ecological roles including acting as vectors of disease, vital players in soil formation, and important agents of biological control. But despite the grand diversity of mites, even trained biologists are often unaware of their significance. Mites: Ecology, Evolution and Behaviour (2nd edition) aims to fill the gaps in our understanding of these intriguing creatures. It surveys life cycles, feeding behaviour, reproductive biology and host-associations of mites without requiring prior knowledge of their morphology or taxonomy. Topics covered include evolution of mites and other arachnids, mites in soil and water, mites on plants and animals, sperm transfer and reproduction, mites and human disease, and mites as models for ecological and evolutionary theories.

This book addresses the differentiation control of skeletal muscle in different locations of the vertebrate body Particular attention is paid to novel regulatory molecules and signals as well as the heterogeneity of origin that have revealed a developmental overlap between skeletal and cardiac muscle. Different functional muscle groups are the product of the evolution of the vertebrate classes, making a phylogenetic comparison worthwhile for understanding the role of muscle stem cells and precursors in myogenesis. New insights into the hierarchy of transcription factors, particularly in the context of these different muscle groups have been gained from detailed investigations of the spatio-temporal and regulatory relationships derived from mouse and zebrafish genetics and avian microsurgery. Importantly, epigenetic mechanisms that have surfaced recently, in particular the role of MyomiRs, are also surveyed. With an eye to the human patient, encouraging results have been generated that identify parallels between embryonic myogenesis and regenerating myofibers due to common regulatory molecules. On the other hand, both processes differ considerably in quality and complexity of the processes employed. Interestingly, the heterogeneity in embryonic sources from which skeletal muscle groups in the vertebrate including the human body take origin is paralleled by differences in their susceptibility to particular muscle dystrophies as well as by the characteristics of the satellite cells involved in regeneration. The progress that has been made in the field of muscle stem cell biology, with special focus on the satellite cells, is outlined in this book by experts in the field. The authors review recent insights of the heterogeneous nature of these satellite cells regarding their gene signatures and regeneration potential. Furthermore, an improved understanding of muscle stem cells seems only possible when we study the impact of the cell environment on efficient stem cell replacement therapies for muscular dystrophies, putting embryological findings from different vertebrate classes and stem cell approaches into context.

Together with early theoretical work in population genetics, the debate on sources of genetic makeup initiated by proponents of the neutral theory made a solid contribution to the spectacular growth in statistical methodologies for molecular evolution. Evolutionary Genomics: Statistical and Computational Methods is intended to bring together the more recent developments in the statistical methodology and the challenges that followed as a result of rapidly improving sequencing technologies. Presented by top scientists from a variety of disciplines, the collection includes a wide spectrum of articles encompassing theoretical works and hands-on tutorials, as well as many reviews with key biological insight. Volume 1 includes a helpful introductory section of bioinformatician primers followed by detailed chapters detailing genomic data assembly, alignment, and homology inference as well as insights into genome evolution from statistical analyses. Written in the highly successful Methods in Molecular Biology (TM) series format, this work provides the kind of advice on methodology and implementation that is crucial for getting ahead in genomic data analyses. Comprehensive and cutting-edge, Evolutionary Genomics: Statistical and Computational Methods is a treasure chest of state-of the-art methods to study genomic and omics data, certain to inspire both young and experienced readers to join the interdisciplinary field of evolutionary genomics.

This book is the first of its kind to explain the fundamentals of evolutionary genomics. The comprehensive coverage includes concise descriptions of a variety of genome organizations, a thorough discussion of the methods used, and a detailed review of genome sequence processing procedures. The opening chapters also provide the necessary basics for readers unfamiliar with evolutionary studies. Features: introduces the basics of molecular biology, DNA replication, mutation, phylogeny, neutral evolution, and natural selection; presents a brief evolutionary history of life from the primordial seas to the emergence of humans; describes the genomes of prokaryotes, eukaryotes, vertebrates, and humans; reviews methods for genome sequencing, phenotype data collection, homology searches and analysis, and phylogenetic tree and network building; discusses databases of genome sequences and related information, evolutionary distances, and population genomics; provides supplementary material at an associated website.

The origin of energy-conserving organelles, the mitochondria of all aerobic eukaryotes and the plastids of plants and algae, is commonly thought to be the result of endosymbiosis, where a primitive eukaryote engulfed a respiring -proteobacterium or a phototrophic cyanobacterium, respectively. While present-day heterotrophic protists can serve as a model for the host in plastid endosymbiosis, the situation is more difficult with regard to (the preceding) mitochondrial origin: Two chapters describe these processes and theories and inherent controversies. However, the emphasis is placed on the evolution of phototrophic eukaryotes: Here, intermediate stages can be studied and the enormous diversity of algal species can be explained by multiple secondary and tertiary (eukaryote-eukaryote) endosymbioses superimposed to the single primary endosymbiotic event. Steps crucial for the establishment of a stable, mutualistic relationship between host and endosymbiont, as metabolic symbiosis, recruitment of suitable metabolite transporters, massive gene transfer to the nucleus, development of specific translocases for the re-import of endosymbiont proteins, etc. are discussed in individual chapters. Experts, dealing with biochemical, genetic and bioinformatic approaches provide insight into the state of the art of one of the central themes of biology. The book is written for graduate students, postdocs and scientists working in evolutionary biology, phycology, and phylogenetics.

The study of animal communication has led to significant progress in our general understanding of motor and sensory systems, evolution, and speciation. However, one often neglected aspect is that signal exchange in every modality is constrained by noise, be it in the transmission channel or in the nervous system. This book analyses whether and how animals can cope with such constraints, and explores the implications that noise has for our understanding of animal communication. It is written by leading biologists working on different taxa including insects, fish, amphibians, lizards, birds, and mammals. In addition to this broad taxonomic approach, the chapters also cover a wide array of research disciplines: from the mechanisms of signal production and perception, to the behavioural ecology of signalling, the evolution of animal communication, and conservation issues. This volume promotes the integration of the knowledge gained by the diverse approaches to the study of animal communication and, at the same time, highlights particularly interesting fields of current and future research.

Most studies of bacterial or fungal infectious diseases focus separately on the pathogenic microbe, the host response, or the characterization of therapeutic compounds. Compartmentalization of pathogenesis-related research into an analysis of the "pathogen", the "host," or the "antimicrobial compound" has largely been dictated by the lack of model systems in which all of these approaches can be used simultaneously, as well as by the traditional view that microbiology, immunology, and chemical biology and pharmacology are separate disciplines. An increasing number of workers from different fields have turned to insects, fish, worms and other model hosts as facile, ethically expedient, relatively simple, and inexpensive hosts to model a variety of human infectious diseases and to study host responses and innate immunity. Because many of these hosts are genetically tractable, they can be used in conjunction with an appropriate pathogen to facilitate the discovery of novel features of the host innate immune response. This book provides a series of reports from the 1st International Conference on Model Hosts. This first of its kind meeting focused on invertebrate, vertebrate and amoeboid systems used for the study of host-pathogen interactions, virulence and immunity, as well as on the relevance of these pathogenesis systems and mammalian models. Importantly, a common, fundamental set of molecular mechanisms is employed by a significant number of microbial pathogens against a widely divergent array of metazoan hosts. Moreover, the evolutionarily conserved immune responses of these model hosts have contributed important insights to our understanding of the innate immune response of mammals. This book provides a series of reports from the 1st International Conference on Model Hosts. This first of its kind meeting focused on invertebrate, vertebrate and amoeboid systems used for the study of host-pathogen interactions, virulence and immunity, as well as on the relevance of these pathogenesis systems and mammalian models. Importantly, a common, fundamental set of molecular mechanisms is employed by a significant number of microbial pathogens against a widely divergent array of metazoan hosts. Moreover, the evolutionarily conserved immune responses of these model hosts have contributed important insights to our understanding of the innate immune response of mammals.

This volume investigates the effects of human activities on coral reefs, which provide important life-supporting systems to surrounding natural and human communities. It examines the self-reinforcing ecological, economic and technological mechanisms that degrade coral reef ecosystems around the world. Topics include reefs and limestones in Earth history; the interactions between corals and their symbiotic algae; diseases of coral reef organisms; the complex triangle between reef fishes, seaweeds and corals; coral disturbance and recovery in a changing world. In addition, the authors take key recent advances in DNA studies into account which provides new insights into the population biology, patterns of species distributions, recent evolution and vulnerabilities to environmental stresses. These DNA analyses also provide new understandings of the limitations of coral responses and scales of management necessary to sustain coral reefs in their present states. Coral reefs have been essential sources of food, income and resources to humans for millennia. This book details the delicate balance that exists within these ecosystems at all scales, from geologic time to cellular interactions and explores how recent global and local changes influence this relationship. It will serve as an indispensable resource for all those interested in learning how human activities have affected this vital ecosystem around the world.

This is the first of two volumes on Gentianaceae. Comprising twelve chapters, it centres upon the characterization and ecology of Gentianaceae worldwide, with emphasis on the application of molecular and cytological approaches in relation to taxonomy. The first three chapters consider the classification of the family and review the advances in research since the earlier revision published in 2002, which resulted in the reclassification of some plants and the naming of new genera. The next chapter provides the most comprehensive report to date of the systematics of South American Neotropical woody Gentians. Other reviews include details of the Gentianaceae in Eastern Europe. The key biochemical steps that result in the diversity of Gentian flower colors, the cytology of European species and an historical account of the importance of Gentians in herbal medicines are also covered. Furthermore, an analysis of gene expression in overwintering buds is presented, discussing several aspects of plant taxonomy, phenotypic characteristics, phylogeography and pedigree. Two contributions highlight the importance of Gentians in India, and the last chapter presents evidence for the importance of Glomeromycota in developing arbuscular mycorrhizal associations with the roots of Gentians. This volume provides the basis for the biotechnological approaches that are considered in the companion book The Gentianaceae - Volume 2: Biotechnology and Applications.

Entomology as a science of inter-depended branches like molecular entomology, insect biotechnology, has made rapid progress. This also implies that there is an urgent need to manage the available resources. In the past five decades, entomology has taken giant steps ahead. The aim of this work is to integrate perspectives across molecular and biochemistry, physiology, reproduction, developmental biology, molecular evolution, genetics and RNAi applications. This century is proclaimed as the Era of Biotechnology and it consists of all types of Mol-Bio-Gen applications, which is an essential component for a thorough understanding of the insect biology. The aim of this work is to provide the comprehensive review of recent research from various geographic areas around the world and contributing authors that are recognized experts in their respective field of Genomic entomology. This Volume emphasizes upon the need for and relevance of studying molecular aspects of entomology in Universities, Agricultural Universities and other centers of molecular research. It will also serve as a landmark source for Insect advance science technology.