Important practical implications are established by case reports and specific examples. The present book is the ideal complement to the practitioner 's manual Techniques in Molecular Systematics and Evolution, recently published by the same editors in the Birkh user MTBM book series.

The first part of this book deals with important applications of evolutionary and systematic analysis at different taxonomic levels. The second part discusses DNA multiple sequence alignment, species designations using molecular data, evo-devo and other topics that are problematic or controversial. In the last part, novel topics in molecular evolution and systematics, like genomics, comparative methods in molecular evolution and the use of large data bases are described. The final chapter deals with problems in bacterial evolution, considering the increasing access to large numbers of complete genome sequences.

This book is about morphogenesis as the genesis of forms. It is not restricted to plants growing from seed or animals developing from an embryo (although these do supply the most abundant examples) but also addresses kindred processes, from inorganic to social to biomorphic technology. It is about our morphogenetic universe: unplanned, unfair and frustratingly complicated but benevolent in allowing us to emerge, survive, and inquire into its laws.

Taking up the historical evolution of Darwin and his theories and the cultural responses they have inspired, Reflecting on Darwin poses the following questions: 'How are the apparatuses in the mid-nineteenth century and at the turn of the twenty-first century interconnected with bio-scientific paradigms in art, literature, culture and science?' 'How are naturalism, determinism and Darwinism - the eugenics of the nineteenth century and the genetic coding of the twentieth century - positioned, embodied and staged in various media configurations and media genres?' and 'How have particular media apparatuses formed, displaced or stabilized the various concepts of humankind in the framework of evolutionary theory?' Ranging from the early circulation of Darwin's ideas to the present, this interdisciplinary collection pays particular attention to Darwin's postmillennial reception. Beginning with an overview of the historical development of contemporary ecological and ethical fears, Reflecting on Darwin then turns to Darwin's influence on contemporary media, neo-Victorian literature and culture, science fiction literature and film, and contemporary theory. In examining the plurality of ways in which Darwin has been rewritten and reappropriated, this unique volume both mirrors and inspects the complexity of recent debates in Victorian and neo-Victorian studies.

Manipulating phylogenetic tree with associated data using tidy verbs Integrating phylogenetic data from diverse sources Visualing phylogenetic data using grammar of graphics

Cognitive Evolution provides an in-depth exploration of the natural history of cognition, from the beginning of life on Earth to present-day humans. Drawing together evolutionary, comparative, and neuroscience research, the book brings a unique cognitive perspective to evolutionary psychology. The second edition features the latest research and illustrations on emerging topics, making it a true update of the field. After introducing evolution, Boles adopts an information processing perspective - from inputs to outputs, with all the mental processes in between to provide a systematic overview of the evolution of cognition, including its sensory, motoric, perceptual, and cognitive components. The combination of evolutionary, comparative, and neuroscience perspectives provides an insight on topics like vision, handedness, tools and planning, spatial perception, pattern recognition, memory, language, and consciousness. Cognitive Evolution is a comprehensive, essential read for advanced undergraduate and postgraduate students of cognitive and evolutionary psychology. Researchers will find it a useful and insightful synthesis of the field, yet even the curious public will find in it much that is surprising and enlightening.

Rhetorical scholarship has for decades relied solely on culture to explain persuasive behavior. While this focus allows for deep explorations of historical circumstance, it neglects the powerful effects of biology on rhetorical behavior - how our bodies and brains help shape and constrain rhetorical acts. Not only is the cultural model incomplete, but it tacitly endorses the fallacy of human exceptionalism. By introducing evolutionary biology into the study of rhetoric, this book serves as a model of a biocultural paradigm. Being mindful of biological and cultural influences allows for a deeper view of rhetoric, one that is aware of the ubiquity of persuasive behavior in nature. Human and nonhuman animals, and even some plants, persuade to survive - to live, love, and cooperate. That this broad spectrum of rhetorical behavior exists in the animal world demonstrates how much we can learn from evolutionary biology. By incorporating scholarship on animal signaling into the study of rhetoric, the author explores how communication has evolved, and how numerous different species of animals employ similar persuasive tactics in order to overcome similar problems. This cross-species study of rhetoric allows us to trace the origins of our own persuasive behaviors, providing us with a deeper history of rhetoric that transcends the written and the televised, and reveals the artifacts of our communicative past.

"The facts of variability, of the struggle for existence, of adaptation to conditions, were notorious enough; but none of us had suspected that the road to the heart of the species problem lay through them, until Darwin and Wallace dispelled the darkness."T H Huxley (1887)Darwin is one of the most famous scientists in history. But he was not alone. Comparatively forgotten, Wallace independently discovered evolution by natural selection in Southeast Asia. This book is based on the most thorough research ever conducted on Wallace's voyage. Closely connected, but worlds apart, Darwin and Wallace's stories hold many surprises. Did Darwin really keep his theory a secret for twenty years? Did he plagiarise Wallace? Were their theories really the same? How did Wallace hit on the solution, and on which island? This book reveals for the first time the true story of Darwin, Wallace and the discovery that would change our understanding of life on Earth forever.

"The facts of variability, of the struggle for existence, of adaptation to conditions, were notorious enough; but none of us had suspected that the road to the heart of the species problem lay through them, until Darwin and Wallace dispelled the darkness."T H Huxley (1887)Darwin is one of the most famous scientists in history. But he was not alone. Comparatively forgotten, Wallace independently discovered evolution by natural selection in Southeast Asia. This book is based on the most thorough research ever conducted on Wallace's voyage. Closely connected, but worlds apart, Darwin and Wallace's stories hold many surprises. Did Darwin really keep his theory a secret for twenty years? Did he plagiarise Wallace? Were their theories really the same? How did Wallace hit on the solution, and on which island? This book reveals for the first time the true story of Darwin, Wallace and the discovery that would change our understanding of life on Earth forever.

From one of America's best-known biologists, a revolutionary new way of thinking about evolution that shows "why, in light of our origins, humans are still special" (Edward J. Larson, Pulitzer Prize-winning author of Evolution). Once we had a special place in the hierarchy of life on Earth--a place confirmed by the literature and traditions of every human tribe. But then the theory of evolution arrived to shake the tree of human understanding to its roots. To many of the most passionate advocates for Darwin's theory, we are just one species among multitudes, no more significant than any other. Even our minds are not our own, they tell us, but living machines programmed for nothing but survival and reproduction. In The Human Instinct, Brown University biologist Kenneth R. Miller "confronts both lay and professional misconceptions about evolution" (Publishers Weekly, starred review), showing that while evolution explains how our bodies and brains were shaped, that heritage does not limit or predetermine human behavior. In fact, Miller argues in this "highly recommended" (Forbes) work that it is only thanks to evolution that we have the power to shape our destiny. Equal parts natural science and philosophy, The Human Instinct makes an "absorbing, lucid, and engaging...case that it was evolution that gave us our humanity" (Ursula Goodenough, professor of biology at Washington University in St. Louis).

Chronic inflammation is one of the major pathological bases manifesting the development of gastric cancers, hepatitis and hepatocellular carcinoma, cervical cancer, ulcerative colitis and colorectal cancer [1]. Microbial infections, viral infections and autoimmune responses can lead to chronic inflammation-associated cancer formation. Human herpesviruses, such as human cytomegalovirus (HCMV) and Kaposi sarcoma herpesvirus (KSHV) are known to be associated with tumorigenesis and tumor progression. HCMV infection potentiates malignancies of colon cancer and malignant glioma [2,3]. KSHV was initially discovered from Kaposi's sarcoma lesion of an AIDS patient [4]. It was subsequently discovered that KSHV contributed to the pathogenesis of KS, primary effusion lymphoma [5] and lymphoproliferative disorder multicentric Castleman's disease. Emerging evidence shows that herpesvirus infection interferes or inhibits host cell immune defense and maintains a tumor-promoting microenvironment by expressing virulent homologues of host cell proteins that disturb normal cell cycle progression and leads to apoptosis of the host cells. For example, cellular growth and transformation are induced by viral-encoded homologues of cytokines, chemokines or chemokine receptors [6]. The constitutive expression of viral chemokine GPCRs triggers prolonged activation of G protein signaling and eventually becomes the major inputs for chronic leukocyte infiltration and cancer development. GPCRs can serve as proto-oncogenes since overexpression of various wild type GPCRs can transform cells in the presence of their specific ligands. Mutations on GPCRs may result in constitutive signaling and oncogenesis [7]. Naturally occurring mutations in GPCRs have been identified in human tumors [8,9].

The current volume includes articles on the conceptual relationship of ontogeny, phylogeny, and classification; correlation studies of spatial patterns of genetic variation; and the evolution of flower display and reward. about a previous volume: 'Excellent; we should all press for its maintenance in our institution's libraries.' Biologist

This book explores the evolutionary and cognitive foundations of human communication, focusing on narrative as its distinctive dimension. Within a framework of continuity with both the communication of our hominin predecessors and that of non-human animals, the book is about a twofold proposal. It includes the idea that (human and animal) communication has an intrinsically persuasive nature along with the hypothesis that humans developed narrative forms of communication in order to enhance their persuasive abilities. In this view, narrative persuasion becomes the feature that distinguishes human communication from animal communication. The study of the transition from animal communication to language addresses both the selective pressures that led communication for persuasive purposes to take a narrative form and the cognitive architectures and expressive systems that enabled our ancestors to cope with the selective pressures of persuasive/narrative-based communication. Language evolution is interdisciplinary, even from the specific perspective of evolutionary pragmatics chosen here. Therefore, this book is intended for researchers working in fields such as cognitive sciences, philosophy, evolutionary biology, cognitive psychology, and primatology. It also represents a valuable resource for advanced students in cognitive sciences, linguistics, and philosophy.

The three greatest scientific mysteries, which remain poorly understood, are the origin of the universe, the origin of life and the development of consciousness. This book describes the processes preceding the Big Bang, the creation of matter, the concentration of that matter into stars and planets, the development of simple life forms and the theory of evolution that has given higher life forms, including mankind.There are many popular and excellent science books that present various aspects of science. However, this book follows a narrow scientific pathway from the Big Bang to mankind, and depicts the causal relationship between each step and the next. The science covered will be enough to satisfy most readers. Many important areas of science are dealt with, and these include cosmology, particle physics, atomic physics, galaxy and star formation, planet formation and aspects of evolution. The necessary science is described in a narrative form that general-interest readers should understand, without the use of equations or formulae.This 2nd edition includes several updates on the subjects that form the pillars of this book. They are: cosmology and astronomy, the features and formation of the solar system, the origin of life, and genetics and evolution. This book will appeal to readers with an interest in biology and those curious about the origins of the universe.

The three greatest scientific mysteries, which remain poorly understood, are the origin of the universe, the origin of life and the development of consciousness. This book describes the processes preceding the Big Bang, the creation of matter, the concentration of that matter into stars and planets, the development of simple life forms and the theory of evolution that has given higher life forms, including mankind.There are many popular and excellent science books that present various aspects of science. However, this book follows a narrow scientific pathway from the Big Bang to mankind, and depicts the causal relationship between each step and the next. The science covered will be enough to satisfy most readers. Many important areas of science are dealt with, and these include cosmology, particle physics, atomic physics, galaxy and star formation, planet formation and aspects of evolution. The necessary science is described in a narrative form that general-interest readers should understand, without the use of equations or formulae.This 2nd edition includes several updates on the subjects that form the pillars of this book. They are: cosmology and astronomy, the features and formation of the solar system, the origin of life, and genetics and evolution. This book will appeal to readers with an interest in biology and those curious about the origins of the universe.

The Oxford Handbook of Philosophy of Biology is an exciting collection of new essays written especially to give the reader an introduction to one of the most vibrant areas of scholarship today, and at the same time to move the subject forward dramatically. Written in a clear and rigorous style it will give the more experienced scholar much to think about and will also be of great value to the new student of the subject. The handbook covers the history of the topic, then moves into important analyses of contemporary evolutionary thinking, and continues with discussions of genetics and the moral and epistemological foundations of our understanding of heredity. The book goes on to cover ecology, behavior and morality, and does not neglect religion or feminist issues. Finally, it takes up matters to do with language and metaphor.
The authors range from the senior and experienced to new and exciting young scholars. The Oxford Handbook of Philosophy of Biology is a collection that will be of interest to philosophers of science, to philosophers generally, as well as biologists of all kinds. There is no better way to learn about this dynamic field than through the essays in this volume.

This book compares the three most prominent representatives of evolutionary algorithms - genetic algorithms, evolution strategies, and evolutionary programming - computational methods at the border between computer science and evolutionary biology. The algorithms are explained within a common formal framework, thereby clarifying the similarities and differences of these methods. The author also presents new results regarding the role of mutation and selection in genetic algorithms and uses a meta-evolutionary approach to confirm some of the theoretical results.

Charles Darwin was a bumbling neophyte naturalist when he boarded the Beagle in 1831. Through the five years that followed, as the ship hugged the coastline of South America, Darwin found himself crawling through waist-deep mud, climbing towerlike trees in the rainforest, and scaling craggy Patagonian cliffs as he collected specimens and closely observed the relationship between the creatures he stalked and the astonishing, utterly unfamiliar landscapes where he found them. What happened to Darwin? That's the question Lyanda Lynn Haupt compellingly explores in a narrative that puts us inside the young Darwin's shoes - and brings nose to nose with dung beetles, ostriches, and all form of wild creatures. By mining Darwin's lesser-known works - diaries, correspondence, his ornithological journals, unruly little pocket notebooks - Haupt illuminates the process that shaped Darwin's vision of the workings of nature. Her book not only chronicles Darwin's transformation from uncertain amateur to genius but reminds us how and why, in our own world as well as Darwin's, attention to small things can make a big difference.

In The Resurgence of Evolutionary Biology Terry Hoy charts the intersection between political theory and the intellectual debate over human evolution. The book deals with the contemporary interpretation of Darwinism as an apology for racism, imperialism, and capitalism. Hoy argues that this perspective underlies the contemporary debates between proponents of both genetic and environmental determinants of behavior. In response to several leading thinkers in the field--principally Edward Wilson, Stephen Gould and R. C. Lewontin--Hoy presents the neo-Darwinian synthesis of Edwin Mayr as a mediation between these two schools of thought. This concise work is essential reading for scholars of political theory and philosophy, and anyone interested in seeking to understand the rise and fall--and rise again--of Darwinism and the contemporary political relevance of Aristotelian-Darwinian naturalism.

This is the story of a profound revolution in the way biologists explore life's history, understand its evolutionary processes, and reveal its diversity. It is about life's smallest entities, deepest diversity, and greatest cellular biomass: the microbiosphere. Jan Sapp introduces us to a new field of evolutionary biology and a new brand of molecular evolutionists who descend to the foundations of evolution on Earth to explore the origins of the genetic system and the primary life forms from which all others have emerged. In so doing, he examines-from Lamarck to the present-the means of pursuing the evolution of complexity, and of depicting the greatest differences among organisms.
The New Foundations of Evolution takes us into a world that classical evolutionists could never have imagined: a deep phylogeny based on three domains of life and multiple kingdoms, and created by mechanisms very unlike those considered by Darwin and his followers. Evolution by leaps seems to occur regularly in the microbial world where molecular evolutionists have shown the inheritance of acquired genes and genomes are major modes of evolutionary innovation.
Revisiting the history of microbiology for the first time from the perspective of evolutionary biology, Sapp shows why classical Darwinian conceptions centering on questions of the origin of species were forged without a microbial foundation, why classical microbiologists considered it impossible to know the course of evolution, and classical molecular biologists considered the evolution of the molecular genetic system to be beyond understanding. In telling this stirring story of scientific iconoclasm, this book elucidates how the new evolutionary biology arose, what methods and assumptions underpin it, and the fiery controversies that continue to shape biologists' understanding of the foundations of evolution today.

We know the universe has a history, but does it also have a story of self-creation to tell? Yes, in Roy R. Gould’s account. He offers a compelling narrative of how the universe—with no instruction other than its own laws—evolved into billions of galaxies and gave rise to life, including humans who have been trying for millennia to comprehend it. Far from being a random accident, the universe is hard at work, extracting order from chaos. Making use of the best current science, Gould turns what many assume to be true about the universe on its head. The cosmos expands inward, not outward. Gravity can drive things apart, not merely together. And the universe seems to defy entropy as it becomes more ordered, rather than the other way around. Strangest of all, the universe is exquisitely hospitable to life, despite its being constructed from undistinguished atoms and a few unexceptional rules of behavior. Universe in Creation explores whether the emergence of life, rather than being a mere cosmic afterthought, may be written into the most basic laws of nature. Offering a fresh take on what brought the world—and us—into being, Gould helps us see the universe as the master of its own creation, not tethered to a singular event but burgeoning as new space and energy continuously stream into existence. It is a very old story, as yet unfinished, with plotlines that twist and churn through infinite space and time.

It has become received wisdom that our world is doomed, that we live in the End of Days. Bleak predictions by psychics and scientists alike portend extreme weather, droughts, famines and floods that will overtake humanity within the century, or sooner. If not global warming, then supervolcanoes, meteoric impacts, nuclear war, bioterrorism, or natural plagues will get us. But whatever happens, Michael Hanlon believes that humankind will go on...and on. The shape of things to come will be strange, and somewhat terrifying, but will very likely seem banal to the people who inhabit it in the future. Humankind may be thrown back to the Stone Age on hundreds of occasions and may come close to extinction. But recovery will follow--each time more rapidly than the last. The world of 10,000 years hence, let alone 100,000,000 years hence, will be strange and almost unrecognizable. But no matter how battered and re-born, it will still be "our" world, populated by "us" through eternity.

This collection of essays looks at sexuality and reproduction from an evolutionary perspective. Covering experimental discoveries as well as theoretical investigations, the volume explores the relationship between evolution and other areas of human behaviour.

'Inferior is more than just a book. It's a battle cry - and right now, it's having a galvanising effect on its core fanbase' Observer Are women more nurturing than men? Are men more promiscuous than women? Are males the naturally dominant sex? And can science give us an impartial answer to these questions? Taking us on an eye-opening journey through science, Inferior challenges our preconceptions about men and women, investigating the ferocious gender wars that burn in biology, psychology and anthropology. Angela Saini revisits the landmark experiments that have informed our understanding, lays bare the problem of bias in research, and speaks to the scientists finally exploring the truth about the female sex. The result is an enlightening and deeply empowering account of women's minds, bodies and evolutionary history. Interrogating what these revelations mean for us as individuals and as a society, Inferior unveils a fresh view of science in which women are included, rather than excluded.

This book comprising 13 chapters, is the second of the four books planned for a series on Progress in Mycological Research. The chapters provide an overview of the progress and shifts that have taken place towards the understanding of the Systematics and Evolution of Fungi with the availability of modern tools and techniques. Most major groups of fungi such as the Chytridiomycota, Zygomycota, Ascomycota, and Basidiomycota have been attempted to be covered. Advances in morphological and molecular taxonomy of highly toxigenic Fusarium species and understanding the phylogeny of the alternarioid hyphomycetes have also been dealt with in their respective chapters. Methods used in fungal evolutionary biology, their theory, examples and potential applications, and proteomics research for rapid diagnosis to invasive candidiasis have been reviewed in two different chapters. The ways in which molecular biologists and morphosystematists can develop synergy between them has been elaborated in the introductory chapter.

Recently, technological progress and the rise of DNA barcoding efforts have led to a significant increase in the availability of molecular datasets on intraspecific variability. Carcinologists and other organismal biologists, who want to use molecular tools to investigate patterns on the scale of populations, face a bewildering variety of genetic markers, analytical methods, and computer programs from which to choose. A modern overview of population genetic and phylogeographic studies, Phylogeography and Population Genetics in Crustacea offers insights to guide research on intraspecific genetic variation in crustaceans. Combining theory and case studies of current best practices, the book helps researchers select methods of analysis and interpret their results. The theoretical chapters discuss the potential of currently used and upcoming molecular markers in the context of marine non-model species. They also gather practical tips and address the effect of seldom-discussed sources of error, such as spatial and temporal variation, stochasticity, and choice of statistical parameters. Case studies of marine and limnic crustaceans from around the world highlight the importance and diversity of sources of population structure in intraspecific variation. Written by an international team of 46 leading experts, the book showcases the use and analysis of molecular markers, including mitochondrial and nuclear DNA sequence data, coding and non-coding sequences, microsatellites, and cytogenetics. It gives researchers and students a valuable summary of current knowledge on the processes that shape genetic variability and geographic distribution patterns in space and time.