This volume presents a compelling collection of state-of-the-art work in algorithmic computational biology, honoring the legacy of Professor Bernard M.E. Moret in this field. Reflecting the wide-ranging influences of Prof. Moret's research, the coverage encompasses such areas as phylogenetic tree and network estimation, genome rearrangements, cancer phylogeny, species trees, divide-and-conquer strategies, and integer linear programming. Each self-contained chapter provides an introduction to a cutting-edge problem of particular computational and mathematical interest. Topics and features: addresses the challenges in developing accurate and efficient software for the NP-hard maximum likelihood phylogeny estimation problem; describes the inference of species trees, covering strategies to scale phylogeny estimation methods to large datasets, and the construction of taxonomic supertrees; discusses the inference of ultrametric distances from additive distance matrices, and the inference of ancestral genomes under genome rearrangement events; reviews different techniques for inferring evolutionary histories in cancer, from the use of chromosomal rearrangements to tumor phylogenetics approaches; examines problems in phylogenetic networks, including questions relating to discrete mathematics, and issues of statistical estimation; highlights how evolution can provide a framework within which to understand comparative and functional genomics; provides an introduction to Integer Linear Programming and its use in computational biology, including its use for solving the Traveling Salesman Problem. Offering an invaluable source of insights for computer scientists, applied mathematicians, and statisticians, this illuminating volume will also prove useful for graduate courses on computational biology and bioinformatics.

The Origin of Species is the landmark book that for better of worse put science and religion at odds. Very few people who have read this book and come away not believing in evolution. The detail of research is even by today's standards stunning; and the writing is still eminently readable. Second only to the Bible in its scope of influence, this book is a pertinent today as when it was first written.

Pennsylvania, a state of diverse geography and geology, is rich in flora. The second edition of The Plants of Pennsylvania identifies the nearly 3,400 species of trees, wildflowers, ferns, grasses, sedges, aquatic plants, and weeds native to or naturalized in the Commonwealth. Retaining the clearly written identification keys and descriptions that made the first edition such an essential reference, this new edition has been reorganized to reflect recent advances in our understanding of plant relationships. Families and genera are listed in a sequence determined by current studies of plant molecular genetics, thus providing new insights for the study of botany. In addition, species have been added to the book as a result of new discoveries. The botanical illustrations of Anna Anisko continue to complement the descriptions and add an element of beauty to the volume. Developed in conjunction with the Pennsylvania Flora Project, and compiled by botanists at the Morris Arboretum, the official arboretum of the Commonwealth of Pennsylvania, the second edition of The Plants of Pennsylvania is the authoritative guide to Pennsylvania's plant life. It will be indispensable to taxonomists, conservationists, ecologists, foresters, land planners, teachers, agricultural county agents, students, and amateur naturalists.

Knowledge of plant names can give insight into largely forgotten beliefs. For example, the common red poppy is known as "Blind Man" due to an old superstitious belief that if the poppy were put to the eyes it would cause blindness. Many plant names derived from superstition, folk lore, or primal beliefs. Other names are purely descriptive and can serve to explain the meaning of the botanical name. For example, Beauty-Berry is the name given to the American shrub that belongs to the genus Callicarpa. Callicarpa is Greek for beautiful fruit. Still other names come from literary sources providing rich detail of the transmission of words through the ages.
Conceived as part of the author's wider interest in plant and tree lore and ethnobotanical studies, this fully revised edition of "Elsevier's Dictionary of Plant Names and Their Origins" contains over 30,000 vernacular and literary English names of plants. Wild and cultivated plants alike are identified by the botanical name. Further detail provides a brief account of the meaning of the name and detailed commentary on common usage.

* Includes color images
* Inclusive of all Latin terms with vernacular derivatives
* The most comprehensive guide for plant scientists, linguists, botanists, and historians

Genetic erosion is the loss of genetic diversity within a species. It can happen very quickly, due to catastrophic events, or changes in land use leading to habitat loss. But it can also occur more gradually and remain unnoticed for a long time. One of the main causes of genetic erosion is the replacement of local varieties by modern varieties. Other causes include environmental degradation, urbanization, and land clearing through deforestation and brush fires. In order to conserve biodiversity in plants, it is important to targets three independent levels that include ecosystems, species and genes. Genetic diversity is important to a species' fitness, long-term viability, and ability to adapt to changing environmental conditions. Chapters in this book are written by leading geneticists, molecular biologists and other specialists on relevant topics on genetic erosion and conservation genetic diversity in plants. This divisible set of two volumes deals with a broad spectrum of topics on genetic erosion, and approaches to biodiversity conservation in crop plants and trees. Volume 1 deals with indicators and prevention of genetic erosion, while volume 2 covers genetic diversity and erosion in a number of plants species. These two volumes will also be useful to botanists, biotechnologists, environmentalists, policy makers, conservationists, and NGOs working to manage genetic erosion and biodiversity.

This book highlights the results from over a year of ethnobotanical research in a rural and an urban community in Jamaica, where we interviewed more than 100 people who use medicinal plants for healthcare. The goal of this research was to better understand patterns of medicinal plant knowledge, and to find out which plants are used in consensus by local people for a variety of illnesses. For this book, we selected 25 popular medicinal plant species mentioned during fieldwork. Through individual interviews, we were able to rank plants according to their frequency of mention, and categorized the medicinal uses for each species as "major" (mentioned by more than 20% of people in a community) or "minor" (mentioned by more than 5%, but less than 20% of people). Botanical identification of plant specimens collected in the wild allowed for cross-linking of common and scientific plant names. To supplement field research, we undertook a comprehensive search and review of the ethnobotanical and biomedical literature. Our book summarizes all this information in detail under specific sub-headings.

For the past decade, there has been success in using conventional map-based strategies in identification and cloning of Quantitative Trait Loci (QTL) in model plant species including tomato and Arabidopsis. These quantitative traits are generally the products of many loci with varying degrees of effect upon the observed phenotypes. Recently, a new approach to genetic mapping has emerged called association mapping. This new technique takes into account the thousands of genes to evaluate for QTL effect and is a more efficient approach that does not require generation of segregating populations/large numbers of progeny. As it can utilize all of the historic recombination events in a diverse population of individuals it can generate higher resolution genetic maps and, is needed to complement current map based cloning methods. Association Mapping in Plants provides both basic and advanced understanding of association mapping and an awareness of population genomics tools to facilitate mapping and identification of the underlying causes of quantitative trait variation in plants. It acts as a useful review of the marker technology, the statistical methodology, and the progress to date. association studies.

This book offers a methodical explanation of our biomass-driven ecosystem, the undeniable uncertainties posed by the response of vegetation to changes in environmental conditions and the fact that humans everywhere have an interest, even an obligation, to cooperate in a global campaign to combat climate change.

Completing the primary genomic sequence of Arabidopsis thaliana was a major milestone, being the first plant genome and well established as the premiere model species in plant biology. Since working drafts of rice (Oryza sativa L.) genome became available (Yu et al. 2002), it has become the s- ond-best model organism in plants representing monocotyledons. Understanding how the genome sequence comprehensively encodes de- lopmental programs and environmental responses is the next major ch- lenge for all plant genome projects. This requires functional characterization of genes, including identification of regulatory sequences. Several functional genomics approaches were initiated to decode the linear sequence of the model plant Arabidopsis thaliana, including full-length cDNA collections, microarrays, natural variation, knockout collections, and comparative sequence analysis (Borevitz and Ecker 2004). Genomics provides the ess- tial tools to speed up the research work of the traditional molecular gene- cist, and is now a scientific discipline in its own right (Borevitz and Ecker 2004).

Great progress has been made in our understanding of pollen-pistil interactions and self-incompatibility (SI) in flowering plants in the last few decades. This book covers a broad spectrum of research into SI, with accounts by internationally renowned scientists. It comprises two sections: Evolution and Population Genetics of SI, Molecular and Cell Biology of SI Systems. The reader will gain an insight into the diversity and complexity of these polymorphic cell-cell recognition and rejection systems. Heteromorphic and homomorphic SI systems and our current understanding of the evolution and phylogeny of these systems, based on the most recent molecular sequence data, are covered. Further, the book presents major advances in our knowledge of the pistil and pollen S-determinants and other unlinked components involved in SI, as well as the apparently diverse cellular regulatory mechanisms utilised to ensure inhibition of self pollen. "

For several decades, Arabidopsis thaliana has been the organism of choice in the laboratories of many plant geneticists, physiologists, developmental biologists, and biochemists around the world. During this time, a huge amount of knowledge has been acquired on the biology of this plant species, which has resulted in the development of molecular tools that account for much more efficient research. The significance that Arabidopsis would attain in biological research may have been difficult to foresee in the 1980s, when its use in the laboratory started. In the meantime, it has become the model plant organism, much the same way as Drosophila, Caenorhabditis, or mouse have for animal systems. Today, it is difficult to envision research at the cutting edge of plant biology without the use of Arabidopsis. Since the first edition of Arabidopsis Protocols appeared, new developments have fostered an impressive advance in plant biology that prompted us to prepare Arabidopsis Protocols, Second Edition. Completion of the Arabidopsis genome sequence offered for the first time the opportunity to have in hand all of the genetic information required for studying plant function. In addition, the development of whole systems approaches that allow global analysis of gene expression and protein and metabolite dynamics has encouraged scientists to explore new scenarios that are extending the limits of our knowledge.

This introductory text assumes little prior scientific knowledge on the part of the student. It includes sufficient information for some shorter introductory botany courses open to both majors and nonmajors, and is arranged so that certain sections can be omitted without disrupting the overall continuity of the course. Stern emphasizes current interests while presenting basic botanical principles. This latest edition incorporates measurable learning outcomes and updated readings. Students will be introduced to the new classification of plants and plant-related species, integration of biotechnology into several chapters and inclusion of new text boxes addressing the areas of ecology, evolution and molecular biology.

Given the universal interest in whether extraterrestrial life has developed or could eventually develop, it is vital that an examination of planetary habitability go beyond simple assumptions. This book has resulted from a workshop at the International Space Science Institute (ISSI) which brought together experts to discuss the multi-faceted problem of how the habitability of a planet co-evolves with the geology of the surface and interior, the atmosphere, and the magnetosphere.

Rapid changes and significant progress have been made in the Agrobacterium field, such as genetically transforming plants for both basic research purposes and agricultural development. In Agrobacterium Protocols, Third Edition, Volumes 1 and 2, a team of leading experts and veteran researchers describe in detail techniques for delivering DNA to plant cells and permanently altering their genomes. This edition emphasizes agricultural crops and plant species with economic values, with updated protocols on 32 plant species and protocols involving 19 new species. Together with the 1st and 2nd editions, these two volumes offer Agrobacterium-mediated genetic transformation protocols for a total of 76 plant species. For a number of important plants such as rice, barley, wheat and citrus, multiple protocols using different starting plant materials for transformation are included. Volume 2 contains 29 chapters with updated techniques for industrial plants, root plants, nuts and fruits, tropic plants, and other important plant species. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Agrobacterium Protocols, Third Edition facilitates the transfer of this rapidly developing technology to all researchers in both fundamental and applied biology.

Microbial Nanobionics: Volume 2, Basic Research Applications continues the important discussion of microbial nanoparticle synthesis with a focus on the mechanistic approach of biosynthesis towards nanobionics. This volume also explores the toxicity of nanomaterials in microbes and their effect on human health and the environment. Special Emphasis is given to the use of polymeric nanomaterials in smart packing for the food industry and agricultural sector. The future of nanomaterials for detection of soil microbes and their interactions and tools for environmental remedies is also comprehensively covered. The rich biodiversity of microbes make them excellent candidates for potential nanoparticle synthesis biofactories. Through a better understanding of the biochemical and molecular mechanisms of the microbial biosynthesis of metal nanoparticles, the rate of synthesis can be better developed and the monodispersity of the product can be enhanced. The characteristics of nanoparticles can be controlled via optimization of important parameters, such as temperature, pH, concentration and pressure, which regulate microbe growth conditions and cellular and enzymatic activities. Large scale microbial synthesis of nanoparticles is a sustainable method due to the non-hazardous, non-toxic and economical nature of these processes. The applications of microbial synthesis of nanoparticles are wide and varied, spanning the industrial, biomedical and environmental fields. Biomedical applications include improved and more targeted antimicrobials, biosensing, imaging and drug delivery. In the environmental fields, nanoparticles are used for bioremediation of diverse contaminants, water treatment, catalysis and production of clean energy. With the expected growth of microbial nanotechnology, this volume will serve as a comprehensive and timely reference.

The Chlamydomonas Sourcebook: Introduction to Chlamydomonas and Its Laboratory Use, Volume One, Third Edition has been fully revised and updated to include a wealth of new resources for the Chlamydomonas community (new mutant libraries, new omics studies, and potentially more information about different Chlamydomonas species in the environment). In addition to updates on molecular techniques and analysis of the sequenced genome, the book presents the latest in research and best practices for applications in research, including methods for culture, preservation of cultures, preparation of media, and more.

Unmanned Aerial Systems for Monitoring Soil, Vegetation, and Riverine Environments provides an overview of how unmanned aerial systems have revolutionized our capability to monitor river systems, soil characteristics, and related processes at unparalleled spatio-temporal resolutions. This capability has enabled enhancements in our capacity to describe water cycle and hydrological processes. The book includes guidelines, technical advice, and practical experience to support practitioners and scientists in increasing the efficiency of monitoring with the help of UAS. The book contains field survey datasets to use as practical exercises, allowing proposed techniques and methods to be applied to real world case studies.

Culinary Herbs & Spices of the World is a reference guide to more than 120 different culinary herbs, spices and flavourings from all the well-known culinary traditions of the world. It is a scientifically accurate and richly illustrated review of the physical appearance, correct names, botany, geographical origin, history, cultivation, harvesting, culinary uses and flavour ingredients of more than 120 different herbs and associated species. A new perspective on the botanical and chemical principles of tastes and flavours is presented, making it an interesting and colourful contribution to the culinary exploration of the world. A fully illustrated, scientifically accurate guide to practically all commercial herbs and spices, with more than 600 colour photographs. Written in an easy style with notes on propagation, cultivation and culinary uses, the book will appeal to a wide readership, from gardeners and food enthusiasts to botanists and academics. Some exotic herbs and spices - especially from Africa and China - are introduced for the first time to European and American readers. The best-known use or signature dish for each herb or spice is given, highlighting hitherto poorly known culinary traditions. Introductory chapters include a concise overview of the main culinary traditions of the world and a fascinating glimpse into the chemistry of taste and flavour. Includes a quick guide and checklist to the culinary herbs and spices of the world.

Oceanic island archipelagos provide many clues about evolutionary patterns and processes, and may rightly be considered as among the best places on earth to seek an understanding of the origin and elaboration of biological diversity. This volume brings together contributions covering a range of important issues in contemporary oceanic island plant biology, focusing on patterns and processes in various island groups (with emphasis on the Bonin, Hawaiian and Juan Fernandez Islands) to provide a stimulating view of the current state of research and a possible agenda for future investigations. Topics addressed include chromosomal variation, macromolecular divergence, island biogeography theory, isolating mechanisms, modes of speciation and evolution of secondary plant products. The result is a volume that reveals the special opportunities offered by oceanic archipelagos for investigating evolutionary phenomena in vascular plants.

This volume examines the molecular basis of all aspects of cell division and cytokinesis in plants. It features 19 chapters contributed by world experts in the specific research fields, providing the most comprehensive and up-to-date knowledge on cell division control in plants. The editors are veterans in the field of plant molecular biology and highly respected worldwide.

Edited by J.A. Callow and supported by an international Editorial Board, Advances in Botanical Research publishes in-depth and up-to-date reviews on a wide range of topics in plant sciences. Currently in its 43rd volume, the series features a wide range of reviews by recognized experts on all aspects of plant genetics, biochemistry, cell biology, molecular biology, physiology and ecology. This eclectic volume features four reviews on cutting-edge topics of interest to post-graduates and researchers alike.
* Includes such topics as defensive ecology of brown algae
* Multidisciplinary reviews written from a broad range of scientific perspectives
* Discusses opportunities for the control of brassicaceous weeds of cropping systems using mycoherbicides
* For over 40 years, series has enjoyed a reputation for excellence
* Contributors internationally recognized authorities in their respective fields

This book provides a comprehensive overview of the benefits of biofertilizers as an alternative to chemical fertilizers and pesticides. Agricultural production has increased massively over the last century due to increased use of chemical fertilizers and pesticides, but these gains have come at a price. The chemicals are not only expensive; they also reduce microbial activity in agricultural soils and accumulate in the food chain, with potentially harmful effects for humans. Accordingly, it is high time to explore alternatives and to find solutions to overcome our increasing dependence on these chemicals. Biofertilizers, which consist of plant remains, organic matter and microorganisms, might offer an alternative. They are natural, organic, biodegradable, eco-friendly and cost-effective. Further, the microbes present in the biofertilizers are important, because they produce nutrients required for plant growth (e.g., nitrogen, phosphorus, potassium), as well as substances essential for plant growth and development (e.g., auxins and cytokinins). Biofertilizers also improve the physical properties, fertility and productivity of soil, reducing the need for chemical fertilizers while maintaining high crop yield. This makes biofertilizers a powerful tool for sustainable agriculture and a sustainable environment. The book covers the latest research on biofertilizers, ranging from beneficial fungal, bacterial and algal inoculants; to microbes for bioremediation, wastewater treatment; and recycling of biodegradable municipal, agricultural and industrial waste; as well as biocontrol agents and bio-pesticides. As such, it offers a valuable resource for researchers, academics and students in the broad fields of microbiology and agriculture.