In recent years, molecular microbiology has emerged as a top, cutting-edge biological discipline, thanks to the multi-disciplinary and integrative approaches taken by investigators seeking to understand the intricacies of the microbial world and how it affects human health and the biosphere. In Bacterial Cell Surfaces: Methods and Protocols, recent advances in structural biology, proteomics, and imaging techniques, together with the traditional biochemical and genetic approaches, are provided in order to present an exciting look into the structure, function, and regulation of the bacterial cell envelope. The detailed volume contains examples of traditional and innovative tools for the study of protein structure and function and enzymatic activities, the purification and analysis of macromolecules and their complexes, and the investigation of regulatory mechanisms and cell biological processes. Written in the highly successful Methods in Molecular Biology (TM) series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Bacterial Cell Surfaces: Methods and Protocols is aimed at the microbiologist, biochemist, or cell biologist, whether a beginning graduate student or a veteran experimentalist, who wishes to learn new methodologies and take advantage of the years of research and protocol optimization from the best laboratories around the world.

This completely updated fifth edition of Bacterial Fish Pathogens is a comprehensive discussion of the biological aspects of the bacteria which cause disease in farmed and wild fish. Since the 4th edition was published in 2007, there has been an upturn in the application of molecular approaches to taxonomy, diagnosis and vaccine development. New pathogens, e.g. Aeromonas schubertii, have been described. Also, there has been the emergence of diseases caused by bacteria which have not been cultured, and which have been equated with new taxa, i.e. Candidatus . Consideration is given to all the bacterial fish pathogens, including primary pathogens and opportunists."

In this work, experts review the latest research in the bioremediation of mercury, including the genetic engineering of bacteria and plants.

Due to the possibility that petroleum supplies will be exhausted in the next decades to come, more and more attention has been paid to the production of bacterial pl- tics including polyhydroxyalkanoates (PHA), polylactic acid (PLA), poly(butylene succinate) (PBS), biopolyethylene (PE), poly(trimethylene terephthalate) (PTT), and poly(p-phenylene) (PPP). These are well-studied polymers containing at least one monomer synthesized via bacterial transformation. Among them, PHA, PLA and PBS are well known for their biodegradability, whereas PE, PTT and PPP are probably less biodegradable or are less studied in terms of their biodegradability. Over the past years, their properties and appli- tions have been studied in detail and products have been developed. Physical and chemical modifications to reduce their cost or to improve their properties have been conducted. PHA is the only biopolyester family completely synthesized by biological means. They have been investigated by microbiologists, molecular biologists, b- chemists, chemical engineers, chemists, polymer experts, and medical researchers for many years. PHA applications as bioplastics, fine chemicals, implant biomate- als, medicines, and biofuels have been developed. Companies have been est- lished for or involved in PHA related R&D as well as large scale production. It has become clear that PHA and its related technologies form an industrial value chain in fermentation, materials, feeds, and energy to medical fields.

This book provides a detailed account of the physico-chemical properties and biological functions of the outer membrane vesicles (OMVs) of different pathogenic and non-pathogenic Gram-negative bacteria. It also includes an authentic record of the first systematic study that discovered the mechanism of OMV formation by a pathogen, "Vibrio cholerae," and proposed that the process represented a novel secretory activity of bacteria. Furthermore, the authors present clinical and laboratory data on the use of OMVs as immunogens, as effective and licensed vaccines against "Neisseria meningitidis" serogroup B infections and on the development of more effective vaccines against other human and animal pathogens including "Vibrio cholerae. "This volume thus bears witness to the emerging revolution in the field of vaccines against pathogens and closes with a discussion of open questions and future research on OMVs.

It is hardly necessary to define the concept of receptors to readers of this series, but it should be born in mind that in several instances receptors are undefined entities, whose molecular details remain to be established. On the other hand the ligand, which reco izes the receptors, has been identified and characterized in most cases. The current interest in the structure and function of biological membranes gives great expectations that in the near future we may understand the details of ligand-receptor interaction. This interaction involves two defined steps: the first, usually referred to as recognition, is followed by the second step, transduction, in which the ligand-receptor interaction is translated by the cell into a biochemical action. The present two volumes which cover prokaryotic and eukaryotic virus receptors, have been published together in order to illustrate the specificity of virus receptor recognition which appears to be a guiding principle for both bacteria and higher cells. The identification and characterization of the receptors for phages of gram-negative bacteria has to a large extent relied on the genetic techniques available for these organisms. In a similar way the availability of genetic systems has also clarified the interrelationship between animal retrovirus receptors even if the molecular structure remains to be determined. The paucity of defined genetic systems may therefore explain part of our ignorance concerning the molecular details of virus receptors on human cells and possibly also on gram positive bacteria."

Gene regulation at the transcriptional level is central to the process by which organisms convert the constant sensing of environmental changes and intracellular fluzes of metabolites to homeostatic responses. Along with the strategic guidance of M. Madan Babu authors from around the world have joined forces to review and discuss the latest research observations and current theories in this highly topical and important area of microbiology.

Carotenoids are a family of yellow to orange-red terpenoid pigments synthesized by photosynthetic organisms and many bacteria and fungi. They have beneficial health effects protecting against oxidative damage and may be responsible for the colours associated with plants and animals. In "Microbial Carotenoids from Bacteria and Microalgae: Methods and Protocols, "expert researchers in the field detail many of the most up-to-date methods which are now commonly used to study carotenoids. These include methods for the study of canthaxanthin production, construction of carotenoid reporter systems, directed evolution of carotenoid synthases, and improvement of b-carotene hydroxylase catalytic activity are described. Additionally, the book includes methods of DNA fingerprinting for the identification of carotenogenic "Dunaliella" species, ketocarotenoid biosynthesis in microalgae expressing the beta-C-4-carotene oxygenase gene, characterization of carotenogenesis genes in "Anabaena" sp., obtaining lutein from microalgal biomass, NMR-based isotopologue profiling of microbial carotenoids, and analysis of diapocarotenoids. Written in the highly successful "Methods in Molecular Biology " series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and key tips on troubleshooting and avoiding known pitfalls.

Authoritative and practical, " Microbial Carotenoids from Bacteria and Microalgae: Methods and Protocols "provides practical experimental laboratory procedures for a wide range of carotenoids producing microorganisms."

The future of agriculture strongly depends on our ability to enhance productivity without sacrificing long-term production potential. An ecologically and economically sustainable strategy is the application of microorganisms, such as the diverse bacterial species of plant growth promoting bacteria (PGPB). The use of these bio-resources for the enhancement of crop productivity is gaining worldwide importance.

""Bacteria in Agrobiology: Plant Probiotics"" discusses the current trends and future prospects of beneficial microorganisms acting as Probiotics. Topics include the application for the aboveground fitness of plants, in mountain ecosystems, in tropical and Mediterranean forests, and in muga sericulture. Further aspects are "Arabidopsis" as a model system for the diversity and complexity of plant responses, plant parasitic nematodes, nitrogen fixation and phosphorus nutrition."

This is a review of recent advances on the use of DNA microarray for diagnosing foodborne pathogens. Rapid detection and characterization of foodborne pathogens is critical for food safety. Many relevant technologies have been intensively developed to date. DNA microarray technology offers a new way to food safety involving pathogen detection and characterization. DNA microarray can be used for detection and characterization of pathogens by analyzing hybridization patterns between capture probes and nucleic acids isolated from food samples or bacteria. It allows more rapid, accurate, and cost-effective detection of pathogens compared with traditional approaches of cultivation or immuno-assays. The application of DNA microarrays to different foodborne bacteria, such as Campylobacter, Salmonella, Listeria monocytogenes, or Shiga toxin producing Escherichia coli, will improve their rapid identification and characterization of their genetic traits (e.g., antimicrobial resistance, virulence). As bacterial foodborne diseases are posing more serious threats to public healthcare, development of rapid and accurate methods for pathogen detection and characterization is critical to their proper control at the earliest time.

The first volume of Antibiotics was published in 1967 and contained a series of review papers on antibiotic actions. The editors, Drs. GOTTLIEB and SHAW, were aware of the rapid development of this field of study and provided a number of addenda in an effort to keep knowledge up to date while the book was in production. One year after the publication of Antibiotics I, this editor had a conference with Dr. KONRAD F. SPRINGER in which it became clear that another volume on actions of antibiotics would be necessary. For a variety of reasons, this was delayed until 1975 and became Antibiotics III. It did not contain addenda since it was recognized by the editors, Drs. CORCORAN and HAHN, that still another volume would have to follow and that in a moving field, such as the study of the actions of antibacterial drugs, no publication can be definitive or remain current, except for a limited period of time. The editors of Volume III grouped the contributions into sections: 1. Inter ference with nucleic acid biosyntheses, 2. Interference with protein biosynthesis, and 3. Interference with cell wall/membrane biosynthesis, specific enzyme sys tems, and those in which the mode of action was not known with certainty."

In recent years bacteriocins, especially colicins, have become widely known to molecular biologists as proteins with peculiar ways of killing bacteria. These same bacteriocins have been known for a long time to bacteriology for their unusual activity spectra and enormous variety. In this monograph I have attempted to bring together our detailed knowledge of those few bacteriocins which have already re ceived attention from molecular biologists, and our less detailed hut extensive knowledge of the variety of bacteriocins which exist. The field has been reviewed in whole or in part, by several authors FREDERICQ, 1957, 1964, 1965 (2); IVANOVICS, 1962; HAMON, 1965; REEVES, 1965 (2)]. These reviews have been very useful to the author, and readers will find further references in them, and sometimes alternative viewpoints. We have already referred to bacteriocins as proteins, and in doing so have ex cluded many more complex antibacterial agents which resemble bacteriophages or their tails. In the author's view, these phage-like particles are probably not bacterio cins, but many authors include them within the definition; the more restrictive de finition used here has meant omitting discussion of some excellent studies on what the present author would term defective bacteriophages. In the first chapter we look at the discovery of bacteriocins and an outline of their classification. With this background we can discuss in Chapters 2 to 6 the chemistry, genetics and mode of action of the more intensively studied bacteriocins."

PGPR have gained world wide importance and acceptance for agricultural benefits. These microorganisms are the potential tools for sustainable agriculture and the trend for the future. Scientific researches involve multidisciplinary approaches to understand adaptation of PGPR to the rhizosphere, mechanisms of root colonization, effects on plant physiology and growth, biofertilization, induced systemic resistance, biocontrol of plant pathogens, production of determinants etc. Biodiversity of PGPR and mechanisms of action for the different groups: diazotrophs, bacilli, pseudomonads, and rhizobia are shown. Effects of physical, chemical and biological factors on root colonization and the proteomics perspective on biocontrol and plant defence mechanism is discussed. Visualization of interactions of pathogens and biocontrol agents on plant roots using autofluorescent protein markers has provided more understanding of biocontrol process. Commercial formulations and field applications of PGPR are detailed.

Two-component systems are signaling pathways that regulate many bacterial characteristics, such as virulence, pathogenicity, symbiosis, motility, nutrient uptake, secondary metabolite production, metabolic regulation, cell division, and many more. These systems regulate physiological processes in response to environmental or cellular parameters and enable adaptation to changing conditions. They are also potential targets for anti-microbial drug design. In recent years, significant advances have been made in the understanding of the role of two-component systems, and molecular studies have uncovered basic mechanisms of signaling. In this book, expert contributors from around the world present the current knowledge on two-component systems in bacteria and critically evaluate the vast amount of exciting new information that has been brought to light in recent years. The book covers various topics, including: the structure-function analysis of two-component systems * the sensing mechanisms * essential or atypical two-component systems and signaling networks * two-component systems in stress responses * two-component systems in developmental processes * two-component systems in virulence and symbiosis. The book provides a comprehensive overview for graduate students, academic scientists, and researchers in the pharmaceutical industry. This major reference work is essential reading for everyone working on bacterial regulation or anti-microbial drug design and is a recommended volume for all microbiology libraries.

The growing body of information on bacteria pathogenic for humans, mammals and plants generated within the past ten years has shown the interesting conservation of newly identified genes that playa direct role in the pathogenic mechanism. In addition to these genes, there are also genes that confer host specificities and other traits important in pathogenesis on these pathogens. In this volume, we have organized the subject areas to best fit the concept on the way bacterial pathogens recognize, interact and invade the host, on the regulation of genes involved in virulence, on the genes involved in the elaboration of toxins and other pathogenic components such as iron sequestering proteins, and on the mechanisms of circumventing the host defense systems. These areas are divided into Sections. Section I covers the first step when the pathogen seeks its host, and Sections II through VI cover subsequent steps leading to pathogenesis while avoiding host defenses. We conclude this work with a chapter summarizing information on examples of virulence mechanisms that are highly conserved.

The future of agriculture strongly depends on our ability to enhance productivity without sacrificing long-term production potential. An ecologically and economically sustainable strategy is the application of microorganisms, such as the diverse bacterial species of plant growth promoting bacteria (PGPB). The use of these bio-resources for the enhancement of crop productivity is gaining worldwide importance.

""Bacteria in Agrobiology: Stress Management"" covers the major aspects on PGPR in amelioration of both abiotic and biotic stresses. PGPR mediated in priming of plant defense reactions, nutrient availability and management in saline and cold environment, hormonal signaling, ACC deaminase and its role in ethylene regulation under harsh conditions are suitably described.

For a long time, lactic acid bacteria have played an indispensable role in food production.
This book provides an overview and recent findings on their genetics and biochemistry as well as possible applications. The development and use of non-pathogenic lactic acid bacteria in vaccine delivery systems for mucosal immunizations are discussed. Their role in food fermentation, their use in carbohydrate modification and key systems for proteolysis and lantibiotic production are treated in detail. Further, the transformation of organic wastes into food and fertilizers is covered. The volume contains a wealth of useful information and can serve both as an introduction to the field for beginners and as a reference book.

Our knowledge of the biochemistry and biophysics of dinitrogen fixa tion has developed rapidly in the 15 years since the first N2-fixing enzyme system was successfully extracted from a bacterium. This peri od has produced a literature that now describes the N2 fixation reac tion and the nitrogenase enzyme itself in sophisticated terms, though a detailed reaction mechanism at the chemical level has not yet emerged. It is the purpose of the present monograph to present an in-depth re view, analysis, and integration of this research as is possible with a non-contributed publication and to relate this work to considera tions of N2 fixation that reach beyond the confines of the biochem ist's laboratory. The first section is directed as much toward the general science read er as toward the specialist. It covers the agricultural origins of man's interest in N2 fixation and also pertinent areas of taxonomy, physiology, and evolution. Ecological aspects of the subject include a comprehensive evaluation of the nitrogen cycle leading to a sub stantially greater estimate of the rate of global N2 fixation than previous ones. The treatment is of a survey fashion, in part to pro vide a general over-view of N2 fixation and in part to provide context for the biochemistry and biophysics that follow in the second section."

Network-based representations have become pervasive in most fields in biology. Bacterial Molecular Networks: Methods and Protocols provides authoritative descriptions of various experimental and computational methods enabling the characterization and analysis of molecular interaction networks, with a focus on bacteria. Divided into three convenient sections, this volume provides extensive coverage of various experimental and in silico approaches aiming at the characterization of network components, addresses the presentation of computational approaches to analyze the topology of molecular networks, and further introduces a variety of methods and tools enabling scientists to generate qualitative or quantitative dynamical models of molecular processes in bacteria. Written in the highly successful Methods in Molecular Biology (TM) series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, and notes on troubleshooting and avoiding known pitfalls. Authoritative and accessible, Bacterial Molecular Networks: Methods and Protocols is intended primarily for post-graduate students and researchers working in the field of experimental and computational microbiology and provides a combination of up-to-date reviews along with detailed protocols written by the developers of bioinformatics resources, such as databases and software tools.

Combining the disciplines of biological, physical and chemical science, microbial forensics has a rapidly rising profile in a world increasingly troubled by the threat of 'biocrime' and 'bioterrorism'. This valuable resource is a major addition to a body of literature reckoned to lack sufficient breadth. It presents a variety of phenotypic and trace signature methodologies associated with cultured microorganisms that, despite being genetically identical, may be characterized by differing cultural environments. One of the central challenges faced by those working in this field is the sheer diversity of potentially harmful agents, which in themselves total more than 1000 viruses, bacteria, fungi and protozoan parasites. Their numerous additional variants render the process of 'fingerprinting' biological agents notoriously difficult, especially when the limitations of genetic analysis are factored in. Attribution of crime is relatively easy through human DNA, but lacking the genetic individuation of humans and animals, microbial forensics has to complement phylogenetic techniques with chemical and physical ones. In the best case, genetic analysis in the 'biocrime' sector can exclude sources, narrow the population of possible sources and support associations with potential sources. To complement these genetic techniques, chemical and physical methods can be used to compare 'signatures' imparted to microbial samples by environments in which they are grown and processed. Collating a range of microbiological fingerprinting techniques in one volume, and covering everything from statistical analysis to laboratory protocols, this publication furthers the aim of forensic investigators who need robust and legally admissible forensic evidence to present in a courtroom.

More than 270 scientists from 33 countries attended the 6th International Conference on Plant Pathogenic Bacteria in College Park, Maryland, June 2-7, 1985. The Conference was jOintly sponsored by the International Society of Plant Pathology, Bacteria Section and by the United States Department of Agriculture, Agriculture Research Service. The Conference provided an opportunity for the presentation and discussion of recent developments in phytobacteriology. The Conference was organized into five symposia, seven discussion sessions, contributed papers and poster presentations. More than 230 contributions were presented under the following topics: ice nucleating bacteria; detection, identification, nomenclature and taxonomy of phytopathogenic bacteria; applications and impact of new biotechnologies on phytobacteriology; bacterial phytotoxins; diagnostic phytobacteriology; management of bacterial plant diseases; and molecular biology, genetics and ecology, epidemiology of phytopathogenic bacteria. In addition, special sessions focused on Agrobacterium, Erwinia, Psedomonas and fastidious prokaryotes. This reflected the broad spectrum of current research activity in phytobacteriology. Furthermore, interest in this series of conferences clearly continues to increase. Key research scientists who are currently making major advances in phytobacteriology participated in the Symposia and Discussions. One of the most significant recent changes that has occurred in the field of plant pathology generally is the dynamic growth of research in which recombinant DNA technology is being applied in basic studies on bacterial plant pathogens. Results from investigations on the crown gall bacterium have stimulated expansion of research on other bacterial systems.

Expert authors from around the world contribute comprehensive, up-to-date reviews on the current state of our knowledge of bacterial endospores.

This book is appropriate for advanced undergraduate students of micro biology and biological sciences in universities and colleges, as well as for research workers entering the field and requiring a broad contemporary view of anaerobic bacteria and associated concepts. Obligate anaerobes, together with microaerophils, are characterized by their sensitivity to oxygen. This dictates specialized laboratory methods a fact which has led to many students being less familiar with anaerobes than their distribution and importance would warrant The metabolic strategies such as methanogenesis, an oxygenic photosynthesis and diverse fermenta tive pathways which do not have equivalents in aerobic bacteria also make anaerobes worthy of attention. In these limited pages an attempt has been made to cover the varied aspects of anaerobic bacteria, and a bibliography has been included, which will allow individual topics to be pursued in greater detail. We are grateful to Mrs Winifred Webster and Mrs Hilary Holdsworth for typing the manuscript and to the Leeds University Audio Visual Service for preparing the figures. Finally, our thanks go to the students, postgradu ates and wives who read and criticized the manuscript."

This volume details recent developments in magnetotactic bacteria research. It includes reviews on the formation and organization of magnetosomes, the genes controlling magnetosome biomineralization, and new cryogenic techniques to visualize novel cytoskeleton structures. Coverage also describes potential nanobiotechnological applications of the magnetosome crystals.

w. KlingmUller Lehrstuhl fUr Genetik, Universitat Bayreuth, UniversitatsstraBe 30, 8580 Bayreuth, FRG th th On September 6 and 7 1983 the second workshop on "Azospirillum: Genetics, Physiology, Ecology" took place at the University of Bayreuth, west Germany, organized by the genetics department. There were about 50 participants, who came from German research institutions, from other European countries, from Israel, Egypt and North and South America. The first such workshop had taken place two years ago in Bayreuth too, hence the organizers could draw on the experiences then obtained. Azospirilla have, during the past ten years, found an ever increasing scientific interest, because first, these soil bacte ria carry the genetic information for binding molecular nitrogen from the air, and second, they live in close vicinity to the roots of several grain crops and forage grasses. By exploitation of these two properties, it is hoped to develop inoculation pro cedures that result in yield increases in agriculture, in par ticular in soils poor in nitrogen. The reports on the first afternoon focussed, as a result of the Bayreuth research interest, on the genetic basis and the regulation of nitrogen fixation in Azospirillum. Here, mainly by application of most modern gene technological approaches, considerable progress in the understanding of the situation has been made, and was documented in the corresponding reports."