Approximately 60% of all hospital-associated infections, over one million cases per year, are due to biofilms that have formed on indwelling medical devices. Device-related biofilm infections increase hospital stays and add over one billion dollars/year to U.S. hospitalization costs. Since the use and the types of indwelling medical devices commonly used in modern healthcare are continuously expanding, especially with an aging population, the incidence of biofilm infections will also continue to rise. The central problem with microbial biofilm infections of foreign bodies is their propensity to resist clearance by the host immune system and all antimicrobial agents tested to date. In fact, compared to their free floating, planktonic counterparts, microbes within a biofilm are 50 - 500 times more resistant to antimicrobial agents. Therefore, achieving therapeutic and non-lethal dosing regimens within the human host is impossible. The end result is a conversion from an acute infection to one that is persistent, chronic, and recurrent, most often requiring device removal in order to eliminate the infection. This text will describe the major types of device-related infections, and will explain the host, pathogen, and the unique properties of their interactions in order to gain a better understanding of these recalcitrant infections.

Env1r0nmenta1 ha5 m1cr0610109y emer9ed an extreme1y act1ve, - and 1mp0rtant area 0f re5earch dur1n9 the few year5 and ha5 cha1- 1en9ed 50me 10n9-he1d 0f F0r examp1e, the num6er5 0f c010ny-f0rm1n9 un1t5 06ta1ned 0n a9ar med1a have way5 6een a55umed t0 ref1ect the num6er5 0f 6acter1a pre5ent any 91ven 5amp1e. H0wever, n0w kn0wn that many 6acter1a the 1a60rat0ry ad0pt unu5ua1 d0rmant 5tate5 when 5u6jected t0 the nutr1ent-1- c0nd1t10n5 1ted c0mm0n many ec05y5tem5, wh1ch, turn, make5 the5e 6- ter1a t0 cu1ture. 7h15 0ur current t0 cu1ture the va5t maj0r1ty 0f6acter1a kn0wn t0 re51de natura1 env1r0nment5. Kn0- ed9e 0f the pre5ence 0f 50me 5pec1e5 a natura1 env1r0nment can 6e 0f cru- 1mp0rtance, w1th part1cu1ar1y re5pect t0 detect10n 0f path09en1c 0r t0 m0n1t0r1n9 the fate and 0f man1pu1ated 9enet1ca11y 0r9an15m5 w1th1n ec05y5tem5. 7heref0re, there ha5 6een much eff0rt 9enerated t0 dev- new and n0ve1 meth0d5 f0r detect10n, and rec0very 0f cr00r9an15m5 fr0m natura1 ha61tat5. Centra1 t0 many 0f the5e meth0d5 ha5 6een the deve10pment and ap- 0f the techn14ue5 0f 610109y m01ecu1ar t0 env1r0nmenta1 09y. 7he5e have re5u1ted d1rect 0fm1cr061a1 6a5ed 0n DNA w1th0ut the need f0r any cu1ture. 7here n0 d0u6t that w0u1d n0t have 6een w1th0ut the rev01ut10n c0mputer techn01- 09y that ha5 t0 the deve10pment 0f data6a5e5 acce55161e h19h1y 0f va5t am0unt5 0f 1nf0rmat10n. M01ecu1ar meth0d5 have 6een harne55ed and exp101ted a150 the deve10pment 0f meth0d5 that ena61e rap1d and aut0mated 0f m1cr00r9an15m5 fr0m natura1 env1r0nment5.

Research on bacterial adhesion and its significance is a major field involving many different aspects of nature and human life, such as marine science, soil and plant ecology, most importantly, the biomedical field. The adhesion ofbacteria to the food industry, and human tissue surfaces and implanted biomaterial surfaces is an important step in the patho genesis of infection. Handbook 0/ Bacterial Adhesion: Principles, Methods, and Applications is an outgrowth of the editors' own quest for information on laboratory techniques for studying bacte rial adhesion to biomaterials, bone, and other tissues and, more importantly, a response to significant needs in the research community. This book is designed to be an experimental guide for biomedical scientists, biomaterials scientists, students, laboratory technicians, or anyone who plans to conduct bacterial adhesion studies. More specifically, it is intended for all those researchers facing the chal lenge of implant infections in such devices as orthopedic prostheses, cardiovascular devices or catheters, cerebrospinal fluid shunts or extradural catheters, thoracic or abdominal catheters, portosystemic shunts or bile stents, urological catheters or stents, plastic surgical implants, oral or maxillofacial implants, contraceptive implants, or even contact lenses. It also covers research methods for the study of bacterial adhesion to tis sues such as teeth, respiratory mucosa, intestinal mucosa, and the urinary tract. In short, it constitutes a handbook for biomechanical and bioengineering researchers and students at all levels."

The new series "Microbiology Monographs" begins with two volumes on intracellular components in prokaryotes. In this second volume, "Complex Intracellular Structures in Prokaryotes," the components, labeled complex intracellular structures, encompass a multitude of important cellular functions. Continuing and newly initiated research will provide a clearer understanding of the complex intracellular structures known at present and will bring to light surprising new ones as well.

This volume details recent developments in magnetotactic bacteria research. It includes reviews on the formation and organization of magnetosomes, the genes controlling magnetosome biomineralization, and new cryogenic techniques to visualize novel cytoskeleton structures. Coverage also describes potential nanobiotechnological applications of the magnetosome crystals.

Our knowledge of the biochemistry and biophysics of dinitrogen fixa tion has developed rapidly in the 15 years since the first N2-fixing enzyme system was successfully extracted from a bacterium. This peri od has produced a literature that now describes the N2 fixation reac tion and the nitrogenase enzyme itself in sophisticated terms, though a detailed reaction mechanism at the chemical level has not yet emerged. It is the purpose of the present monograph to present an in-depth re view, analysis, and integration of this research as is possible with a non-contributed publication and to relate this work to considera tions of N2 fixation that reach beyond the confines of the biochem ist's laboratory. The first section is directed as much toward the general science read er as toward the specialist. It covers the agricultural origins of man's interest in N2 fixation and also pertinent areas of taxonomy, physiology, and evolution. Ecological aspects of the subject include a comprehensive evaluation of the nitrogen cycle leading to a sub stantially greater estimate of the rate of global N2 fixation than previous ones. The treatment is of a survey fashion, in part to pro vide a general over-view of N2 fixation and in part to provide context for the biochemistry and biophysics that follow in the second section."

w. KlingmUller Lehrstuhl fUr Genetik, Universitat Bayreuth, UniversitatsstraBe 30, 8580 Bayreuth, FRG th th On September 6 and 7 1983 the second workshop on "Azospirillum: Genetics, Physiology, Ecology" took place at the University of Bayreuth, west Germany, organized by the genetics department. There were about 50 participants, who came from German research institutions, from other European countries, from Israel, Egypt and North and South America. The first such workshop had taken place two years ago in Bayreuth too, hence the organizers could draw on the experiences then obtained. Azospirilla have, during the past ten years, found an ever increasing scientific interest, because first, these soil bacte ria carry the genetic information for binding molecular nitrogen from the air, and second, they live in close vicinity to the roots of several grain crops and forage grasses. By exploitation of these two properties, it is hoped to develop inoculation pro cedures that result in yield increases in agriculture, in par ticular in soils poor in nitrogen. The reports on the first afternoon focussed, as a result of the Bayreuth research interest, on the genetic basis and the regulation of nitrogen fixation in Azospirillum. Here, mainly by application of most modern gene technological approaches, considerable progress in the understanding of the situation has been made, and was documented in the corresponding reports."

Environmental concerns regarding continuous use of synthetic dyes saw a revival in the demand for natural dyes as natural dyes exhibit better biodegradability and generally have a higher compatibility with the environment. However, one of the limitations on the use of natural dyes or pigments is the low extraction yield factors (a few grams of pigment per kg of dried raw material). Therefore, the exploitation of other biological sources such as fungi, bacteria and cell cultures offers interesting alternative. Microbial pigments such as from bacterial origins offer the advantage in terms of production compared to pigments extracted from vegetables or animals, due to its simple cell and fast culturing technique. This book offers interesting insight into initial works carried out to demonstrate the potential use of bacterial pigment as colorant for various applications.

The sulphate-reducing bacteria (SRB) are a large group of anaerobic organisms that play an important role in many biogeochemical processes. Not only are they of early origins in the development of the biosphere, but their mechanisms of energy metabolism shed light on the limits of life processes in the absence of oxygen. They are widely distributed in nature, and are regular components of engineered systems including, for example, petroleum reservoirs and oil production facilities. SRB are currently subject to extensive genomic studies, which are yielding fresh understanding of their basic biochemical mechanisms, and aiding in the development of novel techniques for the analyses of their environmental roles. This volume provides a timely update on these important microorganisms, from basic science to applications, and will therefore serve as a valuable resource for researchers and graduate students in the fields of microbial ecology, microbial physiology, bioengineering, biogeochemistry and related areas of environmental science.

W. Klingmuller Lehrstuhl fur Genetik, Universitat Bayreuth, UniversitatsstraBe 30, 8580 Bayreuth, FRG Growth of higher plants, particularly agricultural crops, de pends on combined nitrogen. To obtain high yields, combined nitrogen has to be supplied as fertilizer. However, the che- cal production of nitrogen fertilizers is very energy consuming and costly. In underdeveloped countries there is in addition the problem of how to get such fertilizer and how to distribute it. Efforts to replace chemical nitrogen fertilizers by other means of nitrogen fertilization are therefore important. Some bacteria have the capability to use molecular nitrogen from the atmosphere. Such nitrogen is thus transformed into a bound form. Responsible for this capability is a gene group they carry, the nif genes, and an enzyme system, they produce, nitrogenase. An example for such bacteria are rhizobia, which grow in symbioses with leguminous plants, and in their root nodules bind molecular nitrogen. The host plant takes advantage of this. Less well known, but being studied with increasing intensity, are the so called Azospirillum bacteria. They too bind molecular nitrogen. But, in contrast to rhizobia, they do not form nodules on the roots of legumes, but live in loose associations with the roots of other plants, for instance maize, wheat, rice or other grain crops. By exploiting the capabilities of these bacteria it can be hoped to find a way for supplying biologically bound nit- gen to grain crops."

Genetics and Regulation of Nitrogen-Fixing Bacteria This book is the second volume of a seven-volume series, which covers all fields of research related to nitrogen fixation - from basic studies through applied aspects to environmental impacts. Volume II provides a comprehensive and detailed source of information concerning the genetics and regulation of biological nitrogen fixation in free-living prokaryotes. This preface attempts to provide the reader with some insight into how this volume originated, how it was planned, and then how it developed over the several years of its production. Once the editorial team was established, the first job was to decide which of the many free-living diazotrophs that have been subjected to genetic analysis should be included in this volume. Would we need to develop specific criteria for selection or would the organisms, in effect, select themselves? Of course, Klebsiella pneumoniae and Azotobacter vinelandii, which have served (and still serve) as the main model organisms for the genetic analysis of diazotrophy, plus some of the other bacteria described in this volume, did indeed select themselves. However, there was considerable discussion surrounding well-characterized fixing species, like Azorhizobium caulinodans and Herbaspirillum seropedicae, both of which are able to fix atmospheric N under free-living conditions.

At last, here is a graduate-level textbook that focuses on the very latest information on the molecular and cellular mechanism of several major foodborne bacterial pathogens. For the first time in the field, this book makes the link between foodborne illness and immunology. It also covers virulence genes and their regulation in the host or the food environment, pathogenicity testing models, clinical symptoms and prevention and control strategies. Unlike other textbooks this one also covers the host/parasite interaction to a level where readers have a real appreciation of the disease mechanism. It is imperative that we acquire a better understanding of foodborne pathogens. And this is what this brilliant and timely contribution to the subject offers.

There is currently increasing interest concerning the biology and disease caused by Acinetobacter species. Such interest, however, developed relatively slowly because of the necessity to clarify the confusing taxonomy of these organisms. Much work was needed to identify various species as members of this genus, to recognize their epidemiologic profile, their pathogenic role and their increasing importance as multi-antibiotic resistant organisms. In recent years improvement of genetic approaches, recognition of plasmids, integrons and chromosomal sources of resistance mechanisms aroused interest on the role of Acinetobacters in disease by many microbiologists and clinicians, especially internists and infectious disease specialists. In this regard, physicians are frequently confronted with extremely difficult therapeutic approaches for treatment and prevention of severe nosocomial infections due to multi antibiotic resistant Acinetobacter. Moreover, recent observations of community acquired infections have been reported, especially in patients with various risk factors such as immuno-deficiencies. Also, it is now becoming evident that Acinetobacter infections occur frequently in violent situations such as earthquake or war zones. The mechanisms of Acinetobacter virulence are becoming increasingly clear, providing new insights into their pathogenic role in community acquired infections. It is apparent the time is appropriate for detailed review of the increasing knowledge concerning important new information, both clinical and therapeutic, especially information concerning virulence, resistance mechanisms and typing of Acinetobacter spp. Many new findings are accumulating in almost an exponential manner since publication of previous books on this subject in 1991 and 1996.

As this book. Antibacterial Peptide Protocols, will attest, my enthusi asm for the field of antibacterial peptides is based on a conviction (and I am unashamed to say, prejudice) that these substances are in essence antibiotics produced by the host that then participate in host defense against infectious agents. Because of their capacity to exert antibiotic-like action against patho genic microorganisms (bacteria, fungi, parasites, and viruses), there is reason to believe that these agents will soon be used clinically to treat infectious diseases. In fact, in recent years, biotechnology companies have been formed for the sole purpose of developing antibacterial peptides for clinical use. It should be emphasized that antibacterial peptides will likely play a major role in the treatment of infectious diseases, particularly with the increasing prob lem of multidrug-resistant microbes and the relative dearth of new antibiotics being provided by pharmaceutical companies. The topic of this volume of Methods in Molecular Biology, the diverse methods used in research on antibacterial peptides, is thus quite timely. As the subject of antibacterial peptides develops into its own discipline (something strongly suggested by the explosion in the number of papers published over the past decade), it is essential that reliable techniques and strategies be made available not only to those of us in the field, but also to the newcomers and researchers in complementary disciplines."

PGPR have gained world wide importance and acceptance for agricultural benefits. These microorganisms are the potential tools for sustainable agriculture and the trend for the future. Scientific researches involve multidisciplinary approaches to understand adaptation of PGPR to the rhizosphere, mechanisms of root colonization, effects on plant physiology and growth, biofertilization, induced systemic resistance, biocontrol of plant pathogens, production of determinants etc. Biodiversity of PGPR and mechanisms of action for the different groups: diazotrophs, bacilli, pseudomonads, and rhizobia are shown. Effects of physical, chemical and biological factors on root colonization and the proteomics perspective on biocontrol and plant defence mechanism is discussed. Visualization of interactions of pathogens and biocontrol agents on plant roots using autofluorescent protein markers has provided more understanding of biocontrol process. Commercial formulations and field applications of PGPR are detailed.

Since the discovery of circadian rhythms in cyanobacteria in the late 1980s, the field has exploded with new information. The cyanobacterial model system for studying circadian rhythms, "Synechococcus elongatus," has allowed a detailed genetic dissection of the bacterial clock due to the methods currently available in molecular, structural, and evolutionary biology.

This book addresses multiple aspects of bacterial circadian programs: the history and background of the cyanobacteria and circadian rhythms in microorganisms, the molecular basis, structure, and evolution of the circadian clock, entrainment of the oscillator with the environment and the control of downstream processes by the clock, the demonstration of adaptive significance and the prokaryotic clock s remarkable stability, and mathematical and synthetic oscillator models for clock function.

Experts in the field provide a timely and comprehensive review and a stepping-stone for future work on this amazing group of microorganisms and timing."

This volume provides an overview of the latency strategies developed during the estimated 200 Myears long coevolution of Alpha-, Beta- and Gammaherpesvirinae and their host species. The main emphasis is on herpesviruses infecting humans. However, relevant cases if herpesviruses infecting animals are covered as well. Special emphasis is drawn on results on molecular mechanisms regulating latent promoters of herpesvirus genomes and signals and molecular pathways resulting in reactivation of latent viral genomes. To balance the volume, epigenetic mechanisms (DNA methylation, histone modification, chromatin structure) involved in cell type specific expression of growth-transformation-associated Gammaherpesvirus genes will also be discussed at length)

In the context of increasing international concern for food and environmental quality, use of Plant Growth-Promoting Rhizobacteria (PGPR) for reducing chemical inputs in agriculture is a potentially important issue. PGPR are root-colonizing bacteria that exert beneficial effects on plant growth and development, but they can be also employed in the control of plant pathogens, for enhancing the efficiency of fertilizers, and for degrading xenobiotic compounds. This book provides an update by renowned international experts on the most recent advances in the ecology of these important bacteria, the application of innovative methodologies for their study, their interaction with the host plant, and their potential application in agriculture.

An emerging theme in molecular and cellular microbiology has been the ability of many pathogens to usurp the host cell and eventually colonize the host. This interaction between bacteria and host is not unidirectional - both pathogens and host cells engage in a signalling cross-talk. Research focused on this cross-talk and discussed in this volume, reveals not only novel aspects of bacterial pathogenesis, but also key information about epithelial biology with broader implications in the prevention and treatment of infectious diseases. Written by leading researchers in this field, this book provides a valuable overview of the host-bacterial interactions that occur at mucosal surfaces including the gastrointestinal, respiratory, and urogenital tracts. It will therefore be a valuable resource for graduate students and researchers working on these systems or in the fields of molecular and cellular microbiology or infectious disease medicine.

The field of bacterial diagnostics has seen unprecedented advances in recent years. The increased need for accurate detection and identification of bacteria in human, animal, food, and environmental samples has fueled the development of new techniques. The field has seen extensive research aided by the information from bacterial genome sequencing projects. Although traditional methods of bacterial detection and identification remain in use in laboratories around the world, there is now a growing trend toward the use of nucleic ac- based diagnostics and alternative biochemically and immunologically based formats. The ultimate goal of all diagnostic tests is the accurate detection, identification, or typing of microorganisms in samples of interest. Although the resulting information is of obvious use in the areas of patient management, animal health, and quality control, it is also of use in monitoring routes of infection and outlining strategies for infection control. There is, therefore, a need to ensure that the information being provided is of the highest standard and that any new technique is capable of delivering this.

Entomopathogenic bacteria (Bacillus thuringiensis and B. sphaericus) are increasingly used as biopesticides to control larval insect populations which are either agricultural or forestry pests and to reduce those which as adults are vectors of severe human diseases. This new book, the first since 1993 to address all aspects of entomopathogenic bacteria, provides undergraduate and graduate students as well as research scientists with a complete, modern view of this important group of bacteria. The authors, chosen for their sustained contributions to the field, cover both fundamental and applied research in this area. The main topics include bacterial ecology and taxonomy, toxin diversity, activity and mode of action, regulation and environment of the genes, safety and ecotoxicology, production and field application of the bacteria, and outbreaks of resistant populations. The book concludes with the most recent data obtained on transgenic biotechnology and addresses environmental impact issues.

The discipline of microbiology that deals with an amazingly diverse group of simple organisms, such as viruses, archaea, bacteria, algae, fungi, and protozoa, is an exciting field of Science. Starting as a purely descriptive field, it has transformed into a truly experimental and interdisciplinary science inspiring a number of investigators to generate th a wealth of information on the entire gamut of microbiology. The later part of 20 century has been a golden era with molecular information coming in to unravel interesting insights ofthe microbial world. Ever since they were brought to light through a pair of ground glasses by the Dutchman, Antony van Leeuwenhoek, in later half of 17th century, they have been studied most extensively throughout the next three centuries, and are still revealing new facets of life and its functions. The interest in them, therefore, continues even in the 21 st century. Though they are simple, they provide a wealth of information on cell biology, physiology, biochemistry, ecology, and genetics and biotechnology. They, thus, constitute a model system to study a whole variety of subjects. All this provided the necessary impetus to write several valuable books on the subject of microbiology. While teaching a course of Microbial Genetics for the last 35 years at Delhi University, we strongly felt the need for authentic compiled data that could give exhaustive background information on each of the member groups that constitute the microbial world.

Over the course of the past decade, there have been remarkable advances in the study of human pathogenic fungi. These developments have taken place throughout a wide range of disciplines, and have come as the result of newly available genome sequences of pathogens such as candida albicans and other model fungi. In Candida Albicans: Methods and Protocols, expert researchers explore these exciting new insights, focusing on the study of medically important fungi and Candida spp in particular. Chapters examine critical aspects of molecular methods, providing information on reporter gene assays, transformation, gene expression in vivo, and methods for large-scale gene disruption. At the same time, the work includes in-depth descriptions of disease models of candidiasis, facts about strain identification, and guidelines on the preparation of samples for proteomic investigations and tandem affinity purification. Composed in the highly successful "Methods in Molecular Biology " series format, each chapter contains a brief introduction, step-by-step methods, a list of necessary materials, and a Notes section which shares tips on troubleshooting and avoiding known pitfalls.

Authoritative and cutting edge, Candida Albicans: Methods and Protocols is an invaluable source of methods for investigators in the exhilarating fields of medical and molecular mycology."

"Alginates: Biology and Applications" provides an overview of the state of art of alginate material properties, genetics and the molecular mechanisms underlying alginate biosynthesis as well as applications of tailor-made alginates in medicine, food and biotechnology.

Topics treated are: material properties of alginates, alginate production: precursor biosynthesis, polymerization and secretion, bacterial system for alginate uptake and degradation, enzymatic alginate modification, alginate gene regulation, role of alginate in bacterial biofilms, microbial production of alginates: physiology and process aspects, alginate-based blends and nano/microbeads, applications of alginates in food, alginate and its comonomer mannuronic acid: medical relevance as drugs.

Published nearly ten years ago, the first edition of Practical Atlas for Bacterial Identification broke new ground with the wealth of detail and breadth of information it provided. The second edition is poised to do the same. Differing fundamentally from the first edition, this book begins by introducing the concept of bacteria community intelligence as reflected in corrosion, plugging, and shifts in the quality parameters in the product whether it be water, gas, oil, or even air. It presents a new classification system for bacterial communities based upon their effect and activities, and not their composition.

The book represents a radical departure from the classical reductionist identification of bacteria dominated by genetic and biochemical analyses of separated strains. The author takes a holistic approach based on form, function, and habitat of communities (consorms) of bacteria in real environments. He uses factors related to the oxidation-reduction potential at the site where the consorm is active and the viscosity of the bound water within that consorm to position their community structures within a two-dimensional bacteriological positioning system (BPS) that then allows the functional role to be defined. This book has an overarching ability to define bacterial activities as consorms in a very effective and applied manner useful to an applied audience involved in bacterial challenges.

Organized for ease of use, the book allows readers to start with the symptom, uncover the bacterial activities, and then indentify the communities distinctly enough to allow management and control practices that minimize the damage. The broad spectrum approach, new to this edition, lumps compatible bacteria together into a relatively harmonious consortia that share a common primary purpose. It gives a big picture view of the role of bacteria not as single strains but collectively as communities and uses this information to provide key answers to common bacterial problems.