This book provides methods and techniques used in construction of global transcriptional regulatory networks in diverse systems, various layers of gene regulation and mathematical as well as computational modeling of transcriptional gene regulation. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Modeling Transcriptional Regulation: Methods and Protocols aims to provide an in depth understanding of new techniques in transcriptional gene regulation for specialized audience.

This detailed book serves as a systematic examination of the analytical methods to study the transcription factor NF- B in physiology and disease. It provides an up-to-date guidebook to navigate both conventional and highly specialized methods to detect and analyze the different signaling pathways of NF- B activation and contextualize them within organismal physiology and disease pathogenesis, using genetic and biochemical techniques and some of the most advanced computational and systems biology methods. Additionally, the volume includes several examples of approaches utilized by leading experts in the NF- B field to analyze and modulate NF- B signaling in specific physiological and disease contexts, along with some of the most promising approaches to pharmacologically target the NF- B pathway in human disease. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, NF- B Transcription Factors: Methods and Protocols is an up-to-date guide intended for both basic and translational scientists who are working in the dynamic NF- B field.

This book is the output of Anthropological Survey of India's National Project "DNA Polymorphism of Contemporary Indian Population" conducted during 2000 to 2018. The book compiles the independent and collaborative work of 49 scientific personnel. Genomics facilitate the study of genetic constitution and diversity at individual and population levels. Genomic diversity explains susceptibility, predisposition and prolongation of diseases; personalized medicine and longevity; prehistoric demographic events, such as population bottleneck, expansion, admixture and natural selection. This book highlights the heterogeneous, genetically diverse population of India. It shows how the central geographic location of India, played a crucial role in historic and pre-historic human migrations, and in peopling different continents of the world. The book describes the massive task undertaken by AnSI to unearth genomic diversity of India populations, with the use of Uni-parental DNA markers mtDNA (mitochondrial DNA) and Y -chromosome in 75 communities. The book talks about the 61 maternal and 35 paternal lineages identified through these studies. It brings forth interesting, hitherto unknown findings such as shared mutations between certain communities. This volume is a milestone in scientific research to understand biological diversity of Indian people at genomic level. It addresses the basic priority to identify different genes underlying various inborn genetic defects and diseases specific to Indian populations. This would be highly interesting to population geneticists, historians, as well as anthropologists.

Developmental biology is seemingly well understood, with development widely accepted as being a series of programmed changes through which an egg turns into an adult organism, or a seed matures into a plant. However, the picture is much more complex than that: is it all genetically controlled or does environment have an influence? Is the final adult stage the target of development and everything else just a build-up to that point? Are developmental strategies the same in plants as in animals? How do we consider development in single-celled organisms? In this concise, engaging volume, Alessandro Minelli, a leading developmental biologist, addresses these key questions. Using familiar examples and easy-to-follow arguments, he offers fresh alternatives to a number of preconceptions and stereotypes, awakening the reader to the disparity of developmental phenomena across all main branches of the tree of life.

'Heredity' is split into six chapters, including Passing It On; Reinventing the Past; Mendel and His Peas; The Forms of Dominance; The Animal Body Plan; and Genes and Disease. It contains a glossary, sidebars, further research and internet sources.

This book provides in-depth explorations of genetic cloning, including the history of cloning and the types of artificial cloning for both plants and animals, with fascinating examples. It also explains the possibility of using the gene therapy to cure diseases.

Quantitative modeling of Mendelian genetics Quantitative Genetics with Special Reference to Plant and Animal Breeding provides authoritative guidance on improving genetic material in breeding programs through the application of Mendelian genetics. Beginning with a brief background on genetic modeling and breeding programs, the book compares breeding procedures and selection approaches while offering expert guidance on mathematical and Mendelian representation of various schema. Highly detailed and practically-focused with clear guidance on methods and calculations, this guide provides invaluable reference for the design of breeding programs in the laboratory or agricultural industry.

Focusing on the roles of different segments of DNA, Statistics in Human Genetics and Molecular Biology provides a basic understanding of problems arising in the analysis of genetics and genomics. It presents statistical applications in genetic mapping, DNA/protein sequence alignment, and analyses of gene expression data from microarray experiments.

The text introduces a diverse set of problems and a number of approaches that have been used to address these problems. It discusses basic molecular biology and likelihood-based statistics, along with physical mapping, markers, linkage analysis, parametric and nonparametric linkage, sequence alignment, and feature recognition. The text illustrates the use of methods that are widespread among researchers who analyze genomic data, such as hidden Markov models and the extreme value distribution. It also covers differential gene expression detection as well as classification and cluster analysis using gene expression data sets.

Ideal for graduate students in statistics, biostatistics, computer science, and related fields in applied mathematics, this text presents various approaches to help students solve problems at the interface of these areas.

'DNA and Genes' is split into six chapters, including You Are Your DNA; Discovering DNA; DNA is Life; The Language of the Genes; DNA is Change; and DNA Now and When. It contains a glossary, sidebars, further research and internet sources.

A cutting-edge examination of what it means to be human and to have a 'self' in the face of new scientific developments in genetic editing, cloning and neural downloading. After seeing his own cells used to grow clumps of new neurons - essentially mini-brains - Philip Ball begins to examine the concepts of identity and consciousness. Delving into humanity's deep evolutionary past to look at how complex creatures like us emerged from single-celled life, he offers a new perspective on how humans think about ourselves. In an age when we are increasingly encouraged to regard the 'self' as an abstract sequence of genetic information, or as a pattern of neural activity that might be 'downloaded' to a computer, he return us to the body - to flesh and blood - and anchors a conception of personhood in this unique and ephemeral mortal coil. How to Build a Human brings us back to ourselves - but in doing so, it challenges old preconceptions and values. It asks us to rethink how we exist in the world.

This book reviews a novel and exciting field of cellular and molecular biology called epitranscriptomics, which focuses on changes in an organism's cells resulting from the posttranscriptional modification of cellular RNA. RNA-binding proteins (RBPs) play a crucial role in these posttranscriptional modifications and also support several cellular processes necessary for maintaining RNA homeostasis. Exploring the mechanisms underlying RNA modifications and RBP function is an emerging area of biomedical research, taking the study of gene regulation a step beyond epigenetics. This book reveals that the RNA molecule is not just an information-carrying molecule with some secondary structures. Accordingly, how RNA is modified, regulated, packaged, and controlled is an important aspect. Leading experts address questions such as where the over 170 distinct posttranscriptional RNA modifications are located on the genome, what percentage of mRNAs and noncoding RNAs these modifications include, and how an RNA modification impacts a person's biology. In closing, the book reviews the role of RNA modifications and RBPs in a variety of diseases and their pathogenesis. Addressing some of the most exciting challenges in epitranscriptomics, this book provides a valuable and engaging resource for researchers in academia and industry studying the phenomena of RNA modification.

This second edition volume expands on the previous edition with discussions of recently developed techniques that use RNA scaffolds as molecular tools. These latest methods are used in the fields of molecular biology, cellular biology, nanotechnology, and structural biology. The chapters in this book cover topics such as RNA footprinting using small chemical reagents; using tRNA scaffolds to assist RNA crystallization; identification of RNA-binding proteins associated to RNA structural elements; and synthetic biology medicine and bacteria-based cancer therapeutics. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and comprehensive, RNA Scaffolds: Methods and Protocols, Second Edition is a valuable resource that explores the fascinating uses of RNA in these different areas, and will inspire experts and novice researchers to further study this developing field.

Illustrates the Complex Biochemical Relations that Permit Life to Exist It can be argued that the dawn of the 21st century has emerged as the age focused on molecular biology, which includes all the regulatory mechanisms that make cellular biochemical reaction pathways stable and life possible. For biomedical engineers, this concept is essential to their chosen profession. Introduction to Molecular Biology, Genomics, and Proteomics for Biomedical Engineers hones in on the specialized organic molecules in living organisms and how they interact and react. The book's sound approach to this intricately complex field makes it an exceptional resource for further exploration into the biochemistry, molecular biology, and genomics fields. It is also beneficial for electrical, chemical, and civil engineers as well as biophysicists with an interest in modeling living systems. This seminal reference includes many helpful tools for self study, including- 143 illustrations, 32 in color, to bolster understanding of complex biochemical relations 20 tables for quick access to precise data 100 key equations Challenging self-study problems within each chapter Conveys Human Progress in the Manipulation of Genomes at the Molecular Level In response to growing global interest in biotechnology, this valuable text sheds light on the evolutionary theories and future trends in genetic medicine and stem cell research. It provides a broader knowledge base on life-permitting complexities, illustrates how to model them quantitatively, and demonstrates how to manipulate them in genomic-based medicine and genetic engineering. Consequently, this book allows for a greater appreciation among of the incredible complexity of the biochemica

This detailed edition reflects the significant new findings in the components of permeability barriers and how they work in different tissues with a collection of cutting-edge techniques. Chapters explore the formation, maintenance, regulation, and dynamics of permeability barriers in an effort to push the boundaries of the field. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and up-to-date, Permeability Barrier: Methods and Protocols, Second Edition serves as an invaluable guide for both experts but novices in the stem cell field and other related areas of research.

This volume presents readers with up-to-date protocols, bioinformatics toolkits, and reference material for understanding circRNAs in plants. The chapters in this book summarize the concepts and techniques for prediction/identification, validation, and analysis of plant circRNAs and their regulatory targets. Some of the topics covered are procedures for circRNA identification and characterization; strategies for circRNA generation; next generation sequencing (NGS) technologies and circRNAs' research; and bioinformatics tools and pipelines for the analysis of circRNA-miRNA-mRNA regulatory networks. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Plant Circular RNAs: Methods and Protocols is an important reference for any researcher looking to explore and apply the latest developments made in this field.

A comprehensive and groundbreaking collection of ideas for plant improvement Most of the world's supply of legumes is cultivated under adverse conditions that make this commercially important crop susceptible to the vagaries of nature and damaging stresses. Genetic manipulation has become a proven way for cultivators to battle these problems; but there has been a lack of reliable information on the practical aspects of this promising method. Handbook of New Technologies for Genetic Improvement of Legumes fills this void by providing a vast array of groundbreaking essays from some of the discipline's most renowned experts. This unique collection is your single source for not only the most up-to-date accounts of genetic manipulation employed today, but also ideas for realistic and practical uses. Comprehensive in its approach, Handbook of New Technologies for Genetic Improvement of Legumes presents the latest research on all aspects of genetically modified legume production. With contributions from over 90 international experts, this eye-opening resource offers an in-depth exploration of key topics such as, genetic transformation technology, suppression-subtractive hybridization, c-DNA micro arrays, molecular mapping, tagging regulatory elements, and real-time PCR. Additionally, this text features a wealth of detailed references and informative tables to clearly explain pertinent data. Chapters in Handbook of New Technologies for Genetic Improvement of Legumes detail both family- and species-specific topics such as: * agrobacterium-mediated transformation in trifolium and medicago * biotechnological approaches to soybean improvement * transgenic approaches for enhancement of vitamin E * particle bombardment and SAAT approaches * agrobacterium tumefaciens-mediated transformation and in vitro regeneration * plant regeneration via organogenesis, somatic embryogenesis, and protoplast culture * somaclonal variation and its exploitation * cotyledonary node and embryo axes as explants * in planta transformation of pisum sativum l. * de novo regeneration protocol * reverse genetic approaches in medicago truncatula * tagging regulatory elements in plants * gene expression analysis with DNA array technology * advent of diverse DNA markers to decipher genome sequence polymorphism * defensins in legumes * legume-nematode interaction with reference to model legumes * and much, much more! Handbook of New Technologies for Genetic Improvement of Legumes is an invaluable resource for researchers and educators in the area of plant genetic manipulation and plant biotechnology as well as scientists, educators, and graduate students focusing on the genetic manipulation of legumes.

This detailed book brings together a new set of protocols to arm cell biologists with techniques that are currently being used in a number of well-established laboratories around the world. The contents represent the great strides made in the field of cell-cell communications with respect to the identification and characterization of key components of the communication apparatus, assembly and maintenance of the communications structures, and concomitantly their roles in not only tissue formation and maintenance but also regeneration and repair. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective chapters, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Stem Cell Renewal and Cell-Cell Communication: Methods and Protocols, Second Edition serves as an ideal guide for experts and newcomers alike seeking to increase our understanding of the crucial biological and physiological roles of cell-cell communications in tissue function and organismal integrity.

Increasing world population, unpredictable climate and various kind of biotic and abiotic stresses necessitate the sustainable increase in crop production through developing improved cultivars possessing enhanced genetic resilience against all odds. An exploration of these challenges and near possible solution to improve yield is addressed in this book. It comprehensively and coherently reviews the application of various aspect of rapidly growing omics technology including genomics, proteomics, transcriptomics and metabolomics for crop development. It provides detailed examination of how omics can help crop science and introduces the benefits of using these technologies to enhance crop production, resistance and other values. It also provides platform to ponder upon the integrative approach of omics to deal with complex biological problems. The book highlights crop improvement such as yield enhancement, biotic and abiotic resistance, genetic modification, bioremediation, food security etc. It explores how the different omics technology independently and collectively would be used to improve the quantitative and qualitative traits of crop plants. The book is useful for graduate and post-graduate students of life science including researchers who are keen to know about the application of omics technologies in the different area of plant science. This book is also an asset to the modern plant breeders, and agriculture biotechnologist.

The Vets Turn Pale. . . George, a male calico, was a genetic anomaly, a manifestation of something that isn't supposed to happen, a creature so rare that even most veterinarians have never seen one. His curious existence sparked Laura Gould's long search through the archives of genetics to unearth the charming and valiant roles played by early cat geneticists, as well as cats themselves, in the study of genes and how they work. For everyone with an interest in cats and cat breeding, this is an unforgettable and often hilarious account of the intersecting lives of cats and geneticists. The field of genetics has exploded since 1992, when the first edition of Cats Are Not Peas was completed. Thus a lengthy Addendum is included in this new edition, providing the reader with the terminology and concepts needed to understand two burgeoning new areas in which cats have again had significant roles to play---the sequencing of genomes and the production of clones. These descriptions allow you to view with increasing wonder the world around you and to think seriously about whether you would like to have your personal genome mapped or your cat cloned, both of which are now possible (if you can afford it).

Animal Cell Technology will provide an insight into biological and engineering concepts related to mammalian and insect cell technology, as well as provide an overview of the applications of animal cell technology. The interest in this area of science has grown significantly in recent years so this book will be suitable for undergraduates who wish to learn from the basics upwards, and for postgraduates and scientists in the expanding biopharmaceutical industry who wish to build upon their existing knowledge base. The authors of the chapters are leaders of internationally-recognized animal cell culture research and have extensive experience in the areas covered in their respective chapters.

First published in 1998, John Gillespie's brilliant primer Population Genetics: A Concise Guide has been updated with new topics that have emerged . Keeping the concise format that made the book such a popular success, new sections have been added on molecular evolution, genetic drift, the stationary distribution, two-locus dynamics, and the evolution of selfing in nonrandom mating. Writing with verve, Gillespie explains both the theories and empirical evidence. The result is an intriguing revelation of how genes can be quantified and explained at the level of population. Whether one works on Drosophila in a laboratory setting or studies free-ranging populations, you will find that this book is an indispensable addition to your library.

This summary of the results of chromosomal analysis of various groups of parasitic wasps will be essential reading for those working in the field. It is the second edition of a monograph that was first published in Russian, and has been substantially updated with new data, conclusions and references.

The goal of this ground-breaking work is to document the author's study of the karyotype structure and chromosomal evolution of parasitic Hymenoptera. It also interprets the results obtained, from both routine and differential chromosome staining, for systematic and phylogenetic purposes.

Despite the huge importance of parasitic wasps, many problems of their taxonomy remain insufficiently studied. This is a situation that needs rectifying, as Hymenoptera are one of the largest and most taxonomically complicated groups of insects and they play a very important role in food chains as parasitoids of the overwhelming majority of insects and other arthropods. Parasitic wasps attack many pests of agriculture and forestry as well as certain beneficial insects. In addition, some secondarily phytophagous Hymenoptera damage certain cultivated plants.

The renowned entomologist and author of this volume, Vladimir Gokhman, has himself developed a particular technique for obtaining chromosomal preparations from adult parasitic wasps. This allowed the inclusion of a wide range of those insects into the study.

The karyotypic features of the majority of superfamilies and families as well as many lower taxa of parasitic Hymenoptera are listed, while the plesiomorphic and apomorphic character states of chromosome sets of parasitic wasps are revealed.

The structural features of karyotypes used for identifying and discriminating sibling species and similar forms are shown, as are the data on chromosome sets of about 400 species of parasitic Hymenoptera (including more than 200 micrographs). Also included is a comprehensive phylogenetic and taxonomic analysis of karyotypic information.

This book is unique because it demonstrates a range of karyotypic data for an insect group that seemed unattainable in this respect not so long ago. Rich in new facts, techniques and ideas, it will be of use to all those interested in karyology and Hymenoptera.

The mapping of the human genome means it is now feasible to conduct large genome-wide linkage and association studies for complex behaviors and diseases. This means that the focus of research is now to identify the genes responsible for such conditions. Identifying these genes will help readers to understand why some people are prone to mental and physical disease, improve early diagnosis, and eventually could lead to treatments.Statistical Genetics is an advanced textbook focusing on conducting genetic linkage and association analysis in the post-genomic era. Starting with an introductory section on statistics and quantitative genetics, it covers both established and new methodologies, providing the genetic and statistical theory on which they are based. Each chapter is written by leading researchers, who give the reader the benefit of their experience with worked examples, study design, and sources of error. The text can be used in conjunction with an associated website that provides supplementary material and links to downloadable software.

Volume 3 covers recent research with expanded coverage on this important area of remediation. Mycoremediation is the form of bioremediation in which fungi-based technology is used to decontaminate the environment. Fungi are among the primary saprotrophic organisms in an ecosystem, as they are efficient in the decomposition of organic matter. Wood-decay fungi, especially white rot, secretes extracellular enzymes and acids that break down lignin and cellulose. Fungi have been proven to be a very cost-effective and environmentally-friendly way for helping to remove a wide array of toxins from damaged environments or wastewater. These toxins include heavy metals, persistent organic pollutants, textile dyes, leather tanning industry chemicals and wastewater, petroleum fuels, polycyclic aromatic hydrocarbon, pharmaceuticals and personal care products, pesticides and herbicides, in land, fresh water and marine environments. Bioremediation of toxic organics by fungi is the most sustainable and green route for cleanup of contaminated sites and we discuss the multiple modes employed by fungi for detoxification of different toxic and recalcitrant compounds including prominent fungal enzymes viz., catalases, general lipase, laccases, peroxidases and sometimes intracellular enzymes, especially the cyrochrome P450 monooxygeneses. Fungi play an important role in the biogeochemical cycling of manganese and other redox-active metals, which is related to their ability to survive radiation and other oxidative challenges. This book covers recent research with more detail on the various types of fungi and associated fungal processes used to clean up wastes and wastewaters in contaminated environments, and discusses their potential for environmental applications.