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Books > Science & Mathematics > Physics > Applied physics & special topics > Biophysics
The prediction of the conformation of proteins has developed from an intellectual exercise into a serious practical endeavor that has great promise to yield new stable enzymes, products of pharmacological significance, and catalysts of great potential. With the application of predic tion gaining momentum in various fields, such as enzymology and immunology, it was deemed time that a volume be published to make available a thorough evaluation of present methods, for researchers in this field to expound fully the virtues of various algorithms, to open the field to a wider audience, and to offer the scientific public an opportunity to examine carefully its successes and failures. In this manner the practitioners of the art could better evaluate the tools and the output so that their expectations and applications could be more realistic. The editor has assembled chapters by many of the main contributors to this area and simultaneously placed their programs at three national resources so that they are readily available to those who wish to apply them to their personal interests. These algorithms, written by their originators, when utilized on pes or larger computers, can instantaneously take a primary amino acid sequence and produce a two-or three-dimensional artistic image that gives satisfaction to one's esthetic sensibilities and food for thought concerning the structure and function of proteins. It is in this spirit that this volume was envisaged."
Nobody can know everything. For the successful application of techniques based on nuclear magnetic resonance to clinical problems, it is a vital necessity that individuals with widely different skills should learn a little of each others' trades by co-operation and communication. Ernest Cady has long proved himself a master of these arts to his colleagues at University College London, and by writing this excellent book he extends his experience to a wide circle of readers. Although the nuclear magnetic resonance (NMR) phenomenon had been predicted theoretically (and to some degree demonstrated experimentally) appreciably earlier, it required the advances in electronics that took place during World War II to turn NMR into a practical technique, as demonstrated independently in 1946 by Bloch and Purcell. Since then, NMR has been used extensively and increasingly by chemists and physicists. In the 1970s the first applications of NMR to animal organs yielded important advances in our knowledge of the biochemical and physiological processes as they occur in genuinely intact tissues. They showed incidentally that some conventional techniques introduce significant artifacts.
The First International School on "Electromagnetic Fields and Biomembranes" took place in Pleven, Bulgaria on 6-12 October 1986. It was designed as an advanced course through a collaboration of the Biological Faculty of Sofia University and the Council of the Bioelectrochemical Society. In an advanced course the lecturers are specialized in particular areas, and the students are usually specialists in related areas. We have captured the expertise of both groups of participants in this volume. The longer papers prepared by the lecturers are joined with the shorter papers based on the posters presented by the "students" to provide a summary of the school as well as an indication of current research directions in the field. The course was designed to provide the latest information about biomembrane structure and function, covering the properties of both the lipid matrix and the recently characterized proteins that function as specialized channels and receptors. Real membranes and various models were covered, with an emphasis on understanding their mechanisms of interaction with various exogenous stimuli (e.g., electric, magnetic, light, etc.). Several practical applications of this information (e.g., electroporation, electro-fusion) were also presented with indications of the possibilities for new developments in biotechnology. The mixture of basic science with practical applications, together with the int rmingling of lecturers and students from many different countries produced a stimulating atmosphere and effective teaching. We hope that this volume will transmit some of this atmosphere.
The structures of living tissues are continually changing due to growth and response to the tissue environment, including the mechanical environment. "Tissue Mechanics" is an in-depth look at the mechanics of tissues. "Tissue Mechanics" describes the nature of the composite components of a tissue, the cellular processes that produce these constituents, the assembly of the constituents into a hierarchical structure, and the behavior of the tissue's composite structure in the adaptation to its mechanical environment. Organized as a textbook for the student needing to acquire the core competencies, "Tissue Mechanics" will meet the demands of advanced undergraduate or graduate coursework in Biomedical Engineering, as well as, Chemical, Civil, and Mechanical Engineering. Key features: Detailed Illustrations Example problems, including problems at the end of sections A separate solutions manual available for course instructors A website (http: //tissue-mechanics.com/) that has been established to provide supplemental material for the book, including downloadable additional chapters on specific tissues, downloadable PowerPoint presentations of all the book's chapters, and additional exercises and examples for the existing chapters. About the Authors: Stephen C. Cowin is a City University of New York Distinguished Professor, Departments of Biomedical and Mechanical Engineering, City College of the City University of New York and also an Adjunct Professor of Orthopaedics, at the Mt. Sinai School of Medicine in New York, New York. In 1985 he received the Society of Tulane Engineers and Lee H. Johnson Award for Teaching Excellence and a recipient of the European Society of Biomechanics Research Award in 1994. In 1999 he received the H. R. Lissner medal of the ASME for contributions to biomedical engineering. In 2004 he was elected to the National Academy of Engineering (NAE) and he also received the Maurice A. Biot medal of the American Society of Civil Engineers (ASCE). Stephen B. Doty is a Senior Scientist at Hospital for Special Surgery, New York, New York and Adjunct Professor, School of Dental and Oral Surgery, Columbia University, New York, NY. He has over 100 publications in the field of anatomy, developmental biology, and the physiology of skeletal and connective tissues. His honors include several commendations for participation in the Russian/NASA spaceflights, the Spacelab Life Science NASA spaceflights, and numerous Shuttle missions that studied the influence of spaceflight on skeletal physiology. He presently is on the scientific advisory board of the National Space Biomedical Research Institute, Houston, Texas."
The NATO Advanced Study Institute on Biomechanics of Active Movement and Division of Cells was held September 19-29, 1993 in Istanbul and the Proceedings are presented in this volume. Sixty-eight scientists from sixteen countries attended. Prof. J. Bereiter-Hahn of Goethe-Universitat, Frankfurt, Germany, Prof. A.K. Harris of the University of North Carolina, Chapel Hill, USA, Prof. R.M. Nerem of Georgia Institute of Technology, Atlanta, USA and Prof. R. Skalak of the University of California, San Diego, USA were the members of the International Organizing Committee. As the Scientific Director of the Institute, I wish to express my sincere appreciation for their assistance without which the Institute could not have taken place. This Institute is the third one of the meetings which are now called "the NATO Istanbul Meetings on Cytomechanics". The first one was the NATO Advanced Research Workshop on Biomechanics of Cell Division which was held October 12-17, 1986 in Istanbul. The Proceedings were published as NATO ASI Series A Life Sciences Vol. 132 by Plenum Press in 1987. The second one was the NATO Advanced Study Institute on Biomechanics of Active Movement and Deformation of Cells which was held September 3-13, 1989 in Istanbul. The Proceedings were published as NATO ASI Series H : Cell Biology Vol. 42 by Springer-Verlag in 1990.
Some of the best vision scientists in the world in their respective fields have contributed to chapters in this book. They have expertise in a wide variety of fields, including bioengineering, basic and clinical visual science, medicine, neurophysiology, optometry, and psychology. Their combined efforts have resulted in a high quality book that covers modeling and quantitative analysis of optical, neurosensory, oculomotor, perceptual and clinical systems. It includes only those techniques and models that have such fundamentally strong physiological, control system, and perceptual bases that they will serve as foundations for models and analysis techniques in the future. The book is aimed first towards seniors and beginning graduate students in biomedical engineering, neurophysiology, optometry, and psychology, who will gain a broad understanding of quantitative analysis of the visual system. In addition, it has sufficient depth in each area to be useful as an updated reference and tutorial for graduate and post-doctoral students, as well as general vision scientists.
One of the great intellectual challenges for the next few decades is the question of brain organization. What is the basic mechanism for storage of memory? What are the processes that serve as the interphase between the basically chemical processes of the body and the very specific and nonstatistical operations in the brain? Above all, how is concept formation achieved in the human brain? I wonder whether the spirit of the physics that will be involved in these studies will not be akin to that which moved the founders of the "rational foundation of thermodynamics". C. N. Yang! 10 The human brain is said to have roughly 10 neurons connected through about 14 10 synapses. Each neuron is itself a complex device which compares and integrates incoming electrical signals and relays a nonlinear response to other neurons. The brain certainly exceeds in complexity any system which physicists have studied in the past. Nevertheless, there do exist many analogies of the brain to simpler physical systems. We have witnessed during the last decade some surprising contributions of physics to the study of the brain. The most significant parallel between biological brains and many physical systems is that both are made of many tightly interacting components.
Ithasbeenstatedthatourknowledgedoublesevery20years, butthatmaybe an understatement when considering the Life Sciences. A series of discoveries and inventions have propelled our knowledge from the recognition that DNA isthegeneticmaterialtoabasicmolecularunderstandingofourselvesandthe living world around us in less than 50 years. Crucial to this rapid progress was thediscoveryofthedouble-helicalstructureofDNA, whichlaidthefoundation forallhybridizationbasedtechnologies. Thediscoveriesofrestrictionenzymes, ligases, polymerases, combined with key innovations in DNA synthesis and sequencing ushered in the era of biotechnologyas a new science with profound sociological and economic implications that are likely to have a dominating in?uence on the development of our society during this century. Given the process by which science builds on prior knowledge, it is perhaps unfair to single out a few inventions and credit them with having contributed most to thisavalancheofknowledge. Yet, therearesurelysomethatwillberecognized as having had a more profound impact than others, not just in the furthering of our scienti?c knowledge, but by leveraging commercial applications that provide a tangible return to our society. The now famous Polymerase Chain Reaction, or PCR, is surely one of those, as it has uniquely catalyzed molecular biology during the past 20 years, and continues to have a signi?cant impact on all areas that involve nucleic acids, ranging from molecular pathology to forensics. Ten years ago micro- ray technology emerged as a new and powerful tool to study nucleic acid - quences in a highly multiplexed manner, and has since found equally exciting and useful applications in the study of proteins, metabolites, toxins, viruses, whole cells and even tissu
Biophysics is the science of physical principles underlying the "phenomenon of life" on all levels of organization. This book begins by explaining molecular and ionic interactions, movements, excitation and energy transfer, and the self-organization of supramolecular structures. Then the biological organism is introduced as a non-equilibrium system. Finally, system analyses are discussed as well as environmental biophysics, ecological interactions, growth, differentiation, and evolution. A growing number of applications in biotechnology are based on these biophysical concepts.
This book contains all invited contributions of an interdisciplinary workshop of the UNESCO working group on systems analysis of the European and North American region entitled "Stochastic Phenomena and Chaotic Behaviour in Complex Systems." The meeting was held at Hotel Winterthalerhof in Flattnitz, Karnten, Austria from June 6-10, 1983. This workshop brought together some 20 mathematicians, physicists, chemists, biologists, psychologists and economists from different European and American coun tries who share a common interest in the dynamics of complex systems and their ana lysis by mathematical techniques. The workshop in Flattnitz continued a series of meetings of the UNESCO working group on systems analysis which started in 1977 in Bucharest and was continued in Cambridge, U.K., 1981 and in Lyon, 1982. The title of the meeting was chosen in order to focus on one of the current problems of the analysis of dynamical systems. A deeper understanding of the vari ous sources of stochasticity is of primary importance for the interpretation of experimental observations. Chaotic dynamics plays a central role since it intro duces a stochastic element into deterministic systems."
This workshop was the second of this series held on the island of santorini in the Cycladic Sea. The first one ("Mechanism of Action of the Nicotinic Acetylcholine Receptor", NATO ASI Se ries H, vol. 10) took place in May 1986 and focused on what was at the time the best studied of all neuroreceptors. This second one, held only two years later, demonstrates the im mense progress achieved since then in the field of neurorecep tors and ion channels. Molecular cloning techniques have now made available the primary structures of a whole array of ion channel proteins, and this in turn has shed light on some gen eral principles of the structure-function relationships of these central elements of intercellular communication. The purpose of this workshop was to explore the common ele ments in gene and protein structure of already cloned ion channel proteins, and to assess the status of other cloning projects in progress. It explicitly focused on very recently published and unpublished results. All participants kept to these goals thereby demonstrating the very value of such work shops for the progress of science.
GeoffGoldspink and I edited a book, Mechanics and Energetics of Animal Locomotion, which was published by Chapman and Hall in 1977. It dealt at an advanced level with all aspects of animal locomotion, emphasizing particularly the topics of then current research. Since then there have been more elementary books on the subject, including my own Locomotion of Animals (Blackie 1982), and specialized books on such topics as swimming and flight, but (despite very substantial progress in research) there has been no advanced book covering the whole range of animal locomotion. It seemed to me and to Professor Gilles (editor ofthis series) that a new book was needed. Plainly, a book of this length cannot contain everything that is known about animal locomotion. We have not attempted to make it encyclopedic, but have tried to show where the study of animal locomotion stands now, and where it is going. Older books remain useful as sources of long-established information.
Physics in Biology and Medicine, Fourth Edition, covers topics in physics as they apply to the life sciences, specifically medicine, physiology, nursing and other applied health fields. This is a concise introductory paperback that provides practical techniques for applying knowledge of physics to the study of living systems and presents material in a straightforward manner requiring very little background in physics or biology. Applicable courses are Biophysics and Applied Physics. This new edition discusses biological systems that can be analyzed quantitatively, and how advances in the life sciences have been aided by the knowledge of physical or engineering analysis techniques. The volume is organized into 18 chapters encompassing thermodynamics, electricity, optics, sound, solid mechanics, fluid mechanics, and atomic and nuclear physics. Each chapter provides a brief review of the background physics before focusing on the applications of physics to biology and medicine. Topics range from the role of diffusion in the functioning of cells to the effect of surface tension on the growth of plants in soil and the conduction of impulses along the nervous system. Each section contains problems that explore and expand some of the concepts. The text includes many figures, examples and illustrative problems and appendices which provide convenient access to the most important concepts of mechanics, electricity, and optics in the body. Physics in Biology and Medicine will be a valuable resource for students and professors of physics, biology, and medicine, as well as for applied health workers.
Constructional morphology explains features of organisms from a constructional and functional point of view. By means of physical analysis it explains the operational aspects of organic structures - how they can perform the activities organisms are expected to fulfil in order to survive in their environment. Constructional morphology also explains options and constraints during the evolution determined by internal constructional needs, ontogenetic demands, inherited organizational preconditions and environmental clues.
Presented with a choice of evils, most would prefer to be blinded rather than to be unable to move, immobilized in the late stages of Parkinson's disease. Yet in everyday life, as in Neuroscience, vision holds the centre of the stage. The conscious psyche watches a private TV show all day long, while the motor system is left to get on with it "out of sight and out of mind. " Motor skills are worshipped at all levels of society, whether in golf, tennis, soccer, athletics or in musical performance; meanwhile the subconscious machinery is ignored. But scientifically there is steady advance on a wide front, as we are reminded here, from the reversal of the reflexes of the stick insects to the site of motor learning in the human cerebral cortex. As in the rest of Physiology, evolution has preserved that which has already worked well; thus general principles can often be best discerned in lower animals. No one scientist can be personally involved at all levels of analysis, but especially for the motor system a narrow view is doomed from the outset. Interaction is all; the spinal cord has surrendered its autonomy to the brain, but the brain can only control the limbs by talking to the spinal cord in a language that it can understand, determined by its pre-existing circuitry; and both receive a continuous stream of feedback from the periphery.
Computational techniques have become an indispensable part of Molecular Biology, Biochemistry, and Molecular Design. In conjunction with refined experimental methods and powerful hardware, they enable us to analyze and visualize biomolecular structures, simulate their motions and to a variable degree understand their physicochemical properties and function. In addition, they provide essentially the only way to analyze and correlate the astronomical amounts of experimental sequence and structural data accumulating in international databases. We have good reasons to believe that further advances in this area will eventually enable us to predict with sufficient accuracy many structural and functional properties of fairly large biomolecules, given their sequence and specified environmental conditions. However, it is also important to realize that in achieving this goal, we encounter several serious problems of conceptual and methodological nature, the solution of which requires new approaches and algorithms. For example, we need better force fields, more efficient optimization routines, an adequate description of electrostatics and hydration, reliable methods to compute free energies, and ways to extent the length of molecular dynamics simulations by several orders of magnitude.
Lasers in Dermatology presents an excellent and complete survey of the numerous applications of lasers in dermatological therapy and research, the fundamentals of laser-skin interaction, and the various laser sources and tools in use. A comprehensive outlook to new instrumentation, such as pulsed lasers of ultraviolet and infrared wavelengths, completes this up-to-date overview, which is indispensable not only to practitioners and clinical researchers in dermatology but also to engineers and laser physicists in biomedicine.
The papers published in this Volume are the fruits of a symposium held in Regensburg in April 1987. The meeting was held to com memorate two most significant events in the development of com pound eye research. In chronological order these are firstly, Sigmund Exner's seminal monograph on the physiology of compound eyes of crustaceans and insects, which was first published in Vienna in 1891, and is now shortly to appear for the first time in the English translation Exner, S. (1989) The Physiology of the Compound Eyes of Insects and Crustaceans. Springer Berlin Heidelberg New York Tokyo]. Secondly, the meeting was also held in honour of Professor Hansjochem Autrum's 80th birthday. Professor Autrum, who is justly acknowledged as one of the pioneers of modern compound eye research, attended the meeting as the guest of honour. In keeping with these historical occasions, it has been our intention in this volume to present a comprehensive collection of short reviews covering the major aspects of compound eye research. Whilst the most up-to-date developments have been included in every field from optics, through photochemistry, phototransduction, integrative processes and behavior, an attempt has also been made to provide a historical perspective."
Microdosimetry and Its Applications is an advanced textbook presenting the fundamental concepts and numerical aspects of the absorption of energy by matter exposed to ionizing radiation. It is the only comprehensive work on the subject that can be considered definitive. It provides a deeper understanding of the initial phase of the interaction of ionizing radiation with matter, especially biological matter, and its consequences.
Disintegration of kidney and gall stones by intense laser radiation is becoming increasingly important as a complementary technique to extracorporeal shockwave treatment. This book gives for the first time a complete overview of laser lithotripsy combining a critical comparison of the methods and a thorough evaluation of instrumental developments and clinical applications. Readers from the medical as well as from the engineering side will find it a stimulating source of information on all aspects of laser-stone interaction.
This volume - like the NATO Advanced Research Workshop on which it is based - addresses the fundamental science that contributes to our understanding of the potential risks from ecological terrorism, i.e. dirty bombs, atomic explosions, intentional release of radionuclides into water or air. Both effects on human health (DNA and systemic effects) and on ecosystems are detailed, with particular focus on environmentally relevant low-dose ranges. The state-of-the-art contributions to the book are authored by leading experts; they tackle the relevant questions from the perspectives of radiation genetics, radiobiology, radioecology, radiation epidemiology and risk assessment.
Open nonlinear systems are capable of self-organization in space and time. This realization constitutes a major breakthrough of modern science, and is currently at the origin of explosive developments in chemistry, physics and biology. Observations and numerical computations of nonlinear systems surprise us by their inexhaustible and sometimes nonintuitive variety of structures with different shapes and functions. But as well as variety one finds on closer inspection that nonlinear phenomena share universal aspects of pattern formation in time and space. These similarities make it possible to bridge the gap between inanimate and living matter at various levels of complexity, in both theory and experiment. This book is an account of different approaches to the study of this pattern formation. The universality of kinetic, thermodynamic and dimensional approaches is documented through their application to purely mathematical, physical and chemical systems, as well as to systems in nature: biochemical, cellular, multicellular, physiological, neurophysiological, ecological and economic systems. Hints given throughout the book allow the reader to discover how to make use of the principles and methods in different fields of research, including those not treated explicitly in the book.
The structural and chemical limitations to respiratory gas exchange existing between the ambient medium and the cell are comprehensively treated. Beginning with an examination of the natural oscillations of respiratory gases in both terrestrial and aquatic environments, Vertebrate Gas Exchange details the structures involved in convecting the medium (air or water), the morphometrics of capillary gas transfers, and gas transfer kinetics. Important features include details on measurement techniques associated with tissue capillary supply and gas exchange kinetics.
In the past 5 years there has been an enormous increase of evidence that the ion channels activated by mechanical force are common to a wide variety of cell types. Mechanosensitive (MS) ion channels form a small proportion of the total channel population. They are now found in more than 30 cell types from E. coli, yeast, to plant, invertebrate, and vertebrate cells, where they occur in virtually all types of cells from bone to smooth muscle, as well as neurons. The majority of MS channels are permeable to monovalent cations and are slightly selective for K+ over Na +. How 2 ever, there are several reports of anion-selective MS channels, MS Ca + channels, and MS channels with large conductances that do not dis criminate markedly between cations and anions. Recently B. Hille has postulated possible evolutionary relationships between several types of ion channels, with mechanosensitive channels predating even the eukaryotes. Two voltage-gated channel types originate with the stem eukaryotes, as deduced from the presence of voltage-gated K+ 2 and Ca + channels in protozoa, algae, or higher plants. Agonist-gated chan nels as well as voltage-gated Na + channels appear with the earliest metazoan animals, as deduced from the presence of Na + spikes and fast chemical synapses in cnidaria (coelenterates), ctenophores, and all higher animals.
In Videofluorscopic Studies of Speech in Patients with Cleft Palate, Drs. M.L. Skolnick and E.R. Cohn present multiview videofluoroscopy as a technique for the radiological evaluation of speech defects in patients with cleft palate. Dr. Skolnick's invaluable contributions as both the originator and leading authority on the subject are discussed in a concise, clinical fashion. Topics examined include the anatomy and imaging of the velopharyngeal portal; the equipment and techniques of multiview videofluoroscopy; the interpretation of results and various patterns of velopharyngeal closure; Passavant's Ridge and patterns of velopharyngeal closure; normal and abnormal speech production; and the evaluation of test results. This book is the only source which concisely and completely describes the technique and its interpretations for those who need a description of the clinical procedure. |
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