Estimation of the metabolite complement of plant material involves a wide range of techniques and technologies and that breadth continues to increase. Metabolomics research typically involves multiple sites for material preparation and analysis and most investigations are "high throughput", meaning that chemical analysis of sample sets are inevitably carried out over an extended period of time. In, Plant Metabolomics: Methods and Protocols expert researchers in the field detail many of the stages which are now commonly used to study plant metabolomics workflow. Stages of this workflow, up to and including the statistical analysis, accurate and detailed collection of meta-data are also essential for good process management, to satisfy reporting requirements and to ensure wider interpretability and reuse results.Written in the highly successful Methods in Molecular Biology (TM) series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and key tips on troubleshooting and avoiding known pitfalls. Through and intuitive Plant Metabolomics: Methods and Protocols, seeks to aid scientists in the further study of the methods for all the stages of the plant metabolomics workflow.

This proceedings volume contains a selection of invited and contributed papers of the 9th International Workshop on Sulfur Metabolism in Plants, which was hosted by Heinz Rennenberg, Albert-Ludwigs-University Freiburg and was held at Schloss Reinach, Freiburg-Munzigen, Germany from April 14-17, 2014. The focus of this workshop was on molecular physiology and ecophysiology of sulfur in plants and the content of this volume presents an overview on the current research developments in this field.

This book is devoted to the fascinating superfamily of plant ATP-binding cassette (ABC) transporters and their variety of transported substrates. It highlights their exciting biological functions, covering aspects ranging from cellular detoxification, through development, to symbiosis and defense. Moreover, it also includes a number of chapters that center on ABC transporters from non-Arabidopsis species. ABC proteins are ubiquitous, membrane-intrinsic transporters that catalyze the primary (ATP-dependent) movement of their substrates through biological membranes. Initially identified as an essential aspect of a vacuolar detoxification process, genetic work in the last decade has revealed an unexpectedly diverse variety of ABC transporter substrates, which include not only xenobiotic conjugates, but also heavy metals, lipids, terpenoids, lignols, alkaloids and organic acids. The discovery that members of the ABCB and ABCG family are involved in the movement of phytohormones has further sparked their exploration and provided a new understanding of the whole family. Accordingly, the trafficking, regulation and structure-function of ABCB-type auxin transporters are especially emphasized in this book.

The first part of the book presents the evolution of plants starting from photosynthetic cells to topics like Gymnosperms and Angiosperms, including the evolution of the breeding system. Geological and molecular data were used, helping us to show with more details each of the phases presented. Also, specialization of the reproductive systems such as evolution of unissexuality (dioecy and monoecy), evolution of self-incompatibility, selfing fertilization and mixed mating systems were considered. The last part discusses the biology and genetics of the reproductive systems and shows the strategies that modern plants use in asexual reproduction (vegetative and apomictic reproduction) and sexual reproduction. In addition, the sexual reproduction topics such as gametogenesis, the genetic control of reproductive organs, systems that promote outcrossing, selfing and mixed mating systems were also included.

Nutrient Use Efficiency in Plants: Concepts and Approaches is the ninth volume in the Plant Ecophysiology series. It presents a broad overview of topics related to improvement of nutrient use efficiency of crops. Nutrient use efficiency (NUE) is a measure of how well plants use the available mineral nutrients. It can be defined as yield (biomass) per unit input (fertilizer, nutrient content). NUE is a complex trait: it depends on the ability to take up the nutrients from the soil, but also on transport, storage, mobilization, usage within the plant, and even on the environment. NUE is of particular interest as a major target for crop improvement. Improvement of NUE is an essential pre-requisite for expansion of crop production into marginal lands with low nutrient availability but also a way to reduce use of inorganic fertilizer.

This monograph provides an overview of beneficial plant-bacterial interactions in a straightforward and easy-to-understand format, and includes a wealth of unique illustrations elaborating every major point. Study questions that emphasize the key points are provided at the end of each chapter. One way to feed all of the people in the world’s growing population is through the increased use of plant-growth-promoting bacteria in agriculture. These bacteria not only directly promote growth but also protect plants against a wide range of biotic and abiotic stresses. Moreover, they can be used to support procedures for biologically cleaning up the environment. Plant-growth-promoting bacteria are already being used successfully on a small scale in several countries, and as this technology matures, the world may witness a major paradigm shift in agricultural practice.

Plant Endosomes: Methods and Protocols explores a collection of protocols and techniques to analyze in vivo trafficking of endocytic/endosomal cargo, including lipids, fluids, proteins and ligands, ultrastructural features of endosomes by high-pressure freezing/freeze-substitution and electron tomography, as well as protein-protein interactions in the endosomal and endomembrane system. The volume continues with coverage of the sorting defects in the transport of vacuolar storage proteins, function conservation of plant endosomal proteins, endosomal trafficking during plant responses to pathogens, protein composition of endosomes and endocytic vesicles, ubiquitination of endosomal cargo proteins and the identification of novel endosomal components by chemical genomics and proteomics. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols and tips on troubleshooting and avoiding known pitfalls. Detailed and practical, Plant Endosomes: Methods and Protocols gathers contributions from many leading and emerging plant membrane trafficking researchers in order to promote and facilitate novel studies and ideas in this vital field.

Maize is one of the most important and widely grown cereal crops in the world and is a staple food for almost a billion people, particularly in the developing world. It has been estimated that maize yields need to increase by 60% by 2050. There is an urgent need to increase yields in the face of such challenges as climate change, threats from pests and diseases and the need to make cultivation more resource-efficient and sustainable. Drawing on an international range of expertise, this collection focuses on ways of improving the cultivation of maize at each step in the value chain, from breeding to post-harvest storage. Volume 1 reviews research on breeding and its use in improving nutritional quality and agronomic performance. It then goes on to discuss the challenges in translating these advances into effective outcomes for smallholders in the developing world. Achieving sustainable cultivation of maize Volume 1: From improved varieties to local applications will be a standard reference for cereal scientists in universities, government and other research centres and companies involved in maize cultivation. It is accompanied by Volume 2 which reviews improvements in cultivation techniques as well as the management of pests and diseases.

This brief describes various methods of chitosan nano-materials synthesis, with detailed discussion of various factors effecting its synthesis process, stability and physicochemical properties. Chitosan is naturally occurring biopolymer derived from chitin. Due to the unique biological properties of chitosan nano-materials such as antimicrobial, plant growth inducer, plant defense modulator, chitosan has gained attention in fields of plant sciences. Book further extended the details of different types of chitosan nano-materials specially for plant applications along with its future prospects in plant protection and growth. Bioactivities of chitosan nano-materials and its mechanism have also been covered. This book aims to widening the understanding of the synthesis, characterization and use of chitosan based nano-materials in plant system.

This book describes the unique characean experimental system, which provides a simplified model for many aspects of the physiology, transport and electrophysiology of higher plants. The first chapter offers a thorough grounding in the morphology, taxonomy and ecology of Characeae plants. Research on characean detached cells in steady state is summarised in Chapter 2, and Chapter 3 covers characean detached cells subjected to calibrated and mostly abiotic types of stress: touch, wounding, voltage clamp to depolarised and hyperpolarised potential difference levels, osmotic and saline stress. Chapter 4 highlights cytoplasmic streaming, cell-to-cell transport, gravitropism, cell walls and the role of Characeae in phytoremediation. The book is intended for researchers and students using the characean system and will also serve as an invaluable reference resource for electrophysiologists working on higher plants.

The book is a fundamental reference source on reaction wood for wood scientists and technologists, plant biologists, silviculturists, forest ecologists, and anyone involved in the growing of trees and the processing of wood. It brings together our current understanding of all aspects of reaction wood, and is the first book to discuss both compression wood and tension wood. Trees produce reaction wood to maintain the vertical orientation of their stems and the optimum angle of each branch. They achieve this by laying down fibre cell walls in which differences in physical and chemical structure from those of normal fibres are expressed as differential stresses across the stem or branch. This process, while of obvious value for the survival of the tree, causes serious problems for the utilisation of timber. Timber derived from trees containing significant amounts of reaction wood is subject to dimensional instability on drying, causing twisting, bending and splitting. It is also difficult to work as timber, and for the pulp and paper industry the cost of removing the increased amount of lignin in compression wood is substantial. This has both practical and economic consequences for industry. Understanding the factors controlling reaction wood formation and its effect on wood structure is therefore fundamental to our understanding of the adaptation of trees to their environment and to the sustainable use of wood. The topics covered include: -Morphology, anatomy and ultrastructure of reaction wood -Cell-wall polymers in reaction wood and their biosynthesis -Changes in tree proteomes during reaction wood formation -The biomechanical action and biological functions of reaction wood - Physical and mechanical properties of reaction wood from the scale of cell walls to planks -The detection and characterisation of compression wood -Effects of reaction wood on the performance of wood and wood-based products - Commercial implications of reaction wood and the influence of forest management on its formation

This book provides a comprehensive coverage of the advances in genetics and genomics research on rice. The chapters feature the latest developments in rice research and cover such topics as the tools and resources for the functional analysis of rice genes, the identification of useful genes for rice improvement, the present understanding of rice development and biological processes, and the application of this present understanding towards rice improvement. The volume also features a perspective on synthesis and prospects, laying the groundwork for future advances in rice genetics and genomics. Written by authorities in the field, Genetics and Genomics of Rice will serve as an invaluable reference for rice researchers for years to come.

This book covers the key features of nitric oxide (NO) in plants. Comprising nine chapters, Part I highlights its metabolism and identification in plants. Part II, which consists of eight chapters, focuses on the chemical, physical and biochemical properties of the NO molecule and its derivatives; on its functional role and mode of action; and on its signaling and interaction with phytohormones, mineral nutrients, biomolecules, ions and ion channels in plants under abiotic stresses. Combining the expertise of leading researchers in the field, the book provides a concise overview of plant NO biology and offers a valuable reference work.

This book focuses on the mechanistic (microscopic) understanding of radionuclide uptake by plants in contaminated soils and potential use of phytoremediation. The key features concern radionuclide toxicity in plants, how the radioactive materials are absorbed by plants, and how the plants cope with the toxic responses. The respective chapters examine soil classification, natural plant selection, speciation of actinides, kinetic modeling, and case studies on cesium uptake after radiation accidents. Radionuclide contaminants pose serious problems for biological systems, due to their chemical toxicity and radiological effects. The processes by which radionuclides can be incorporated into vegetation can either originate from activity interception by external plant surfaces (either directly from the atmosphere or from resuspended material), or through uptake of radionuclides via the root system. Subsequent transfer of toxic elements to the human food chain is a concrete danger. Therefore, the molecular mechanisms and genetic basis of transport into and within plants needs to be understood for two reasons: The effectiveness of radionuclide uptake into crop plants – so-called transfer coefficient – is a prerequisite for the calculation of dose due to the food path. On the other hand, efficient radionuclide transfer into plants can be made use of for decontamination of land – so-called phytoremediation, the direct use of living, green plants for in situ removal of pollutants from the environment or to reduce their concentrations to harmless levels.

This book focuses on morphological and anatomical strategies developed by halophytes during evolution that allow them to survive in high-salt environments. These adaptive strategies refer to well integrated structural features, such as succulence, salt secretion (salt glands and vesicular hairs), aerenchyma, Kranz anatomy, bulliform cells, successive cambia, tracheoidioblasts and endodermis with pronounced Casparian strips. The authors present cross sections of the roots, stems and leaves of 62 halophyte species belonging to 18 families from different habitats and climates (temperate, Mediterranean). They also discuss the ecological, physiological and evolutionary aspects of the various adaptive structures in an integrative way. Beginning with the structural level, this book offers novel insights into the ecology of halophytes and opens new perspectives for the identification of salt-tolerant crop plants or halophytes that can be used for ecological purposes, such as bio-remediation and revegetation.

During the last ten years, knowledge about the multitude of adaptive responses of plants to low oxygen stress has grown immensely. The oxygen sensor mechanism has been discovered, the knowledge about the interaction network of gene expression is expanding and metabolic adaptations have been described in detail. Furthermore, morphological changes were investigated and the regulative mechanisms triggered by plant hormones or reactive oxygen species have been revealed. This book provides a broad overview of all these aspects of low oxygen stress in plants. It integrates knowledge from different disciplines such as molecular biology, biochemistry, ecophysiology and agricultural / horticultural sciences to comprehensively describe how plants cope with low oxygen stress and discuss its ecological and agronomical consequences. This book is written for plant scientists, biochemists and scientists in agriculture and ecophysiology.

A number of abiotic factors such as drought, salinity, extreme temperatures, low or high light intensity, and deficiency or toxic levels of nutrients have huge impacts on crop productivity, and a furthering of our understanding of the molecular, biochemical, and physiological basis of stress tolerance has been widely recognized as critical. In Plant Stress Tolerance: Methods and Protocols, expert researchers cover the most important widely-used techniques, including cutting-edge strategies, in a manner that ensures effective results. Beginning with reviews on dehydration, salinity, and cold tolerance as well as on oxidative stress, the volume then continues with methods involving topics such as describing the identification of stress-regulated genes, proteins, and microRNAs using diverse approaches, measurement of osmotic adjustment, proline levels, enzymes involved in proline metabolism, and sugars as well as determination of ROS levels, lipid peroxidation, ion leakage, and the enzymes involved in ROS detoxification. Written in the highly successful Methods in Molecular Biology (TM) series format, chapters include introductions to their respective subjects, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Comprehensive and up-to-date, Plant Stress Tolerance: Methods and Protocols provides a wide range of easy-to-follow protocols catering to the needs of plant physiologists, biochemists, and molecular biologists interested in probing this vital area of study.

This volume illustrates the complex root system, including the various essential roles of roots as well as their interaction with diverse microorganisms localized in or near the root system. Following initial chapters describing the anatomy and architecture as well as the growth and development of root systems, subsequent chapters focus on the various types of root symbiosis with bacteria and fungi in the rhizosphere. A third section covers the physiological strategies of roots, such as nitrate assimilation, aquaporins, the role of roots in plant defense responses and in response to droughts and salinity changes. The book's final chapters discuss the prospects of applied engineering of roots, i.e., inventing new root structures or functions through genetic modification, but also with conventional breeding and manipulation of root symbionts. The budding field of root engineering is expected to promote a second green revolution.

Bryophytes, which are important constituents of ecosystems globally and often dominate carbon and water dynamics at high latitudes and elevations, were also among the pioneers of terrestrial photosynthesis. Consequently, in addition to their present day ecological value, modern representatives of these groups contain the legacy of adaptations that led to the greening of Earth. This volume brings together experts on bryophyte photosynthesis whose research spans the genome and cell through whole plant and ecosystem function and combines that with historical perspectives on the role of algal, bryophyte and vascular plant ancestors on terrestrialization of the Earth. The eighteen well-illustrated chapters reveal unique physiological approaches to achieving carbon balance and dealing with environmental limitations and stresses that present an alternative, yet successful strategy for land plants.

The Himalayan region is among the largest mountains systems of the world with uncounted unique medicinal plants resources. The lesser Himalayas ranges are the extension of Greater Himalayas. They have unique ecology, vegetation and diversity of medicinal flora due to tremendous variation in the altitude, climate and associated wildlife. The utilization of medicinal plants in medicine suffers from the fact that although plants are used to treat diseases, scientific evidence is lacking in many cases. Different societies of the world use the plants according to their own beliefs and knowledge and previous experiences. Their knowledge about the use of the plants is usually not known to the other world or science. This book provides a brief introduction of Lesser Himalayas, ethnobotanical aspects, marketing and anthropogenic pressure on medicinal flora. It comprises one hundred medicinal plant species including Pteridophytes, Gymnosperms and Angiosperms (Monocots and Dicots) along with their scientific description and traditional uses.

Plant innate immunity is a potential surveillance system of plants and is the first line of defense against invading pathogens. The immune system is a sleeping system in unstressed healthy plants and is activated on perception of the pathogen-associated molecular patterns (PAMP; the pathogen’s signature) of invading pathogens. The PAMP alarm/danger signals are perceived by plant pattern-recognition receptors (PRRs). The plant immune system uses several second messengers to encode information generated by the PAMPs and deliver the information downstream of PRRs to proteins which decode/interpret signals and initiate defense gene expression. This book describes the most fascinating PAMP-PRR signaling complex and signal transduction systems. It also discusses the highly complex networks of signaling pathways involved in transmission of the signals to induce distinctly different defense-related genes to mount offence against pathogens.

This book provides extensive and comprehensive information to researchers and academicians who are interested in radionuclide contamination, its sources and environmental impact. It is also useful for graduate and undergraduate students specializing in radioactive-waste disposal and its impact on natural as well as manmade environments. A number of sites are affected by large legacies of waste from the mining and processing of radioactive minerals. Over recent decades, several hundred radioactive isotopes (radioisotopes) of natural elements have been produced artificially, including 90Sr, 137Cs and 131I. Several other anthropogenic radioactive elements have also been produced in large quantities, for example technetium, neptunium, plutonium and americium, although plutonium does occur naturally in trace amounts in uranium ores. The deposition of radionuclides on vegetation and soil, as well as the uptake from polluted aquifers (root uptake or irrigation) are the initial point for their transfer into the terrestrial environment and into food chains. There are two principal deposition processes for the removal of pollutants from the atmosphere: dry deposition is the direct transfer through absorption of gases and particles by natural surfaces, such as vegetation, whereas showery or wet deposition is the transport of a substance from the atmosphere to the ground by snow, hail or rain. Once deposited on any vegetation, radionuclides are removed from plants by the airstre am and rain, either through percolation or by cuticular scratch. The increase in biomass during plant growth does not cause a loss of activity, but it does lead to a decrease in activity concentration due to effective dilution. There is also systemic transport (translocation) of radionuclides within the plant subsequent to foliar uptake, leading the transfer of chemical components to other parts of the plant that have not been contaminated directly.

The functional characterization of a key enzyme in the phosphatidylinositol (PI) signaling pathway in the model plant Arabidopsis thaliana is the focus of the research summarised in this thesis. Moreover, a particular focus is the exploration of the biological functions of Arabidopsis phophatidylinositol monophosphate 5-kinase 2 (PIP5K2) which catalyzes the synthesis of phophatidylinositol (4,5) bisphosphate, the precursor of two important second messengers (inositol 1,4,5-trisphosphate and diacylglycerol). Through molecular and genetic approaches, the author isolated and characterized the expression pattern, physiological functions and the underlying mechanism of Arabidopsis PIP5K2. It is found that PIP5K2 is involved in regulating lateral root formation and root gravity response through modulating auxin accumulation and polar auxin transport and also plays a critical role in salt tolerance. These findings shed new light on the crosstalk between PI signaling and auxin response, both of which have crucial regulatory roles in plant development.

The importance of haploids is well known to geneticists and plant breeders. The discovery of anther-derived haploid Datura plants in 1964 initiated great excitement in the plant breeding and genetics communities as it offered shortcuts in producing highly desirable homozygous plants. Unfortunately, the expected revolution was slow to materialise due to problems in extending methods to other species, including genotypic dependence, recalcitrance, slow development of tissue culture technologies and a lack of knowledge of the underlying processes. Recent years have witnessed great strides in the research and application of haploids in higher plants. After a lull in activities, drivers for the resurgence have been: (1) development of effective tissue culture protocols, (2) identification of genes c- trolling embryogenesis, and (3) large scale and wide spread commercial up-take in plant breeding and plant biotechnology arenas. The first major international symposium on "Haploids in Higher Plants" took place in Guelph, Canada in 1974. At that time there was much excitement about the potential benefits, but in his opening address Sir Ralph Riley offered the following words of caution: "I believe that it is quite likely that haploid research will contr- ute cultivars to agriculture in several crops in the future. However, the more extreme claims of the enthusiasts for haploid breeding must be treated with proper caution. Plant breeding is subject from time to time to sweeping claims from ent- siastic proponents of new procedures.

Plant Cell Morphogenesis: Methods and Protocols provides a collection of experimental techniques used in current research on the cellular aspects of plant morphogenesis. Methods and techniques include contemporary takes on classical light microscopy and histochemistry through automated microscopy applications, use of advanced optical tools, quantitative image analysis, study of cellular dynamics of apical meristems, specialized electron microscopy techniques, and methods used to study specific model plant cell types and protocols for using heterologous expression in yeast to study cell morphogenesis genes. Individual chapters in the highly successful Methods in Molecular Biology series format are written by expert researchers in the field and include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step laboratory protocols, and key tips on troubleshooting and avoiding known pitfalls.