A Guide to Doing Statistics in Second Language Research Using SPSS and R, Second Edition is the only text available that demonstrates how to use SPSS and R as specifically related to applied linguistics and SLA research. This new edition is up-to-date with the most recent version of the SPSS software and now also includes coverage of R, a software program increasingly used by researchers in this field. Supported by a number of pedagogical features, including tip boxes and practice activities, and a wealth of screenshots, this book takes readers through each step of performing and understanding statistical research, covering the most commonly used tests in second language research, including t-tests, correlation, and ANOVA. A robust accompanying website covers additional tests of interest to students and researchers, taking them step-by-step through carrying out these tests themselves. In this comprehensive and hands-on volume, Jenifer Larson-Hall equips readers with a thorough understanding and the practical skills necessary to conducting and interpreting statisical research effectively using SPSS and R, ideal for graduate students and researchers in SLA, social sciences, and applied lingustics. For more information and materials, please visit www.routledge.com/cw/larson-hall.

This book is a timely and critical introduction for those interested in what data science is (and isn't), and how it should be applied. The language is conversational and the content is accessible for readers without a quantitative or computational background; but, at the same time, it is also a practical overview of the field for the more technical readers. The overarching goal is to demystify the field and teach the reader how to develop an analytical mindset instead of following recipes. The book takes the scientist's approach of focusing on asking the right question at every step as this is the single most important factor contributing to the success of a data science project. Upon finishing this book, the reader should be asking more questions than I have answered. This book is, therefore, a practising scientist's approach to explaining data science through questions and examples.

Quickly and Easily Write Dynamic Documents Suitable for both beginners and advanced users, Dynamic Documents with R and knitr, Second Edition makes writing statistical reports easier by integrating computing directly with reporting. Reports range from homework, projects, exams, books, blogs, and web pages to virtually any documents related to statistical graphics, computing, and data analysis. The book covers basic applications for beginners while guiding power users in understanding the extensibility of the knitr package. New to the Second Edition A new chapter that introduces R Markdown v2 Changes that reflect improvements in the knitr package New sections on generating tables, defining custom printing methods for objects in code chunks, the C/Fortran engines, the Stan engine, running engines in a persistent session, and starting a local server to serve dynamic documents Boost Your Productivity in Statistical Report Writing and Make Your Scientific Computing with R Reproducible Like its highly praised predecessor, this edition shows you how to improve your efficiency in writing reports. The book takes you from program output to publication-quality reports, helping you fine-tune every aspect of your report.

Describes the entire data science procedure of how the infectious disease data are collected, curated, visualized, and fed to predictive models, which facilitates effective communication between data sources, scientists, and decision-makers. Describes practical concepts of infectious disease data and provides particular data science perspectives. Overview of the unique features and issues of infectious disease data and how they impact epidemic modeling and projection. Introduces various classes of models and state-of-the-art learning methods to analyze infectious diseases data with valuable insights on how different models and methods could be connected.

The First Book to Explain How a User of R or MATLAB Can Benefit from the Other In today's increasingly interdisciplinary world, R and MATLAB (R) users from different backgrounds must often work together and share code. R and MATLAB (R) is designed for users who already know R or MATLAB and now need to learn the other platform. The book makes the transition from one platform to the other as quick and painless as possible. Enables R and MATLAB Users to Easily Collaborate and Share Code The author covers essential tasks, such as working with matrices and vectors, writing functions and other programming concepts, graphics, numerical computing, and file input/output. He highlights important differences between the two platforms and explores common mistakes that are easy to make when transitioning from one platform to the other.

This book is open access under a CC BY 4.0 license This open access book brings together the latest genome base prediction models currently being used by statisticians, breeders and data scientists. It provides an accessible way to understand the theory behind each statistical learning tool, the required pre-processing, the basics of model building, how to train statistical learning methods, the basic R scripts needed to implement each statistical learning tool, and the output of each tool. To do so, for each tool the book provides background theory, some elements of the R statistical software for its implementation, the conceptual underpinnings, and at least two illustrative examples with data from real-world genomic selection experiments. Lastly, worked-out examples help readers check their own comprehension.The book will greatly appeal to readers in plant (and animal) breeding, geneticists and statisticians, as it provides in a very accessible way the necessary theory, the appropriate R code, and illustrative examples for a complete understanding of each statistical learning tool. In addition, it weighs the advantages and disadvantages of each tool.

The MATLAB (R) programming environment is often perceived as a platform suitable for prototyping and modeling but not for "serious" applications. One of the main complaints is that MATLAB is just too slow. Accelerating MATLAB Performance aims to correct this perception by describing multiple ways to greatly improve MATLAB program speed. Packed with thousands of helpful tips, it leaves no stone unturned, discussing every aspect of MATLAB. Ideal for novices and professionals alike, the book describes MATLAB performance in a scale and depth never before published. It takes a comprehensive approach to MATLAB performance, illustrating numerous ways to attain the desired speedup. The book covers MATLAB, CPU, and memory profiling and discusses various tradeoffs in performance tuning. It describes both the application of standard industry techniques in MATLAB, as well as methods that are specific to MATLAB such as using different data types or built-in functions. The book covers MATLAB vectorization, parallelization (implicit and explicit), optimization, memory management, chunking, and caching. It explains MATLAB's memory model and details how it can be leveraged. It describes the use of GPU, MEX, FPGA, and other forms of compiled code, as well as techniques for speeding up deployed applications. It details specific tips for MATLAB GUI, graphics, and I/O. It also reviews a wide variety of utilities, libraries, and toolboxes that can help to improve performance. Sufficient information is provided to allow readers to immediately apply the suggestions to their own MATLAB programs. Extensive references are also included to allow those who wish to expand the treatment of a particular topic to do so easily. Supported by an active website, and numerous code examples, the book will help readers rapidly attain significant reductions in development costs and program run times.

Multiple factor analysis (MFA) enables users to analyze tables of individuals and variables in which the variables are structured into quantitative, qualitative, or mixed groups. Written by the co-developer of this methodology, Multiple Factor Analysis by Example Using R brings together the theoretical and methodological aspects of MFA. It also includes examples of applications and details of how to implement MFA using an R package (FactoMineR). The first two chapters cover the basic factorial analysis methods of principal component analysis (PCA) and multiple correspondence analysis (MCA). The next chapter discusses factor analysis for mixed data (FAMD), a little-known method for simultaneously analyzing quantitative and qualitative variables without group distinction. Focusing on MFA, subsequent chapters examine the key points of MFA in the context of quantitative variables as well as qualitative and mixed data. The author also compares MFA and Procrustes analysis and presents a natural extension of MFA: hierarchical MFA (HMFA). The final chapter explores several elements of matrix calculation and metric spaces used in the book.

John Chambers turns his attention to R, the enormously successful open-source system based on the S language. His book guides the reader through programming with R, beginning with simple interactive use and progressing by gradual stages, starting with simple functions. More advanced programming techniques can be added as needed, allowing users to grow into software contributors, benefiting their careers and the community. R packages provide a powerful mechanism for contributions to be organized and communicated. This is the only advanced programming book on R, written by the author of the S language from which R evolved.

About this book * Gives the reader hands on example-base experience for simulating dynamical models in MATLAB (R)/Simulink (R) and animating them in VRML * More than 150 images describe each step in the model realizations helping readers to understand them visually * Diverse examples and profound problem treatment enable the reader to animate complex dynamical problems m-files, Simulink models, VRML files and jpegs available for download provide full solutions for the end-of-chapter problems Virtual Reality and Animation for MATLAB (R) and Simulink (R) Users demonstrates the simulation and animation of physical systems using the MATLAB (R) Virtual Reality Toolbox (virtual models are created in V-Realm Builder). The book is divided into two parts; the first addresses MATLAB (R) and the second Simulink (R). The presentation is problem-based with each chapter teaching the reader a group of essential principles in the context of a step-by-step solution to a particular issue. Examples of the systems covered include mass-spring-dampers, a crank-slider mechanism and a moving vehicle. The examples are given in ascending level of difficulty and contain MATLAB (R)/Simulink (R) codes deliberately simplified so that readers can focus on: * understanding how to link a 3-d virtual scene to MATLAB (R)/Simulink (R); and * manipulating the 3-d virtual scene in MATLAB (R)/Simulink (R). When studied in sequence, the chapters of this text form a coherent whole enabling the reader to gain a thorough expertise in virtual simulation and animation of dynamical models using MATLAB (R)/Simulink (R). Individual chapters stand on their own, however, so that readers interested in a particular system can concentrate on it easily. Problems are provided in each chapter to give practice in the techniques demonstrated and to extend the range of the systems studied, for example, into the control sphere. Solution code for these problems can be downloaded from insert URL. Whether modeling the dynamics of a simple pendulum, a robot arm or a moving car, animation of a dynamical model can enliven and encourage understanding of mechanical systems and thus contribute to control design. Virtual Reality and Animation for MATLAB (R) and Simulink (R) Users will be instructive and interesting to anyone, researcher or student, working with the dynamics of physical systems. Readers are assumed to have some familiarity with MATLAB (R).

Choose the Proper Statistical Method for Your Sensory Data Issue Analyzing Sensory Data with R gives you the foundation to analyze and interpret sensory data. The book helps you find the most appropriate statistical method to tackle your sensory data issue. Covering quantitative, qualitative, and affective approaches, the book presents the big picture of sensory evaluation. Through an integrated approach that connects the different dimensions of sensory evaluation, you'll understand: The reasons why sensory data are collected The ways in which the data are collected and analyzed The intrinsic meaning of the data The interpretation of the data analysis results Each chapter corresponds to one main sensory topic. The chapters start with presenting the nature of the sensory evaluation and its objectives, the sensory particularities related to the sensory evaluation, details about the data set obtained, and the statistical analyses required. Using real examples, the authors then illustrate step by step how the analyses are performed in R. The chapters conclude with variants and extensions of the methods that are related to the sensory task itself, the statistical methodology, or both.

Visualization and Verbalization of Data shows how correspondence analysis and related techniques enable the display of data in graphical form, which results in the verbalization of the structures in data. Renowned researchers in the field trace the history of these techniques and cover their current applications. The first part of the book explains the historical origins of correspondence analysis and associated methods. The second part concentrates on the contributions made by the school of Jean-Paul Benzecri and related movements, such as social space and geometric data analysis. Although these topics are viewed from a French perspective, the book makes them understandable to an international audience. Throughout the text, well-known experts illustrate the use of the methods in practice. Examples include the spatial visualization of multivariate data, cluster analysis in computer science, the transformation of a textual data set into numerical data, the use of quantitative and qualitative variables in multiple factor analysis, different possibilities of recoding data prior to visualization, and the application of duality diagram theory to the analysis of a contingency table.

Learn How to Use Growth Curve Analysis with Your Time Course Data An increasingly prominent statistical tool in the behavioral sciences, multilevel regression offers a statistical framework for analyzing longitudinal or time course data. It also provides a way to quantify and analyze individual differences, such as developmental and neuropsychological, in the context of a model of the overall group effects. To harness the practical aspects of this useful tool, behavioral science researchers need a concise, accessible resource that explains how to implement these analysis methods. Growth Curve Analysis and Visualization Using R provides a practical, easy-to-understand guide to carrying out multilevel regression/growth curve analysis (GCA) of time course or longitudinal data in the behavioral sciences, particularly cognitive science, cognitive neuroscience, and psychology. With a minimum of statistical theory and technical jargon, the author focuses on the concrete issue of applying GCA to behavioral science data and individual differences. The book begins with discussing problems encountered when analyzing time course data, how to visualize time course data using the ggplot2 package, and how to format data for GCA and plotting. It then presents a conceptual overview of GCA and the core analysis syntax using the lme4 package and demonstrates how to plot model fits. The book describes how to deal with change over time that is not linear, how to structure random effects, how GCA and regression use categorical predictors, and how to conduct multiple simultaneous comparisons among different levels of a factor. It also compares the advantages and disadvantages of approaches to implementing logistic and quasi-logistic GCA and discusses how to use GCA to analyze individual differences as both fixed and random effects. The final chapter presents the code for all of the key examples along with samples demonstrating how to report GCA results. Throughout the book, R code illustrates how to implement the analyses and generate the graphs. Each chapter ends with exercises to test your understanding. The example datasets, code for solutions to the exercises, and supplemental code and examples are available on the author's website.

Designed for a graduate course in applied statistics, Nonparametric Methods in Statistics with SAS Applications teaches students how to apply nonparametric techniques to statistical data. It starts with the tests of hypotheses and moves on to regression modeling, time-to-event analysis, density estimation, and resampling methods. The text begins with classical nonparametric hypotheses testing, including the sign, Wilcoxon sign-rank and rank-sum, Ansari-Bradley, Kolmogorov-Smirnov, Friedman rank, Kruskal-Wallis H, Spearman rank correlation coefficient, and Fisher exact tests. It then discusses smoothing techniques (loess and thin-plate splines) for classical nonparametric regression as well as binary logistic and Poisson models. The author also describes time-to-event nonparametric estimation methods, such as the Kaplan-Meier survival curve and Cox proportional hazards model, and presents histogram and kernel density estimation methods. The book concludes with the basics of jackknife and bootstrap interval estimation. Drawing on data sets from the author's many consulting projects, this classroom-tested book includes various examples from psychology, education, clinical trials, and other areas. It also presents a set of exercises at the end of each chapter. All examples and exercises require the use of SAS 9.3 software. Complete SAS codes for all examples are given in the text. Large data sets for the exercises are available on the author's website.

Basic Statistics provides an accessible and comprehensive introduction to statistics using the free, state-of-the-art, powerful software program R. This book is designed to both introduce students to key concepts in statistics and to provide simple instructions for using R. This concise book: *Teaches essential concepts in statistics, assuming little background knowledge on the part of the reader *Introduces students to R with as few sub-commands as possible for ease of use *Provides practical examples from the educational, behavioral, and social sciences With clear explanations of statistical processes and step-by-step commands in R, Basic Statistics will appeal to students and professionals across the social and behavioral sciences.

Methods of Statistical Model Estimation examines the most important and popular methods used to estimate parameters for statistical models and provide informative model summary statistics. Designed for R users, the book is also ideal for anyone wanting to better understand the algorithms used for statistical model fitting.

The text presents algorithms for the estimation of a variety of regression procedures using maximum likelihood estimation, iteratively reweighted least squares regression, the EM algorithm, and MCMC sampling. Fully developed, working R code is constructed for each method. The book starts with OLS regression and generalized linear models, building to two-parameter maximum likelihood models for both pooled and panel models. It then covers a random effects model estimated using the EM algorithm and concludes with a Bayesian Poisson model using Metropolis-Hastings sampling.

The book's coverage is innovative in several ways. First, the authors use executable computer code to present and connect the theoretical content. Therefore, code is written for clarity of exposition rather than stability or speed of execution. Second, the book focuses on the performance of statistical estimation and downplays algebraic niceties. In both senses, this book is written for people who wish to fit statistical models and understand them.

See Professor Hilbe discuss the book.

PAMIR (Parameterized Adaptive Multidimensional Integration Routines) is a suite of Fortran programs for multidimensional numerical integration over hypercubes, simplexes, and hyper-rectangles in general dimension p, intended for use by physicists, applied mathematicians, computer scientists, and engineers. The programs, which are available on the internet at www.pamir-integrate.com and are free for non-profit research use, are capable of following localized peaks and valleys of the integrand. Each program comes with a Message-Passing Interface (MPI) parallel version for cluster use as well as serial versions.The first chapter presents introductory material, similar to that on the PAMIR website, and the next is a "manual" giving much more detail on the use of the programs than is on the website. They are followed by many examples of performance benchmarks and comparisons with other programs, and a discussion of the computational integration aspects of PAMIR, in comparison with other methods in the literature. The final chapter provides details of the construction of the algorithms, while the Appendices give technical details and certain mathematical derivations.

PAMIR (Parameterized Adaptive Multidimensional Integration Routines) is a suite of Fortran programs for multidimensional numerical integration over hypercubes, simplexes, and hyper-rectangles in general dimension p, intended for use by physicists, applied mathematicians, computer scientists, and engineers. The programs, which are available on the internet at www.pamir-integrate.com and are free for non-profit research use, are capable of following localized peaks and valleys of the integrand. Each program comes with a Message-Passing Interface (MPI) parallel version for cluster use as well as serial versions.The first chapter presents introductory material, similar to that on the PAMIR website, and the next is a "manual" giving much more detail on the use of the programs than is on the website. They are followed by many examples of performance benchmarks and comparisons with other programs, and a discussion of the computational integration aspects of PAMIR, in comparison with other methods in the literature. The final chapter provides details of the construction of the algorithms, while the Appendices give technical details and certain mathematical derivations.

These lecture notes provide a rapid, accessible introduction to Bayesian statistical methods. The course covers the fundamental philosophy and principles of Bayesian inference, including the reasoning behind the prior/likelihood model construction synonymous with Bayesian methods, through to advanced topics such as nonparametrics, Gaussian processes and latent factor models. These advanced modelling techniques can easily be applied using computer code samples written in Python and Stan which are integrated into the main text. Importantly, the reader will learn methods for assessing model fit, and to choose between rival modelling approaches.

This work addresses the notion of compression ratios greater than what has been known for random sequential strings in binary and larger radix-based systems as applied to those traditionally found in Kolmogorov complexity. A culmination of the author's decade-long research that began with his discovery of a compressible random sequential string, the book maintains a theoretical-statistical level of introduction suitable for mathematical physicists. It discusses the application of ternary-, quaternary-, and quinary-based systems in statistical communication theory, computing, and physics.

Written with medical statisticians and medical researchers in mind, this intermediate-level reference explores the use of SAS for analyzing medical data. Applied Medical Statistics Using SAS covers the whole range of modern statistical methods used in the analysis of medical data, including regression, analysis of variance and covariance, longitudinal and survival data analysis, missing data, generalized additive models (GAMs), and Bayesian methods. The book focuses on performing these analyses using SAS, the software package of choice for those analysing medical data.

Features

• Covers the planning stage of medical studies in detail; several chapters contain details of sample size estimation
• Illustrates methods of randomisation that might be employed for clinical trials
• Covers topics that have become of great importance in the 21st century, including Bayesian methods and multiple imputation

Its breadth and depth, coupled with the inclusion of all the SAS code, make this book ideal for practitioners as well as for a graduate class in biostatistics or public health.

Complete data sets, all the SAS code, and complete outputs can be found on an associated website: http: //support.sas.com/amsus

Multilevel and Longitudinal Modeling with IBM SPSS, Third Edition, demonstrates how to use the multilevel and longitudinal modeling techniques available in IBM SPSS Versions 25-27. Annotated screenshots with all relevant output provide readers with a step-by-step understanding of each technique as they are shown how to navigate the program. Throughout, diagnostic tools, data management issues, and related graphics are introduced. SPSS commands show the flow of the menu structure and how to facilitate model building, while annotated syntax is also available for those who prefer this approach. Extended examples illustrating the logic of model development and evaluation are included throughout the book, demonstrating the context and rationale of the research questions and the steps around which the analyses are structured. The book opens with the conceptual and methodological issues associated with multilevel and longitudinal modeling, followed by a discussion of SPSS data management techniques that facilitate working with multilevel, longitudinal, or cross-classified data sets. The next few chapters introduce the basics of multilevel modeling, developing a multilevel model, extensions of the basic two-level model (e.g., three-level models, models for binary and ordinal outcomes), and troubleshooting techniques for everyday-use programming and modeling problems along with potential solutions. Models for investigating individual and organizational change are next developed, followed by models with multivariate outcomes and, finally, models with cross-classified and multiple membership data structures. The book concludes with thoughts about ways to expand on the various multilevel and longitudinal modeling techniques introduced and issues (e.g., missing data, sample weights) to keep in mind in conducting multilevel analyses. Key features of the third edition: Thoroughly updated throughout to reflect IBM SPSS Versions 26-27. Introduction to fixed-effects regression for examining change over time where random-effects modeling may not be an optimal choice. Additional treatment of key topics specifically aligned with multilevel modeling (e.g., models with binary and ordinal outcomes). Expanded coverage of models with cross-classified and multiple membership data structures. Added discussion on model checking for improvement (e.g., examining residuals, locating outliers). Further discussion of alternatives for dealing with missing data and the use of sample weights within multilevel data structures. Supported by online data sets, the book's practical approach makes it an essential text for graduate-level courses on multilevel, longitudinal, latent variable modeling, multivariate statistics, or advanced quantitative techniques taught in departments of business, education, health, psychology, and sociology. The book will also prove appealing to researchers in these fields. The book is designed to provide an excellent supplement to Heck and Thomas's An Introduction to Multilevel Modeling Techniques, Fourth Edition; however, it can also be used with any multilevel or longitudinal modeling book or as a stand-alone text.

Programming Graphical User Interfaces with R introduces each of the major R packages for GUI programming: RGtk2, qtbase, Tcl/Tk, and gWidgets. With examples woven through the text as well as stand-alone demonstrations of simple yet reasonably complete applications, the book features topics especially relevant to statisticians who aim to provide a practical interface to functionality implemented in R. The book offers: A how-to guide for developing GUIs within R The fundamentals for users with limited knowledge of programming within R and other languages GUI design for specific functions or as learning tools The accompanying package, ProgGUIinR, includes the complete code for all examples as well as functions for browsing the examples from the respective chapters. Accessible to seasoned, novice, and occasional R users, this book shows that for many purposes, adding a graphical interface to one's work is not terribly sophisticated or time consuming.

For a variety of reasons, the MATLAB(r)-Java interface was never fully documented. This is really quite unfortunate: Java is one of the most widely used programming languages, having many times the number of programmers and programming resources as MATLAB. Also unfortunate is the popular claim that while MATLAB is a fine programming platform for prototyping, it is not suitable for real-world, modern-looking applications. Undocumented Secrets of MATLAB(r)-Java Programming aims to correct this misconception.

This book shows how using Java can significantly improve MATLAB program appearance and functionality, and that this can be done easily and even without any prior Java knowledge.

Readers are led step-by-step from simple to complex customizations. Code snippets, screenshots, and numerous online references are provided to enable the utilization of this book as both a sequential tutorial and as a random-access reference suited for immediate use. Java-savvy readers will find it easy to tailor code samples for their particular needs; for Java newcomers, an introduction to Java and numerous online references are provided.

This book demonstrates how

• The MATLAB programming environment relies on Java for numerous tasks, including networking, data-processing algorithms and graphical user-interface (GUI)
• We can use MATLAB for easy access to external Java functionality, either third-party or user-created
• Using Java, we can extensively customize the MATLAB environment and application GUI, enabling the creation of visually appealing and usable applications

With the advancement of statistical methodology inextricably linked to the use of computers, new methodological ideas must be translated into usable code and then numerically evaluated relative to competing procedures. In response to this, Statistical Computing in C++ and R concentrates on the writing of code rather than the development and study of numerical algorithms per se. The book discusses code development in C++ and R and the use of these symbiotic languages in unison. It emphasizes that each offers distinct features that, when used in tandem, can take code writing beyond what can be obtained from either language alone. The text begins with some basics of object-oriented languages, followed by a "boot-camp" on the use of C++ and R. The authors then discuss code development for the solution of specific computational problems that are relevant to statistics including optimization, numerical linear algebra, and random number generation. Later chapters introduce abstract data structures (ADTs) and parallel computing concepts. The appendices cover R and UNIX Shell programming. Features Includes numerous student exercises ranging from elementary to challenging Integrates both C++ and R for the solution of statistical computing problems Uses C++ code in R and R functions in C++ programs Provides downloadable programs, available from the authors' website The translation of a mathematical problem into its computational analog (or analogs) is a skill that must be learned, like any other, by actively solving relevant problems. The text reveals the basic principles of algorithmic thinking essential to the modern statistician as well as the fundamental skill of communicating with a computer through the use of the computer languages C++ and R. The book lays the foundation for original code development in a research environment.