Dealing with methods for sampling from posterior distributions and how to compute posterior quantities of interest using Markov chain Monte Carlo (MCMC) samples, this book addresses such topics as improving simulation accuracy, marginal posterior density estimation, estimation of normalizing constants, constrained parameter problems, highest posterior density interval calculations, computation of posterior modes, and posterior computations for proportional hazards models and Dirichlet process models. The authors also discuss model comparisons, including both nested and non-nested models, marginal likelihood methods, ratios of normalizing constants, Bayes factors, the Savage-Dickey density ratio, Stochastic Search Variable Selection, Bayesian Model Averaging, the reverse jump algorithm, and model adequacy using predictive and latent residual approaches. The book presents an equal mixture of theory and applications involving real data, and is intended as a graduate textbook or a reference book for a one-semester course at the advanced masters or Ph.D. level. It will also serve as a useful reference for applied or theoretical researchers as well as practitioners.

Recent advances in the understanding of star formation and evolution have been impressive and aspects of that knowledge are explored in this volume. The black hole stellar endpoints are studied and geodesic motion is explored. The emission of gravitational waves is featured due to their very recent experimental discovery.The second aspect of the text is space exploration which began 62 years ago with the Sputnik Earth satellite followed by the landing on the Moon just 50 years ago. Since then Mars has been explored remotely as well as flybys of the outer planets and probes which have escaped the solar system. The text explores many aspects of rocket travel. Finally possibilities for interstellar travel are discussed.All these topics are treated in a unified way using the Matlab App to combine text, figures, formulae and numeric input and output. In this way the reader may vary parameters and see the results in real time. That experience aids in building up an intuitive feel for the many specific problems given in this text.

This third edition of Braun and Murdoch's bestselling textbook now includes discussion of the use and design principles of the tidyverse packages in R, including expanded coverage of ggplot2, and R Markdown. The expanded simulation chapter introduces the Box-Muller and Metropolis-Hastings algorithms. New examples and exercises have been added throughout. This is the only introduction you'll need to start programming in R, the computing standard for analyzing data. This book comes with real R code that teaches the standards of the language. Unlike other introductory books on the R system, this book emphasizes portable programming skills that apply to most computing languages and techniques used to develop more complex projects. Solutions, datasets, and any errata are available from www.statprogr.science. Worked examples - from real applications - hundreds of exercises, and downloadable code, datasets, and solutions make a complete package for anyone working in or learning practical data science.

This book was first published in 2003. Combinatorica, an extension to the popular computer algebra system Mathematica (R), is the most comprehensive software available for teaching and research applications of discrete mathematics, particularly combinatorics and graph theory. This book is the definitive reference/user's guide to Combinatorica, with examples of all 450 Combinatorica functions in action, along with the associated mathematical and algorithmic theory. The authors cover classical and advanced topics on the most important combinatorial objects: permutations, subsets, partitions, and Young tableaux, as well as all important areas of graph theory: graph construction operations, invariants, embeddings, and algorithmic graph theory. In addition to being a research tool, Combinatorica makes discrete mathematics accessible in new and exciting ways to a wide variety of people, by encouraging computational experimentation and visualization. The book contains no formal proofs, but enough discussion to understand and appreciate all the algorithms and theorems it contains.

Bayesian Networks in R with Applications in Systems Biology is unique as it introduces the reader to the essential concepts in Bayesian network modeling and inference in conjunction with examples in the open-source statistical environment R. The level of sophistication is also gradually increased across the chapters with exercises and solutions for enhanced understanding for hands-on experimentation of the theory and concepts. The application focuses on systems biology with emphasis on modeling pathways and signaling mechanisms from high-throughput molecular data. Bayesian networks have proven to be especially useful abstractions in this regard. Their usefulness is especially exemplified by their ability to discover new associations in addition to validating known ones across the molecules of interest. It is also expected that the prevalence of publicly available high-throughput biological data sets may encourage the audience to explore investigating novel paradigms using the approaches presented in the book.

"MATLAB for Neuroscientists" serves as the only complete study manual and teaching resource for MATLAB, the globally accepted standard for scientific computing, in the neurosciences and psychology. This unique introduction can be used to learn the entire empirical and experimental process (including stimulus generation, experimental control, data collection, data analysis, modeling, and more), and the 2nd Edition continues to ensure that a wide variety of computational problems can be addressed in a single programming environment.

This updated edition features additional material on the creation of visual stimuli, advanced psychophysics, analysis of LFP data, choice probabilities, synchrony, and advanced spectral analysis. Users at a variety of levels-advanced undergraduates, beginning graduate students, and researchers looking to modernize their skills-will learn to design and implement their own analytical tools, and gain the fluency required to meet the computational needs of neuroscience practitioners.
The first complete volume on MATLAB focusing on neuroscience and psychology applicationsProblem-based approach with many examples from neuroscience and cognitive psychology using real dataIllustrated in full color throughout Careful tutorial approach, by authors who are award-winning educators with strong teaching experience

This edited survey book consists of 20 chapters showing application of Clifford algebra in quantum mechanics, field theory, spinor calculations, projective geometry, Hypercomplex algebra, function theory and crystallography. Many examples of computations performed with a variety of readily available software programs are presented in detail.

This is the first book to show the capabilities of Microsoft Excel to teach biological and life sciences statistics effectively. It is a step-by-step exercise-driven guide for students and practitioners who need to master Excel to solve practical science problems. If understanding statistics isn't your strongest suit, you are not especially mathematically-inclined, or if you are wary of computers, this is the right book for you. Excel, a widely available computer program for students and managers, is also an effective teaching and learning tool for quantitative analyses in science courses. Its powerful computational ability and graphical functions make learning statistics much easier than in years past. However, Excel 2007 for Biological and Life Sciences Statistics: A Guide to Solving Practical Problems is the first book to capitalize on these improvements by teaching students and managers how to apply Excel to statistical techniques necessary in their courses and work. Each chapter explains statistical formulas and directs the reader to use Excel commands to solve specific, easy-to-understand science problems. Practice problems are provided at the end of each chapter with their solutions in an appendix. Separately, there is a full Practice Test (with answers in an Appendix) that allows readers to test what they have learned.

S is a high-level language for manipulating, analysing and displaying

data. It forms the basis of two highly acclaimed and widely used data

analysis software systems, the commercial S-PLUS(r) and the Open

Source R. This book provides an in-depth guide to writing software in

the S language under either or both of those systems. It is intended

for readers who have some acquaintance with the S language and want to

know how to use it more effectively, for example to build re-usable

tools for streamlining routine data analysis or to implement new

statistical methods.

One of the outstanding strengths of the S language is the ease with

which it can be extended by users. S is a functional language, and

functions written by users are first-class objects treated in the same

way as functions provided by the system. S code is eminently readable

and so a good way to document precisely what algorithms were used, and

as much of the implementations are themselves written in S, they can be

studied as models and to understand their subtleties. The current

implementations also provide easy ways for S functions to call

compiled code written in C, Fortran and similar languages; this is

documented here in depth.

Increasingly S is being used for statistical or graphical analysis

within larger software systems or for whole vertical-market

applications. The interface facilities are most developed on

Windows(r) and these are covered with worked examples.

The authors have written the widely used Modern Applied Statistics

with S-PLUS, now in its third edition, and several software libraries

that enhance S-PLUS and R; these and the examples used in both books

are available on the Internet.

Dr. W.N. Venables is a senior Statistician with the CSIRO/CMIS

Environmetrics Project in Australia, having been at the Department of

Statistics, University of Adelaide for many years previously.

Professor B.D. Ripley holds the Chair of Applied Statistics at the

University of Oxford, and is the author of four other books on spatial

statistics, simulation, pattern recognition and neural networks. Both

authors are known and respected throughout the international S and R

communities, for their books, workshops, short courses, freely

available software and through their extensive contributions to the

S-news and R mailing lists.

Rcpp is the glue that binds the power and versatility of R with the speed and efficiency of C++. With Rcpp, the transfer of data between R and C++ is nearly seamless, and high-performance statistical computing is finally accessible to most R users. Rcpp should be part of every statistician's toolbox. -- Michael Braun, MIT Sloan School of Management

"Seamless R and C++ integration with Rcpp" is simply a wonderful book. For anyone who uses C/C++ and R, it is an indispensable resource. The writing is outstanding. A huge bonus is the section on applications. This section covers the matrix packages Armadillo and Eigen and the GNU Scientific Library as well as RInside which enables you to use R inside C++. These applications are what most of us need to know to really do scientific programming with R and C++. I love this book. -- Robert McCulloch, University of Chicago Booth School of Business

Rcpp is now considered an essential package for anybody doing serious computational research using R. Dirk's book is an excellent companion and takes the reader from a gentle introduction to more advanced applications via numerous examples and efficiency enhancing gems. The book is packed with all you might have ever wanted to know about Rcpp, its cousins (RcppArmadillo, RcppEigen .etc.), modules, package development and sugar. Overall, this book is a must-have on your shelf. -- Sanjog Misra, UCLA Anderson School of Management

The Rcpp package represents a major leap forward for scientific computations with R. With very few lines of C++ code, one has R's data structures readily at hand for further computations in C++. Hence, high-level numerical programming can be made in C++ almost as easily as in R, but often with a substantial speed gain. Dirk is a crucial person in these developments, and his book takes the reader from the first fragile steps on to using the full Rcpp machinery. A very recommended book -- Soren Hojsgaard," "Department of Mathematical Sciences, Aalborg University, Denmark

"Seamless R and C ++ Integration with Rcpp" provides the first comprehensive introduction to Rcpp. Rcpp has become the most widely-used language extension for R, and is deployed by over one-hundred different CRAN and BioConductor packages. Rcpp permits users to pass scalars, vectors, matrices, list or entire R objects back and forth between R and C++ with ease. This brings the depth of the R analysis framework together with the power, speed, and efficiency of C++.

Dirk Eddelbuettel has been a contributor to CRAN for over a decade and maintains around twenty packages. He is the Debian/Ubuntu maintainer for R and other quantitative software, edits the CRAN Task Views for Finance and High-Performance Computing, is a co-founder of the annual R/Finance conference, and an editor of the Journal of Statistical Software. He holds a Ph.D. in Mathematical Economics from EHESS (Paris), and works in Chicago as a Senior Quantitative Analyst.

"

"Fast Compact Algorithms and Software for Spline Smoothing" investigates algorithmic alternatives for computing cubic smoothing splines when the amount of smoothing is determined automatically by minimizing the generalized cross-validation score. These algorithms are based on Cholesky factorization, QR factorization, or the fast Fourier transform. All algorithms are implemented in MATLAB and are compared based on speed, memory use, and accuracy. An overall best algorithm is identified, which allows very large data sets to be processed quickly on a personal computer.

Accessible to a general audience with some background in statistics and computing Many examples and extended case studies Illustrations using R and Rstudio A true blend of statistics and computer science -- not just a grab bag of topics from each

A t the terminal seated, the answering tone: pond and temple bell. ODAY as in the past, statistical method is profoundly affected by T resources for numerical calculation and visual display. The main line of development of statistical methodology during the first half of this century was conditioned by, and attuned to, the mechanical desk calculator. Now statisticians may use electronic computers of various kinds in various modes, and the character of statistical science has changed accordingly. Some, but not all, modes of modern computation have a flexibility and immediacy reminiscent of the desk calculator. They preserve the virtues of the desk calculator, while immensely exceeding its scope. Prominent among these is the computer language and conversational computing system known by the initials APL. This book is addressed to statisticians. Its first aim is to interest them in using APL in their work-for statistical analysis of data, for numerical support of theoretical studies, for simulation of random processes. In Part A the language is described and illustrated with short examples of statistical calculations. Part B, presenting some more extended examples of statistical analysis of data, has also the further aim of suggesting the interplay of computing and theory that must surely henceforth be typical of the develop ment of statistical science."

Grimmett, Geoffrey: Percolation and disordered systems.- Kesten, Harry: Aspects of first passage percolation. "

Keith M. Ponting Speech Research Unit, DERA Malvern St. Andrew's Road, Great Malvern, Worcs. WR14 3PS, UK email: ponting

Accompanying the book, as with all TELOS sponsored publications, is an electronic component. In this case it is a DOS-Diskette produced by one of the coauthors, Paul Wellin. This diskette consists of "Mathematica "notebooks and packages which contain the codes for all examples and exercises in the book, as well as additional materials intended to extend many ideas covered in the text. It is of great value to teachers, students, and others using this book to learn how to effectively program with "Mathematica" .

Non-uniform random variate generation is an established research area in the intersection of mathematics, statistics and computer science. Although random variate generation with popular standard distributions have become part of every course on discrete event simulation and on Monte Carlo methods, the recent concept of universal (also called automatic or black-box) random variate generation can only be found dispersed in literature. This new concept has great practical advantages that are little known to most simulation practitioners. Being unique in its overall organization the book covers not only the mathematical and statistical theory, but also deals with the implementation of such methods. All algorithms introduced in the book are designed for practical use in simulation and have been coded and made available by the authors. Examples of possible applications of the presented algorithms (including option pricing, VaR and Bayesian statistics) are presented at the end of the book.

Algorithms for Computer Algebra is the first comprehensive textbook to be published on the topic of computational symbolic mathematics. The book first develops the foundational material from modern algebra that is required for subsequent topics. It then presents a thorough development of modern computational algorithms for such problems as multivariate polynomial arithmetic and greatest common divisor calculations, factorization of multivariate polynomials, symbolic solution of linear and polynomial systems of equations, and analytic integration of elementary functions. Numerous examples are integrated into the text as an aid to understanding the mathematical development. The algorithms developed for each topic are presented in a Pascal-like computer language. An extensive set of exercises is presented at the end of each chapter. Algorithms for Computer Algebra is suitable for use as a textbook for a course on algebraic algorithms at the third-year, fourth-year, or graduate level. Although the mathematical development uses concepts from modern algebra, the book is self-contained in the sense that a one-term undergraduate course introducing students to rings and fields is the only prerequisite assumed. The book also serves well as a supplementary textbook for a traditional modern algebra course, by presenting concrete applications to motivate the understanding of the theory of rings and fields.

This book deals with the performance analysis of closed queueing networks with general processing times and finite buffer spaces. It offers a detailed introduction to the problem and a comprehensive literature review. Two approaches to the performance of closed queueing networks are presented. One is an approximate decomposition approach, while the second is the first exact approach for finite-capacity networks with general processing times. In this Markov chain approach, queueing networks are analyzed by modeling the entire system as one Markov chain. As this approach is exact, it is well-suited both as a reference quantity for approximate procedures and as extension to other queueing networks. Moreover, for the first time, the exact distribution of the time between processing starts is provided.

The intensive use of automatic data acquisition system and the use of cloud computing for process monitoring have led to an increased occurrence of industrial processes that utilize statistical process control and capability analysis. These analyses are performed almost exclusively with multivariate methodologies. The aim of this Brief is to present the most important MSQC techniques developed in R language. The book is divided into two parts. The first part contains the basic R elements, an introduction to statistical procedures, and the main aspects related to Statistical Quality Control (SQC). The second part covers the construction of multivariate control charts, the calculation of Multivariate Capability Indices.

This Handbook gives a comprehensive snapshot of a field at the intersection of mathematics and computer science with applications in physics, engineering and education. Reviews 67 software systems and offers 100 pages on applications in physics, mathematics, computer science, engineering chemistry and education.

Automatic Graph Drawing is concerned with the layout of relational structures as they occur in Computer Science (Data Base Design, Data Mining, Web Mining), Bioinformatics (Metabolic Networks), Businessinformatics (Organization Diagrams, Event Driven Process Chains), or the Social Sciences (Social Networks).

In mathematical terms, such relational structures are modeled as graphs or more general objects such as hypergraphs, clustered graphs, or compound graphs. A variety of layout algorithms that are based on graph theoretical foundations have been developed in the last two decades and implemented in software systems.

After an introduction to the subject area and a concise treatment of the technical foundations for the subsequent chapters, this book features 14 chapters on state-of-the-art graph drawing software systems, ranging from general "tool boxes'' to customized software for various applications. These chapters are written by leading experts, they follow a uniform scheme and can be read independently from each other.

This brief offers a broad, yet concise, coverage of portfolio choice, containing both application-oriented and academic results, along with abundant pointers to the literature for further study. It cuts through many strands of the subject, presenting not only the classical results from financial economics but also approaches originating from information theory, machine learning and operations research. This compact treatment of the topic will be valuable to students entering the field, as well as practitioners looking for a broad coverage of the topic.

Molchanov, S.: Lectures on random media.- Zeitouni, Ofer: Random walks in random environment.-den Hollander, Frank: Random polymers "

Accurate and efficient computer algorithms for factoring matrices, solving linear systems of equations, and extracting eigenvalues and eigenvectors. Regardless of the software system used, the book describes and gives examples of the use of modern computer software for numerical linear algebra. It begins with a discussion of the basics of numerical computations, and then describes the relevant properties of matrix inverses, factorisations, matrix and vector norms, and other topics in linear algebra. The book is essentially self- contained, with the topics addressed constituting the essential material for an introductory course in statistical computing. Numerous exercises allow the text to be used for a first course in statistical computing or as supplementary text for various courses that emphasise computations.