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Books > Computing & IT > Computer software packages > Other software packages > Mathematical & statistical software
Practical Statistical Methods: A SAS Programming Approach presents a broad spectrum of statistical methods useful for researchers without an extensive statistical background. In addition to nonparametric methods, it covers methods for discrete and continuous data. Omitting mathematical details and complicated formulae, the text provides SAS programs to carry out the necessary analyses and draw appropriate inferences for common statistical problems. After introducing fundamental statistical concepts, the author describes methods used for quantitative data and continuous data following normal and nonnormal distributions. She then focuses on regression methodology, highlighting simple linear regression, logistic regression, and the proportional hazards model. The final chapter briefly discusses such miscellaneous topics as propensity scores, misclassification errors, interim analysis, conditional power, bootstrap, and jackknife. With SAS code and output integrated throughout, this book shows how to interpret data using SAS and illustrates the many statistical methods available for tackling problems in a range of fields, including the pharmaceutical industry and the social sciences.
An Introduction to Stata for Health Researchers, Fifth Edition updates this classic book that has become a standard reference for health researchers. As with previous editions, readers will learn to work effectively in Stata to perform data management, compute descriptive statistics, create meaningful graphs, fit regression models, and perform survival analysis. The fifth edition adds examples of performing power, precision, and sample-size analysis; working with Unicode characters; managing data with ICD-9 and ICD-10 codes; and creating customized tables. With many worked examples and downloadable datasets, this text is the ideal resource for hands-on learning, whether for students in a statistics course or for researchers in fields such as epidemiology, biostatistics, and public health who are learning to use Stata's tools for health research.
Methods of Statistical Model Estimation examines the most important and popular methods used to estimate parameters for statistical models and provide informative model summary statistics. Designed for R users, the book is also ideal for anyone wanting to better understand the algorithms used for statistical model fitting. The text presents algorithms for the estimation of a variety of regression procedures using maximum likelihood estimation, iteratively reweighted least squares regression, the EM algorithm, and MCMC sampling. Fully developed, working R code is constructed for each method. The book starts with OLS regression and generalized linear models, building to two-parameter maximum likelihood models for both pooled and panel models. It then covers a random effects model estimated using the EM algorithm and concludes with a Bayesian Poisson model using Metropolis-Hastings sampling. The book's coverage is innovative in several ways. First, the authors use executable computer code to present and connect the theoretical content. Therefore, code is written for clarity of exposition rather than stability or speed of execution. Second, the book focuses on the performance of statistical estimation and downplays algebraic niceties. In both senses, this book is written for people who wish to fit statistical models and understand them. See Professor Hilbe discuss the book.
The R language provides a rich environment for working with data, especially data to be used for statistical modeling or graphics. Coupled with the large variety of easily available packages, it allows access to both well-established and experimental statistical techniques. However techniques that might make sense in other languages are often very ine?cient in R, but, due to R's ?- ibility, it is often possible to implement these techniques in R. Generally, the problem with such techniques is that they do not scale properly; that is, as the problem size grows, the methods slow down at a rate that might be unexpected. The goal of this book is to present a wide variety of data - nipulation techniques implemented in R to take advantage of the way that R works, ratherthandirectlyresemblingmethodsusedinotherlanguages. Since this requires a basic notion of how R stores data, the ?rst chapter of the book is devoted to the fundamentals of data in R. The material in this chapter is a prerequisite for understanding the ideas introduced in later chapters. Since one of the ?rst tasks in any project involving data and R is getting the data into R in a way that it will be usable, Chapter 2 covers reading data from a variety of sources (text ?les, spreadsheets, ?les from other programs, etc. ), as well as saving R objects both in native form and in formats that other programs will be able to work with.
The information contained in this book has served as the basis for a graduate-level biostatistics class at the University of North Carolina at Chapel Hill. The book focuses in the General Linear Model (GLM) theory, stated in matrix terms, which provides a more compact, clear, and unified presentation of regression of ANOVA than do traditional sums of squares and scalar equations. The book contains a balanced treatment of regression and ANOVA yet is very compact. Reflecting current computational practice, most sums of squares formulas and associated theory, especially in ANOVA, are not included. The text contains almost no proofs, despite the presence of a large number of basic theoretical results. Many numerical examples are provided, and include both the SAS code and equivalent mathematical representation needed to produce the outputs that are presented. All exercises involve only “real” data, collected in the course of scientific research. The book is divided into sections covering the following topics:
State space models have gained tremendous popularity in recent years in as disparate fields as engineering, economics, genetics and ecology. After a detailed introduction to general state space models, this book focuses on dynamic linear models, emphasizing their Bayesian analysis. Whenever possible it is shown how to compute estimates and forecasts in closed form; for more complex models, simulation techniques are used. A final chapter covers modern sequential Monte Carlo algorithms. The book illustrates all the fundamental steps needed to use dynamic linear models in practice, using R. Many detailed examples based on real data sets are provided to show how to set up a specific model, estimate its parameters, and use it for forecasting. All the code used in the book is available online. No prior knowledge of Bayesian statistics or time series analysis is required, although familiarity with basic statistics and R is assumed.
R for College Mathematics and Statistics encourages the use of R in mathematics and statistics courses. Instructors are no longer limited to ``nice'' functions in calculus classes. They can require reports and homework with graphs. They can do simulations and experiments. R can be useful for student projects, for creating graphics for teaching, as well as for scholarly work. This book presents ways R, which is freely available, can enhance the teaching of mathematics and statistics. R has the potential to help students learn mathematics due to the need for precision, understanding of symbols and functions, and the logical nature of code. Moreover, the text provides students the opportunity for experimenting with concepts in any mathematics course. Features: Does not require previous experience with R Promotes the use of R in typical mathematics and statistics course work Organized by mathematics topics Utilizes an example-based approach Chapters are largely independent of each other
After the great expansion of genome-wide association studies, their scientific methodology and, notably, their data analysis has matured in recent years, and they are a keystone in large epidemiological studies. Newcomers to the field are confronted with a wealth of data, resources and methods. This book presents current methods to perform informative analyses using real and illustrative data with established bioinformatics tools and guides the reader through the use of publicly available data. Includes clear, readable programming codes for readers to reproduce and adapt to their own data. Emphasises extracting biologically meaningful associations between traits of interest and genomic, transcriptomic and epigenomic data Uses up-to-date methods to exploit omic data Presents methods through specific examples and computing sessions Supplemented by a website, including code, datasets, and solutions
The R Companion to Elementary Applied Statistics includes traditional applications covered in elementary statistics courses as well as some additional methods that address questions that might arise during or after the application of commonly used methods. Beginning with basic tasks and computations with R, readers are then guided through ways to bring data into R, manipulate the data as needed, perform common statistical computations and elementary exploratory data analysis tasks, prepare customized graphics, and take advantage of R for a wide range of methods that find use in many elementary applications of statistics. Features: Requires no familiarity with R or programming to begin using this book. Can be used as a resource for a project-based elementary applied statistics course, or for researchers and professionals who wish to delve more deeply into R. Contains an extensive array of examples that illustrate ideas on various ways to use pre-packaged routines, as well as on developing individualized code. Presents quite a few methods that may be considered non-traditional, or advanced. Includes accompanying carefully documented script files that contain code for all examples presented, and more. R is a powerful and free product that is gaining popularity across the scientific community in both the professional and academic arenas. Statistical methods discussed in this book are used to introduce the fundamentals of using R functions and provide ideas for developing further skills in writing R code. These ideas are illustrated through an extensive collection of examples. About the Author: Christopher Hay-Jahans received his Doctor of Arts in mathematics from Idaho State University in 1999. After spending three years at University of South Dakota, he moved to Juneau, Alaska, in 2002 where he has taught a wide range of undergraduate courses at University of Alaska Southeast.
The OMDoc (Open Mathematical Documents) format is a content markup scheme for collections of mathematical documents, including articles, textbooks, interactive books, and courses. OMDoc also serves as the content language for agent communication of mathematical services and a mathematical software bus. This documentation describes version 1.2 of the OMDoc system, the final and mature release of OMDoc 1. The system features modularized language design, OPENMATH and MATHML for the representation of mathematical objects, and has been employed and validated in various applications. Besides a complete and rigorous specification of the OMDoc document format, this book presents an OMDoc primer with paradigmatic examples for many kinds of mathematical documents. Furthermore, various applications, projects, and tool support for OMDoc are discussed. The book will become essential reading for all working mathematicians and mathematics students aspiring to take part in the new worlds of shared mathematical knowledge.
No book is born in a vacuum. There must always be somebody who needs the book, somebody who will read and use it, and somebody who will write it. I walked with the idea of this book for a long time. However, its final concept came into reality during my lectures, in February 2005, at the Universiti Malaysia Sabah in Borneo. I realized that my students needed a bit more than just my lectures. They needed a text that they could follow during lab sessions or after classes so they could learn at any time, at their own pace. Therefore, I decided to write a small book with just a few chapters covering the different areas of applying the Computer Algebra System called MuPAD in different areas of mathematics. I intended each chapter to be short enough to be covered in a reasonably short time, about 2 to 4 hours. Another important objective was to have each chapter completely independent of the others, so that the readers could easily select and read the chapters that they needed the most, without being forced to read the whole book. There was one obstacle for such a concept-the large number of graphics I used to visualize mathematics. Therefore, I finally decided to write a separate chapter covering the major concepts of MuPAD graphics. The graphics chapter, together with the introductory chapter, forms the base for all the remaining chapters.
This book constitutes the refereed proceedings of the Second International Congress on Mathematical Software, ICMS 2006, held in Castro Urdiales, Spain in September 2006. The 45 revised full papers presented were carefully reviewed and selected for presentation. The papers are organized in topical sections on new developments on computer algebra packages, interfacing computer algebra on mathematical visualization, software for algebraic geometry and related topics, number-theoretical software, methods in computational number theory, free software for computer algebra, software for optimization on geometric computation, methods and software for computing mathematical functions, access to mathematics on the Web, and general issues.
Praise for the first edition: "One of my biggest complaints when I teach introductory statistics classes is that it takes me most of the semester to get to the good stuff-inferential statistics. The author manages to do this very quickly....if one were looking for a book that efficiently covers basic statistical methodology and also introduces statistical software [this text] fits the bill." -The American Statistician Applied Statistical Inference with MINITAB, Second Edition distinguishes itself from other introductory statistics textbooks by focusing on the applications of statistics without compromising mathematical rigor. It presents the material in a seamless step-by-step approach so that readers are first introduced to a topic, given the details of the underlying mathematical foundations along with a detailed description of how to interpret the findings, and are shown how to use the statistical software program Minitab to perform the same analysis. Gives readers a solid foundation in how to apply many different statistical methods. MINITAB is fully integrated throughout the text. Includes fully worked out examples so students can easily follow the calculations. Presents many new topics such as one- and two-sample variances, one- and two-sample Poisson rates, and more nonparametric statistics. Features mostly new exercises as well as the addition of Best Practices sections that describe some common pitfalls and provide some practical advice on statistical inference. This book is written to be user-friendly for students and practitioners who are not experts in statistics, but who want to gain a solid understanding of basic statistical inference. This book is oriented towards the practical use of statistics. The examples, discussions, and exercises are based on data and scenarios that are common to students in their everyday lives.
This innovative textbook presents material for a course on modern statistics that incorporates Python as a pedagogical and practical resource. Drawing on many years of teaching and conducting research in various applied and industrial settings, the authors have carefully tailored the text to provide an ideal balance of theory and practical applications. Numerous examples and case studies are incorporated throughout, and comprehensive Python applications are illustrated in detail. A custom Python package is available for download, allowing students to reproduce these examples and explore others. The first chapters of the text focus on analyzing variability, probability models, and distribution functions. Next, the authors introduce statistical inference and bootstrapping, and variability in several dimensions and regression models. The text then goes on to cover sampling for estimation of finite population quantities and time series analysis and prediction, concluding with two chapters on modern data analytic methods. Each chapter includes exercises, data sets, and applications to supplement learning. Modern Statistics: A Computer-Based Approach with Python is intended for a one- or two-semester advanced undergraduate or graduate course. Because of the foundational nature of the text, it can be combined with any program requiring data analysis in its curriculum, such as courses on data science, industrial statistics, physical and social sciences, and engineering. Researchers, practitioners, and data scientists will also find it to be a useful resource with the numerous applications and case studies that are included. A second, closely related textbook is titled Industrial Statistics: A Computer-Based Approach with Python. It covers topics such as statistical process control, including multivariate methods, the design of experiments, including computer experiments and reliability methods, including Bayesian reliability. These texts can be used independently or for consecutive courses. The mistat Python package can be accessed at https://gedeck.github.io/mistat-code-solutions/ModernStatistics/ "In this book on Modern Statistics, the last two chapters on modern analytic methods contain what is very popular at the moment, especially in Machine Learning, such as classifiers, clustering methods and text analytics. But I also appreciate the previous chapters since I believe that people using machine learning methods should be aware that they rely heavily on statistical ones. I very much appreciate the many worked out cases, based on the longstanding experience of the authors. They are very useful to better understand, and then apply, the methods presented in the book. The use of Python corresponds to the best programming experience nowadays. For all these reasons, I think the book has also a brilliant and impactful future and I commend the authors for that." Professor Fabrizio RuggeriResearch Director at the National Research Council, ItalyPresident of the International Society for Business and Industrial Statistics (ISBIS)Editor-in-Chief of Applied Stochastic Models in Business and Industry (ASMBI)
This book constitutes the thoroughly refereed post-proceedings of the PASCAL (pattern analysis, statistical modelling and computational learning) Statistical and Optimization Perspectives Workshop on Subspace, Latent Structure and Feature Selection techniques, SLSFS 2005. The 9 revised full papers presented together with 5 invited papers reflect the key approaches that have been developed for subspace identification and feature selection using dimension reduction techniques, subspace methods, random projection methods, among others.
TheInternationalConferenceonMathematicalKnowledgeManagementhasnow reached its third edition, creating and establishing an original and stimulating scienti?ccommunitytransversaltomanydi?erent?eldsandresearchtopics. The broad goal of MKM is the exploration of innovative, semantically enriched, d- ital encodings of mathematical information, and the study of new services and tools exploiting the machine-understandable nature of the information. MKM is naturally located in the border area between digital libraries and the mec- nization of mathematics, devoting a particular interest to the new developments in information technology, and fostering their application to the realm of ma- ematical information. The conference is meant to be a forum for presenting, discussing and comparing new tools and systems, standardization e?orts, cri- calsurveys, largeexperiments, andcasestudies. Atpresent, wearestillgettingto knoweachother, tounderstandtheworkdonebyotherpeople, andthepotenti- ities o?ered by their work to our own research activity. However, the conference is rapidly acquiring scienti?c strength and academic interest, attracting more and more people and research groups, and o?ering a challenging alternative to older, more conservative conferences. July 2004 Andrea Asperti Grzegorz Bancerek Andrzej Trybulec Organization MKM 2004 was organized by the Institute of Computer Science, University of Bia lystokinco-operationwiththeFacultyofComputerScience, Bia lystokTe- nical University and the Association of Mizar Users. Program Committee Andrzej Trybulec (Chair) University of Bia lystok, Poland Andrew A. Adams University of Reading, UK Andrea Asperti University of Bologna, Italy Bruno Buchberger RISC Linz, Austria Roy McCasland University of Edinburgh, UK James Davenport University of Bath, UK Will
Statistical computing provides the link between statistical theory and applied statistics. The content of the book covers all aspects of this link, from the development and implementation of new statistical ideas to user experiences and software evaluation. The proceedings should appeal to anyone working in statistics and using computers, whether in universities, industrial companies, government agencies, research institutes or as software developers
This book explains basic principles of MuPAD commands. It teaches how to write simple programs and develop interactive environments for teaching mathematics. The text gives a large number of useful examples from different areas of undergraduate mathematics developed by the author during his long teaching experience. All the book examples are available online. Flash, SVG and JVX formats are used to display interactive and animated graphics.
In biological research, the amount of data available to researchers has increased so much over recent years, it is becoming increasingly difficult to understand the current state of the art without some experience and understanding of data analytics and bioinformatics. An Introduction to Bioinformatics with R: A Practical Guide for Biologists leads the reader through the basics of computational analysis of data encountered in modern biological research. With no previous experience with statistics or programming required, readers will develop the ability to plan suitable analyses of biological datasets, and to use the R programming environment to perform these analyses. This is achieved through a series of case studies using R to answer research questions using molecular biology datasets. Broadly applicable statistical methods are explained, including linear and rank-based correlation, distance metrics and hierarchical clustering, hypothesis testing using linear regression, proportional hazards regression for survival data, and principal component analysis. These methods are then applied as appropriate throughout the case studies, illustrating how they can be used to answer research questions. Key Features: * Provides a practical course in computational data analysis suitable for students or researchers with no previous exposure to computer programming. * Describes in detail the theoretical basis for statistical analysis techniques used throughout the textbook, from basic principles * Presents walk-throughs of data analysis tasks using R and example datasets. All R commands are presented and explained in order to enable the reader to carry out these tasks themselves. * Uses outputs from a large range of molecular biology platforms including DNA methylation and genotyping microarrays; RNA-seq, genome sequencing, ChIP-seq and bisulphite sequencing; and high-throughput phenotypic screens. * Gives worked-out examples geared towards problems encountered in cancer research, which can also be applied across many areas of molecular biology and medical research. This book has been developed over years of training biological scientists and clinicians to analyse the large datasets available in their cancer research projects. It is appropriate for use as a textbook or as a practical book for biological scientists looking to gain bioinformatics skills.
Starting from a basic knowledge of mathematics and mechanics gained in standard foundation classes, "Theory of Lift: Introductory Computational Aerodynamics in MATLAB/Octave" takes the reader conceptually through from the fundamental mechanics of lift to the stage of actually being able to make practical calculations and predictions of the coefficient of lift for realistic wing profile and planform geometries. The classical framework and methods of aerodynamics are covered in detail and the reader is shown how they may be used to develop simple yet powerful MATLAB or Octave programs that accurately predict and visualise the dynamics of real wing shapes, using lumped vortex, panel, and vortex lattice methods. This book contains all the mathematical development and formulae required in standard incompressible aerodynamics as well as dozens of small but complete working programs which can be put to use immediately using either the popular MATLAB or free Octave computional modelling packages. Key features: Synthesizes the classical foundations of aerodynamics with hands-on computation, emphasizing interactivity and visualization.Includes complete source code for all programs, all listings having been tested for compatibility with both MATLAB and Octave.Companion website (www.wiley.com/go/mcbain) hosting codes and solutions. "Theory of Lift: Introductory Computational Aerodynamics in MATLAB/Octave" is an introductory text for graduate and senior undergraduate students on aeronautical and aerospace engineering courses and also forms a valuable reference for engineers and designers.
For problems that require extensive computation, a C++ program can race through billions of examples faster than most other computing choices. C++ enables mathematicians of virtually any discipline to create programs to meet their needs quickly, and is available on most computer systems at no cost. C++ for Mathematicians: An Introduction for Students and Professionals accentuates C++ concepts that are most valuable for pure and applied mathematical research. This is the first book available on C++ programming that is written specifically for a mathematical audience; it omits the language's more obscure features in favor of the aspects of greatest utility for mathematical work. The author explains how to use C++ to formulate conjectures, create images and diagrams, verify proofs, build mathematical structures, and explore myriad examples. Emphasizing the essential role of practice as part of the learning process, the book is ideally designed for undergraduate coursework as well as self-study. Each chapter provides many problems and solutions which complement the text and enable you to learn quickly how to apply them to your own problems. Accompanying downloadable resources provide all numbered programs so that readers can easily use or adapt the code as needed. Presenting clear explanations and examples from the world of mathematics that develop concepts from the ground up, C++ for Mathematicians can be used again and again as a resource for applying C++ to problems that range from the basic to the complex.
Arguably the strongest addition to numerical finance of the past decade, Algorithmic Adjoint Differentiation (AAD) is the technology implemented in modern financial software to produce thousands of accurate risk sensitivities, within seconds, on light hardware. AAD recently became a centerpiece of modern financial systems and a key skill for all quantitative analysts, developers, risk professionals or anyone involved with derivatives. It is increasingly taught in Masters and PhD programs in finance. Danske Bank's wide scale implementation of AAD in its production and regulatory systems won the In-House System of the Year 2015 Risk award. The Modern Computational Finance books, written by three of the very people who designed Danske Bank's systems, offer a unique insight into the modern implementation of financial models. The volumes combine financial modelling, mathematics and programming to resolve real life financial problems and produce effective derivatives software. This volume is a complete, self-contained learning reference for AAD, and its application in finance. AAD is explained in deep detail throughout chapters that gently lead readers from the theoretical foundations to the most delicate areas of an efficient implementation, such as memory management, parallel implementation and acceleration with expression templates. The book comes with professional source code in C++, including an efficient, up to date implementation of AAD and a generic parallel simulation library. Modern C++, high performance parallel programming and interfacing C++ with Excel are also covered. The book builds the code step-by-step, while the code illustrates the concepts and notions developed in the book.
Age-Period-Cohort analysis has a wide range of applications, from chronic disease incidence and mortality data in public health and epidemiology, to many social events (birth, death, marriage, etc) in social sciences and demography, and most recently investment, healthcare and pension contribution in economics and finance. Although APC analysis has been studied for the past 40 years and a lot of methods have been developed, the identification problem has been a major hurdle in analyzing APC data, where the regression model has multiple estimators, leading to indetermination of parameters and temporal trends. A Practical Guide to Age-Period Cohort Analysis: The Identification Problem and Beyond provides practitioners a guide to using APC models as well as offers graduate students and researchers an overview of the current methods for APC analysis while clarifying the confusion of the identification problem by explaining why some methods address the problem well while others do not. Features * Gives a comprehensive and in-depth review of models and methods in APC analysis. * Provides an in-depth explanation of the identification problem and statistical approaches to addressing the problem and clarifying the confusion. * Utilizes real data sets to illustrate different data issues that have not been addressed in the literature, including unequal intervals in age and period groups, etc. Contains step-by-step modeling instruction and R programs to demonstrate how to conduct APC analysis and how to conduct prediction for the future Reflects the most recent development in APC modeling and analysis including the intrinsic estimator Wenjiang Fu is a professor of statistics at the University of Houston. Professor Fu's research interests include modeling big data, applied statistics research in health and human genome studies, and analysis of complex economic and social science data.
Most biologists use nonlinear regression more than any other statistical technique, but there are very few places to learn about curve-fitting. This book, by the author of the very successful Intuitive Biostatistics, addresses this relatively focused need of an extraordinarily broad range of scientists.
This open access book provides insights into the novel Locally Refined B-spline (LR B-spline) surface format, which is suited for representing terrain and seabed data in a compact way. It provides an alternative to the well know raster and triangulated surface representations. An LR B-spline surface has an overall smooth behavior and allows the modeling of local details with only a limited growth in data volume. In regions where many data points belong to the same smooth area, LR B-splines allow a very lean representation of the shape by locally adapting the resolution of the spline space to the size and local shape variations of the region. The iterative method can be modified to improve the accuracy in particular domains of a point cloud. The use of statistical information criterion can help determining the optimal threshold, the number of iterations to perform as well as some parameters of the underlying mathematical functions (degree of the splines, parameter representation). The resulting surfaces are well suited for analysis and computing secondary information such as contour curves and minimum and maximum points. Also deformation analysis are potential applications of fitting point clouds with LR B-splines. |
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