About this book * Gives the reader hands on example-base experience for simulating dynamical models in MATLAB (R)/Simulink (R) and animating them in VRML * More than 150 images describe each step in the model realizations helping readers to understand them visually * Diverse examples and profound problem treatment enable the reader to animate complex dynamical problems m-files, Simulink models, VRML files and jpegs available for download provide full solutions for the end-of-chapter problems Virtual Reality and Animation for MATLAB (R) and Simulink (R) Users demonstrates the simulation and animation of physical systems using the MATLAB (R) Virtual Reality Toolbox (virtual models are created in V-Realm Builder). The book is divided into two parts; the first addresses MATLAB (R) and the second Simulink (R). The presentation is problem-based with each chapter teaching the reader a group of essential principles in the context of a step-by-step solution to a particular issue. Examples of the systems covered include mass-spring-dampers, a crank-slider mechanism and a moving vehicle. The examples are given in ascending level of difficulty and contain MATLAB (R)/Simulink (R) codes deliberately simplified so that readers can focus on: * understanding how to link a 3-d virtual scene to MATLAB (R)/Simulink (R); and * manipulating the 3-d virtual scene in MATLAB (R)/Simulink (R). When studied in sequence, the chapters of this text form a coherent whole enabling the reader to gain a thorough expertise in virtual simulation and animation of dynamical models using MATLAB (R)/Simulink (R). Individual chapters stand on their own, however, so that readers interested in a particular system can concentrate on it easily. Problems are provided in each chapter to give practice in the techniques demonstrated and to extend the range of the systems studied, for example, into the control sphere. Solution code for these problems can be downloaded from insert URL. Whether modeling the dynamics of a simple pendulum, a robot arm or a moving car, animation of a dynamical model can enliven and encourage understanding of mechanical systems and thus contribute to control design. Virtual Reality and Animation for MATLAB (R) and Simulink (R) Users will be instructive and interesting to anyone, researcher or student, working with the dynamics of physical systems. Readers are assumed to have some familiarity with MATLAB (R).

Using the same accessible, hands-on approach as its best-selling predecessor, the Handbook of Univariate and Multivariate Data Analysis with IBM SPSS, Second Edition explains how to apply statistical tests to experimental findings, identify the assumptions underlying the tests, and interpret the findings. This second edition now covers more topics and has been updated with the SPSS statistical package for Windows. New to the Second Edition Three new chapters on multiple discriminant analysis, logistic regression, and canonical correlation New section on how to deal with missing data Coverage of tests of assumptions, such as linearity, outliers, normality, homogeneity of variance-covariance matrices, and multicollinearity Discussions of the calculation of Type I error and the procedure for testing statistical significance between two correlation coefficients obtained from two samples Expanded coverage of factor analysis, path analysis (test of the mediation hypothesis), and structural equation modeling Suitable for both newcomers and seasoned researchers in the social sciences, the handbook offers a clear guide to selecting the right statistical test, executing a wide range of univariate and multivariate statistical tests via the Windows and syntax methods, and interpreting the output results. The SPSS syntax files used for executing the statistical tests can be found in the appendix. Data sets employed in the examples are available on the book's CRC Press web page.

A start-to-finish guide to one of the most useful programming languages for researchers in a variety of fields In the newly revised Third Edition of The R Book, a team of distinguished teachers and researchers delivers a user-friendly and comprehensive discussion of foundational and advanced topics in the R software language, which is used widely in science, engineering, medicine, economics, and other fields. The book is designed to be used as both a complete text--readable from cover to cover--and as a reference manual for practitioners seeking authoritative guidance on particular topics. This latest edition offers instruction on the use of the RStudio GUI, an easy-to-use environment for those new to R. It provides readers with a complete walkthrough of the R language, beginning at a point that assumes no prior knowledge of R and very little previous knowledge of statistics. Readers will also find: A thorough introduction to fundamental concepts in statistics and step-by-step roadmaps to their implementation in R; Comprehensive explorations of worked examples in R; A complementary companion website with downloadable datasets that are used in the book; In-depth examination of essential R packages. Perfect for undergraduate and postgraduate students of science, engineering, medicine economics, and geography, The R Book will also earn a place in the libraries of social sciences professionals.

Second Edition

Methods of Statistical Model Estimation examines the most important and popular methods used to estimate parameters for statistical models and provide informative model summary statistics. Designed for R users, the book is also ideal for anyone wanting to better understand the algorithms used for statistical model fitting.

The text presents algorithms for the estimation of a variety of regression procedures using maximum likelihood estimation, iteratively reweighted least squares regression, the EM algorithm, and MCMC sampling. Fully developed, working R code is constructed for each method. The book starts with OLS regression and generalized linear models, building to two-parameter maximum likelihood models for both pooled and panel models. It then covers a random effects model estimated using the EM algorithm and concludes with a Bayesian Poisson model using Metropolis-Hastings sampling.

The book's coverage is innovative in several ways. First, the authors use executable computer code to present and connect the theoretical content. Therefore, code is written for clarity of exposition rather than stability or speed of execution. Second, the book focuses on the performance of statistical estimation and downplays algebraic niceties. In both senses, this book is written for people who wish to fit statistical models and understand them.

See Professor Hilbe discuss the book.

* Targests readers with a background in programming, interested in an introduction/refresher in statistical hypothesis testing * Uses Python throughout * Provides the reader with the opportunity of using the book whenever needed rather than following a sequential path.

PAMIR (Parameterized Adaptive Multidimensional Integration Routines) is a suite of Fortran programs for multidimensional numerical integration over hypercubes, simplexes, and hyper-rectangles in general dimension p, intended for use by physicists, applied mathematicians, computer scientists, and engineers. The programs, which are available on the internet at www.pamir-integrate.com and are free for non-profit research use, are capable of following localized peaks and valleys of the integrand. Each program comes with a Message-Passing Interface (MPI) parallel version for cluster use as well as serial versions.The first chapter presents introductory material, similar to that on the PAMIR website, and the next is a "manual" giving much more detail on the use of the programs than is on the website. They are followed by many examples of performance benchmarks and comparisons with other programs, and a discussion of the computational integration aspects of PAMIR, in comparison with other methods in the literature. The final chapter provides details of the construction of the algorithms, while the Appendices give technical details and certain mathematical derivations.

PAMIR (Parameterized Adaptive Multidimensional Integration Routines) is a suite of Fortran programs for multidimensional numerical integration over hypercubes, simplexes, and hyper-rectangles in general dimension p, intended for use by physicists, applied mathematicians, computer scientists, and engineers. The programs, which are available on the internet at www.pamir-integrate.com and are free for non-profit research use, are capable of following localized peaks and valleys of the integrand. Each program comes with a Message-Passing Interface (MPI) parallel version for cluster use as well as serial versions.The first chapter presents introductory material, similar to that on the PAMIR website, and the next is a "manual" giving much more detail on the use of the programs than is on the website. They are followed by many examples of performance benchmarks and comparisons with other programs, and a discussion of the computational integration aspects of PAMIR, in comparison with other methods in the literature. The final chapter provides details of the construction of the algorithms, while the Appendices give technical details and certain mathematical derivations.

This work addresses the notion of compression ratios greater than what has been known for random sequential strings in binary and larger radix-based systems as applied to those traditionally found in Kolmogorov complexity. A culmination of the author's decade-long research that began with his discovery of a compressible random sequential string, the book maintains a theoretical-statistical level of introduction suitable for mathematical physicists. It discusses the application of ternary-, quaternary-, and quinary-based systems in statistical communication theory, computing, and physics.

Basic Statistics provides an accessible and comprehensive introduction to statistics using the free, state-of-the-art, powerful software program R. This book is designed to both introduce students to key concepts in statistics and to provide simple instructions for using R. This concise book: *Teaches essential concepts in statistics, assuming little background knowledge on the part of the reader *Introduces students to R with as few sub-commands as possible for ease of use *Provides practical examples from the educational, behavioral, and social sciences With clear explanations of statistical processes and step-by-step commands in R, Basic Statistics will appeal to students and professionals across the social and behavioral sciences.

Basic Statistics provides an accessible and comprehensive introduction to statistics using the free, state-of-the-art, powerful software program R. This book is designed to both introduce students to key concepts in statistics and to provide simple instructions for using R. This concise book: .Teaches essential concepts in statistics, assuming little background knowledge on the part of the reader .Introduces students to R with as few sub-commands as possible for ease of use .Provides practical examples from the educational, behavioral, and social sciences With clear explanations of statistical processes and step-by-step commands in R, Basic Statistics will appeal to students and professionals across the social and behavioral sciences.

Written with medical statisticians and medical researchers in mind, this intermediate-level reference explores the use of SAS for analyzing medical data. Applied Medical Statistics Using SAS covers the whole range of modern statistical methods used in the analysis of medical data, including regression, analysis of variance and covariance, longitudinal and survival data analysis, missing data, generalized additive models (GAMs), and Bayesian methods. The book focuses on performing these analyses using SAS, the software package of choice for those analysing medical data.

Features

• Covers the planning stage of medical studies in detail; several chapters contain details of sample size estimation
• Illustrates methods of randomisation that might be employed for clinical trials
• Covers topics that have become of great importance in the 21st century, including Bayesian methods and multiple imputation

Its breadth and depth, coupled with the inclusion of all the SAS code, make this book ideal for practitioners as well as for a graduate class in biostatistics or public health.

Complete data sets, all the SAS code, and complete outputs can be found on an associated website: http: //support.sas.com/amsus

Programming Graphical User Interfaces with R introduces each of the major R packages for GUI programming: RGtk2, qtbase, Tcl/Tk, and gWidgets. With examples woven through the text as well as stand-alone demonstrations of simple yet reasonably complete applications, the book features topics especially relevant to statisticians who aim to provide a practical interface to functionality implemented in R. The book offers: A how-to guide for developing GUIs within R The fundamentals for users with limited knowledge of programming within R and other languages GUI design for specific functions or as learning tools The accompanying package, ProgGUIinR, includes the complete code for all examples as well as functions for browsing the examples from the respective chapters. Accessible to seasoned, novice, and occasional R users, this book shows that for many purposes, adding a graphical interface to one's work is not terribly sophisticated or time consuming.

For a variety of reasons, the MATLAB(r)-Java interface was never fully documented. This is really quite unfortunate: Java is one of the most widely used programming languages, having many times the number of programmers and programming resources as MATLAB. Also unfortunate is the popular claim that while MATLAB is a fine programming platform for prototyping, it is not suitable for real-world, modern-looking applications. Undocumented Secrets of MATLAB(r)-Java Programming aims to correct this misconception.

This book shows how using Java can significantly improve MATLAB program appearance and functionality, and that this can be done easily and even without any prior Java knowledge.

Readers are led step-by-step from simple to complex customizations. Code snippets, screenshots, and numerous online references are provided to enable the utilization of this book as both a sequential tutorial and as a random-access reference suited for immediate use. Java-savvy readers will find it easy to tailor code samples for their particular needs; for Java newcomers, an introduction to Java and numerous online references are provided.

This book demonstrates how

• The MATLAB programming environment relies on Java for numerous tasks, including networking, data-processing algorithms and graphical user-interface (GUI)
• We can use MATLAB for easy access to external Java functionality, either third-party or user-created
• Using Java, we can extensively customize the MATLAB environment and application GUI, enabling the creation of visually appealing and usable applications

With the advancement of statistical methodology inextricably linked to the use of computers, new methodological ideas must be translated into usable code and then numerically evaluated relative to competing procedures. In response to this, Statistical Computing in C++ and R concentrates on the writing of code rather than the development and study of numerical algorithms per se. The book discusses code development in C++ and R and the use of these symbiotic languages in unison. It emphasizes that each offers distinct features that, when used in tandem, can take code writing beyond what can be obtained from either language alone. The text begins with some basics of object-oriented languages, followed by a "boot-camp" on the use of C++ and R. The authors then discuss code development for the solution of specific computational problems that are relevant to statistics including optimization, numerical linear algebra, and random number generation. Later chapters introduce abstract data structures (ADTs) and parallel computing concepts. The appendices cover R and UNIX Shell programming. Features Includes numerous student exercises ranging from elementary to challenging Integrates both C++ and R for the solution of statistical computing problems Uses C++ code in R and R functions in C++ programs Provides downloadable programs, available from the authors' website The translation of a mathematical problem into its computational analog (or analogs) is a skill that must be learned, like any other, by actively solving relevant problems. The text reveals the basic principles of algorithmic thinking essential to the modern statistician as well as the fundamental skill of communicating with a computer through the use of the computer languages C++ and R. The book lays the foundation for original code development in a research environment.

There is a huge amount of literature on statistical models for the prediction of survival after diagnosis of a wide range of diseases like cancer, cardiovascular disease, and chronic kidney disease. Current practice is to use prediction models based on the Cox proportional hazards model and to present those as static models for remaining lifetime after diagnosis or treatment. In contrast, Dynamic Prediction in Clinical Survival Analysis focuses on dynamic models for the remaining lifetime at later points in time, for instance using landmark models. Designed to be useful to applied statisticians and clinical epidemiologists, each chapter in the book has a practical focus on the issues of working with real life data. Chapters conclude with additional material either on the interpretation of the models, alternative models, or theoretical background. The book consists of four parts: * Part I deals with prognostic models for survival data using (clinical) information available at baseline, based on the Cox model * Part II is about prognostic models for survival data using (clinical) information available at baseline, when the proportional hazards assumption of the Cox model is violated * Part III is dedicated to the use of time-dependent information in dynamic prediction * Part IV explores dynamic prediction models for survival data using genomic data Dynamic Prediction in Clinical Survival Analysis summarizes cutting-edge research on the dynamic use of predictive models with traditional and new approaches. Aimed at applied statisticians who actively analyze clinical data in collaboration with clinicians, the analyses of the different data sets throughout the book demonstrate how predictive models can be obtained from proper data sets.

Hands-on Machine Learning with R provides a practical and applied approach to learning and developing intuition into today's most popular machine learning methods. This book serves as a practitioner's guide to the machine learning process and is meant to help the reader learn to apply the machine learning stack within R, which includes using various R packages such as glmnet, h2o, ranger, xgboost, keras, and others to effectively model and gain insight from their data. The book favors a hands-on approach, providing an intuitive understanding of machine learning concepts through concrete examples and just a little bit of theory. Throughout this book, the reader will be exposed to the entire machine learning process including feature engineering, resampling, hyperparameter tuning, model evaluation, and interpretation. The reader will be exposed to powerful algorithms such as regularized regression, random forests, gradient boosting machines, deep learning, generalized low rank models, and more! By favoring a hands-on approach and using real word data, the reader will gain an intuitive understanding of the architectures and engines that drive these algorithms and packages, understand when and how to tune the various hyperparameters, and be able to interpret model results. By the end of this book, the reader should have a firm grasp of R's machine learning stack and be able to implement a systematic approach for producing high quality modeling results. Features: * Offers a practical and applied introduction to the most popular machine learning methods. * Topics covered include feature engineering, resampling, deep learning and more. * Uses a hands-on approach and real world data.

Where do I start? How do I know if I'm asking the right questions? How do I analyze the data once I have it? How do I report the results? When will I ever understand the process? If you are new to using the Stata software, and concerned about applying it to a project, help is at hand. David Pevalin and Karen Robson offer you a step by step introduction to the basics of the software, before gently helping you develop a more sophisticated understanding of Stata and its capabilities. The book will guide you through the research process offering further reading where more complex decisions need to be made and giving 'real world' examples from a wide range of disciplines and anecdotes that clarify issues for readers. The book will help with: manipulating and organizing data; generating statistics; interpreting results; and, presenting outputs. "The Stata Survival Manual" is a lifesaver for both students and professionals who are using the Stata software!

This is the first book of its kind which teaches matrix algebra, allowing the student to learn the material by actually working with matrix objects in modern computer environment of R. Instead of a calculator, R is a vastly more powerful free software and graphics system.The book provides a comprehensive overview of matrix theory without being bogged down in proofs or tedium. The reader can check each matrix result with numerical examples of exactly what they mean and understand their implications. The book does not shy away from advanced topics, especially the ones with practical applications.

This is the first book of its kind which teaches matrix algebra, allowing the student to learn the material by actually working with matrix objects in modern computer environment of R. Instead of a calculator, R is a vastly more powerful free software and graphics system.

The book provides a comprehensive overview of matrix theory without being bogged down in proofs or tedium. The reader can check each matrix result with numerical examples of exactly what they mean and understand their implications. The book does not shy away from advanced topics, especially the ones with practical applications.

After the great expansion of genome-wide association studies, their scientific methodology and, notably, their data analysis has matured in recent years, and they are a keystone in large epidemiological studies. Newcomers to the field are confronted with a wealth of data, resources and methods. This book presents current methods to perform informative analyses using real and illustrative data with established bioinformatics tools and guides the reader through the use of publicly available data. Includes clear, readable programming codes for readers to reproduce and adapt to their own data. Emphasises extracting biologically meaningful associations between traits of interest and genomic, transcriptomic and epigenomic data Uses up-to-date methods to exploit omic data Presents methods through specific examples and computing sessions Supplemented by a website, including code, datasets, and solutions

Sufficient dimension reduction is a rapidly developing research field that has wide applications in regression diagnostics, data visualization, machine learning, genomics, image processing, pattern recognition, and medicine, because they are fields that produce large datasets with a large number of variables. Sufficient Dimension Reduction: Methods and Applications with R introduces the basic theories and the main methodologies, provides practical and easy-to-use algorithms and computer codes to implement these methodologies, and surveys the recent advances at the frontiers of this field. Features Provides comprehensive coverage of this emerging research field. Synthesizes a wide variety of dimension reduction methods under a few unifying principles such as projection in Hilbert spaces, kernel mapping, and von Mises expansion. Reflects most recent advances such as nonlinear sufficient dimension reduction, dimension folding for tensorial data, as well as sufficient dimension reduction for functional data. Includes a set of computer codes written in R that are easily implemented by the readers. Uses real data sets available online to illustrate the usage and power of the described methods. Sufficient dimension reduction has undergone momentous development in recent years, partly due to the increased demands for techniques to process high-dimensional data, a hallmark of our age of Big Data. This book will serve as the perfect entry into the field for the beginning researchers or a handy reference for the advanced ones. The author Bing Li obtained his Ph.D. from the University of Chicago. He is currently a Professor of Statistics at the Pennsylvania State University. His research interests cover sufficient dimension reduction, statistical graphical models, functional data analysis, machine learning, estimating equations and quasilikelihood, and robust statistics. He is a fellow of the Institute of Mathematical Statistics and the American Statistical Association. He is an Associate Editor for The Annals of Statistics and the Journal of the American Statistical Association.

Analyzing Health Data in R for SAS Users is aimed at helping health data analysts who use SAS accomplish some of the same tasks in R. It is targeted to public health students and professionals who have a background in biostatistics and SAS software, but are new to R. For professors, it is useful as a textbook for a descriptive or regression modeling class, as it uses a publicly-available dataset for examples, and provides exercises at the end of each chapter. For students and public health professionals, not only is it a gentle introduction to R, but it can serve as a guide to developing the results for a research report using R software. Features: Gives examples in both SAS and R Demonstrates descriptive statistics as well as linear and logistic regression Provides exercise questions and answers at the end of each chapter Uses examples from the publicly available dataset, Behavioral Risk Factor Surveillance System (BRFSS) 2014 data Guides the reader on producing a health analysis that could be published as a research report Gives an example of hypothesis-driven data analysis Provides examples of plots with a color insert

This book Algebraic Modeling Systems - Modeling and Solving Real World Optimization Problems - deals with the aspects of modeling and solving real-world optimization problems in a unique combination. It treats systematically the major algebraic modeling languages (AMLs) and modeling systems (AMLs) used to solve mathematical optimization problems. AMLs helped significantly to increase the usage of mathematical optimization in industry. Therefore it is logical consequence that the GOR (Gesellschaft fur Operations Research) Working Group Mathematical Optimization in Real Life had a second meeting devoted to AMLs, which, after 7 years, followed the original 71st Meeting of the GOR (Gesellschaft fur Operations Research) Working Group Mathematical Optimization in Real Life which was held under the title Modeling Languages in Mathematical Optimization during April 23-25, 2003 in the German Physics Society Conference Building in Bad Honnef, Germany. While the first meeting resulted in the book Modeling Languages in Mathematical Optimization, this book is an offspring of the 86th Meeting of the GOR working group which was again held in Bad Honnef under the title Modeling Languages in Mathematical Optimization.

Now in its second edition, this handbook collects authoritative contributions on modern methods and tools in statistical bioinformatics with a focus on the interface between computational statistics and cutting-edge developments in computational biology. The three parts of the book cover statistical methods for single-cell analysis, network analysis, and systems biology, with contributions by leading experts addressing key topics in probabilistic and statistical modeling and the analysis of massive data sets generated by modern biotechnology. This handbook will serve as a useful reference source for students, researchers and practitioners in statistics, computer science and biological and biomedical research, who are interested in the latest developments in computational statistics as applied to computational biology.