Carbon (C), Nitrogen (N) and Phosphorus (P) are three of the most important elements used to build living beings, and their uptake from the environment is consequently essential for all organisms. Photosynthesis is the process in which plants absorb atmospheric C as they grow and convert it to biomass. However, plants acquire N and P only when these are available in the soil solution, which makes these elements the most limiting nutrients in plant growth and productivity in most ecosystems. When plant residues and roots decompose, the C, N and P they contain is transformed primarily into soil organic matter (SOM) or C and N can release to the atmosphere. Recent interest on the global C, N and P cycles has focused attention on the different proportion of terrestrial C, N and P stored in different ecosystem pools. Cuatro Cienegas represents an exceptional place, since the plants are not the base of the food web, they are the microbial community, that recycle the elements essential for life. In this book we describe how this is an analog of early Earth.

This contributed volume sheds new light on waste management and the production of biofuels. The authors share insights into microbial applications to meet the challenges of environmental pollution and the ever- growing need for renewable energy. They also explain how healthy and balanced ecosystems can be created and maintained using strategies ranging from oil biodegration and detoxification of azo dyes to biofouling. In addition, the book illustrates how the metabolic abilities of microorganisms can be used in microbial fuel-cell technologies or for the production of biohydrogen. It inspires young researchers and experienced scientists in the field of microbiology to explore the application of green biotechnology for bioremediation and the production of energy, which will be one of the central topics for future generations.

Many Microorganisms and some macro-organisms can live under extreme conditions. For example, high and low temperature, acidic and alkaline conditions, high salt areas, high pressure, toxic compounds, high level of ionizing radiation, anoxia and absence of light, etc. Many organisms inhabit environments characterized by more than one form of stress (Polyextremophiles). Among them are those who live in hypersaline and alkaline, hot and acidic, cold/hot and high hydrostatic pressure, etc. Polyextremophiles found in desert regions have to copy with intense UV irradiation and desiccation, high as well as low temperatures, and low availability of water and nutrients. This book provides novel results of application to polyextremophiles research ranging from nanotechnology to synthetic biology to the origin of life and beyond.

This is the fourth updated and revised edition of a well-received book that emphasises on fungal diversity, plant productivity and sustainability. It contains new chapters written by leading experts in the field. This book is an up-to-date overview of current progress in mycorrhiza and association with plant productivity and environmental sustainability. The result is a must hands-on guide, ideally suited for agri-biotechnology, soil biology, fungal biology including mycorrrhiza and stress management, academia and researchers. The topic of this book is particularly relevant to researchers involved in mycorrhiza, especially to food security and environmental protection. Mycorrhizas are symbioses between fungi and the roots of higher plants. As more than 90% of all known species of plants have the potential to form mycorrhizal associations, the productivity and species composition and the diversity of natural ecosystems are frequently dependent upon the presence and activity of mycorrhizas. The biotechnological application of mycorrhizas is expected to promote the production of food while maintaining ecologically and economically sustainable production systems.

This volume summarizes recent advances in environmental microbiology by providing fascinating insights into the diversity of microbial life that exists on our planet. The first two chapters present theoretical perspectives that help to consolidate our understanding of evolution as an adaptive process by which the niche and habitat of each species develop in a manner that interconnects individual components of an ecosystem. This results in communities that function by simultaneously coordinating their metabolic and physiologic actions. The third contribution addresses the fossil record of microorganisms, and the subsequent chapters then introduce the microbial life that currently exists in various terrestrial and aquatic ecosystems. Coverage of the geosphere addresses endolithic organisms, life in caves and the deep continental biosphere, including how subsurface microbial life may impact spent nuclear fuel repositories. The discussion of the hydrosphere includes hypersaline environments and arctic food chains. By better understanding examples from the micro biosphere, we can elucidate the many ways in which the niches of different species, both large and small, interconnect within the overlapping habitats of this world, which is governed by its microorganisms.

This book focuses on agricultural waste treatment and renewable energy production from the perspective of anaerobic digestion. It covers topics on anaerobic digestion processes and practices in various types of biogas plant construction and management and systematically addresses the principle and main features of three kinds of anaerobic digestion systems: household digesters, biogas septic tanks, and biogas plants. Instructive, informative and easy to understand, the book offers a valuable asset for researchers, technicians, graduate students and managerial personnel working in the areas of renewable energy, agricultural ecological engineering and the treatment and utilization of agricultural wastes.

This work brings together a number of accounts of the mechanisms whereby microorganisms are able to degrade a wide variety of compounds. These compounds range from petroleum-derived materials, which continue to predominate in questions of environmental contamination and pollution, to the degradation of the major natural materials that microorganisms may encounter in all types of habitat. Both aerobic and anaerobic modes of attack are covered. The emphasis in all the chapters is upon the underlying biochemical pathways that microorganisms use: differences between bacteria, yeasts and moulds are highlighted whenever opportune and uses of microbial consortia for attack on the most recalcitrant molecules is also documented. Activity of microorganisms in the soil, groundwater and marine environments are all considered. The book should be of interest to all whose work brings them into contact with the results of microbial degradations. The consequences of microbial degradations may be beneficial as well as deleterious: an advantage with some compounds, a decided disadvantage with others. The basis by which microorganisms achieve these attacks then provides the vital knowledge that will accelerate the former and, hopefully, retard the latter. The pathways of microbial degradations of all major classes of compounds are covered in a single volume. The diversity of microbial activities are clearly described and current advances in the applications of biochemistry, molecular biology, genetics, enzyme chemistry and engineering feature in almost every chapter.

This book contributes to better understand how lifestyle modulations can effectively halt the emergence and progression of human diseases. The book will allow the reader to gain a better understanding of the mechanisms by which the environment interferes with the bio-molecular regulatory processes underlying the emergence and progression of complex diseases, such as cancer. Focusing on key and early cellular bio-molecular events giving rise to the emergence of degenerative chronic disease, it builds on previous experience on the development of multi-cellular organisms, to propose a mathematical and computer based framework that allows the reader to analyze the complex interplay between bio-molecular processes and the (micro)-environment from an integrative, mechanistic, quantitative and dynamical perspective. Taking the wealth of empirical evidence that exists it will show how to build and analyze models of core regulatory networks involved in the emergence and progression of chronic degenerative diseases, using a bottom-up approach.

This volume focuses on those instances when benign and even beneficial relationships between microbes and their hosts opportunistically change and become detrimental toward the host. It examines the triggering events which can factor into these changes, such as reduction in the host's capacity for mounting an effective defensive response due to nutritional deprivation, coinfections and seemingly subtle environmental influences like the amounts of sunlight, temperature, and either water or air quality. The effects of environmental changes can be compounded when they necessitate a physical relocation of species, in turn changing the probability of encounter between microbe and host. The change also can result when pathogens, including virus species, either have modified the opportunist or attacked the host's protective natural microflora. The authors discuss these opportunistic interactions and assess their outcomes in both aquatic as well as terrestrial ecosystems, highlighting the impact on plant, invertebrate and vertebrate hosts.

Plant microbe interaction is a complex relationship that can have various beneficial impacts on both the communities. An urgent need of today's world is to get high crop yields in an ecofriendly manner. Utilization of beneficial and multifaceted plant growth promoting (PGP) microorganisms can solve the problem of getting enhanced yields without disturbing the ecosystem thus leading to sustainability. For this to achieve understanding of the intricate details of how the beneficial microbes form associations with the host plant and sustain that for millions of years must be known. A holistic approach is required wherein the diversity of microbes associated with plant and the network of mechanisms by which they benefit the host must be studied and utilized. 'Plant Microbe Symbiosis - Fundamentals and Advances' provides a comprehensive understanding of positive interactions that occur between plant and microorganisms and their utilization in the fields. The book reviews the enormous diversity of plant associated microbes, the dialog between plant-microbes-microbes and mechanisms of action of PGP microbes. Utilization of PGPRs as nutrient providers, in combating phytopathogens and ameliorating the stressed and polluted soils is also explained. Importantly, the book also throws light on the unanswered questions and future direction of research in the field. It illustrates how the basic knowledge can be amalgamated with advanced technology to design the future bioformulations.

This volume of the Trilogy of Traditional Foods, part of the ISEKI Food Series, describes important aspects of the production of foods and beverages from all over the globe. The intention of this volume is to provide readers with an appreciation of how products were initially made, and which factors have shaped their development over time. Some modern products have remained local, while others are commodities that appear in peoples' cabinets all over the world. Modernization of Traditional Food Processes and Products is divided into two sections. The first section focuses on products originating in Europe, while the second section is a collection of products from the rest of the world. Each chapter describes the origin of a particular food or beverage and discusses the changes and the science that led to the modern products found on supermarket shelves. The international List of Contributors, which includes authors from China, Thailand, India, Argentina, New Zealand, and the United Kingdom, attests to the international collaboration for which the ISEKI Food Series is known. The volume is intended for both the practicing food professional and the interested reader.

Since their discovery in 1869, the dictyostelids have attracted the attention of scientists in a wide variety of fields. This interest has stemmed from their peculiar lifestyle and developmental properties, which were shaped by the evolutionary forces that generated multicellularity during eukaryotic evolution. More recently, the dictyostelids have gained attention due to the striking similarities found at the genomic, cellular and biochemical levels with human cells, which has propelled the species Dictyostelium discoideum to become a model system for biology and medicine in many laboratories. This book covers the latest advances in our knowledge of these extraordinary organisms with topics spanning from their evolutionary history, ecology and diversity to the recent discoveries regarding their cellular and molecular biology.

This concise volume describes the latest, up-to-date theory, methodology, and applications of ABC transporters in microorganisms. The topics include the structure, physiology, and evolution of ABC transporters, as well as their special characteristics in specific microorganisms, including bacteria, yeast, trypanosomes, and malaria parasites. In particular, the book describes the most recent research and innovations relative to the role of ABC transporters in the design of strategies to circumvent drug resistance in microorganisms. Each chapter comprises an exhaustive review of the particular topic and provides insights into the future of the field, both from the scientific and clinical perspective. A skillful selection of topics and a panel of acknowledged experts ensure that this concise volume will be of exceptional importance to everyone involved in DNA superfamily research, as well as scientists interested in microbial physiology and multidrug resistance. It is essential reading for anyone involved in this field, and it is a recommended volume for all microbiology laboratories.

The rapid advancement of sequencing techniques, coupled with the new methodologies of bioinformatics to handle large-scale data analysis, are providing exciting opportunities for us to understand microbial communities from a variety of environments beyond previous imagination. This book provides up-to-date and detailed information on various aspects of bioinformatics data analysis with applications to microbiology.

Origin and General Nature of Retroviruses; H.M. Temin. Structure and Classification of Retroviruses; J.M. Coffin. Evolutionary Potential of Complex Retroviruses; G.M. Myers, G.N. Pavlakis. Retroelements in Microorganisms; D.J. Garfinkel. Biology of Avian Retroviruses; L.N. Payne. Retroviruses in Rodents; C.A. Kozak, S. Ruscetti. 1 additional article. Index.

This volume focuses on the developmental areas of biopesticides: production, formulation, application and field efficacy. Chapters guide readers through methods and techniques on environmental, mammalian, safety, and registration. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Microbial-Based Biopesticides aims to ensure successful results in the further study of this vital field.

This book presents the latest results in the exploration of halophilic bacteria, archaea, fungi and viruses. Basic and molecular aspects as well as possible biotechnological applications of halophiles are highlighted by leading scientists. Topics include: the family "Halomonadaceae"; the hypersaline lakes of Inner Mongolia; "Salinibacter ruber" - from genomics to microevolution and ecology"; "the" "impact of lipidomics on the microbial world of hypersaline environments; molecular mechanisms of adaptation to high salt concentration in the black yeast "Hortaea werneckii"; viruses in hypersaline environments; initiation and regulation of translation in halophilic Archaea; protein transport into and across haloarchaeal cytoplasmic membranes; protein glycosylation in "Haloferax volcanii"; the effect of anoxic conditions and temperature on gas vesicle formation in "Halobacterium salinarum"; halophiles exposed to multiple stressors; cellular adjustments of "Bacillus subtilis" to fluctuating salinities; the nature and function of carotenoids in "Halobacillus halophilus"; xanthorhodopsin; enzymatic biomass degradation by halophilic microorganisms; and enzymes from halophilic Archaea.

This volume summarizes recent advances in our understanding of the mechanisms that produce successful symbiotic partnerships involving microorganisms. It begins with a basic introduction to the nature of and mechanistic benefits derived from symbiotic associations. Taking that background knowledge as the starting point, the next sections include chapters that examine representative examples of coevolutionary associations that have developed between species of microbes, as well as associations between microbes and plants. The authors conclude with a section covering a broad range of associations between microbes and invertebrate animals, in which they discuss the spectrum of hosts, with examples ranging from bryozoans and corals to nematodes, arthropods, and cephalopods. Join the authors on this journey of understanding!

Molecular Structure of the Arenaviruses: Arenavirus Ultrastructure and Morphogenesis; R.W. Compans. Glycoproteins of the Arenaviruses; J.W. Burns, M.J. Buchmeier. Antigenic Diversity among the Arenaviruses; C.R. Howard. Genetic Variation in Junin Virus; C.E. Coto, et al. Mechanism of Arenavirus RNA Synthesis; D. Kolakofsky, D. Garcin. Subgenomic RNAs of Tacaribe Virus; M.T. Franze-Fernandez, et al. Arenavirus Cellular Tropisms and Virulence; D.G. Harnish, et al. Immuno-Pathology, Vaccines, and Epidemiology Lymphocutic Choriomeningitis Virus; C.J. Pfau, A.R. Thomsen. Molecular Anatomy of the Cytotoxic T Lymphocyte Response to Lympocytic Choriomeningitis Virus; L.S. Klavinskis, et al. Virus Induced Acquire Immune Suppression by T Cell Mediated Immunopathology and Vaccine Strategies; R.M. Zinkernagel. Construction and Evaluation of Vaccines for Lassa Fever; D.D. Auperin. 8 additional articles. Index.

In the last quarter century, advances in mass spectrometry (MS) have been at the forefront of efforts to map complex biological systems including the human metabolome, proteome, and microbiome. All of these developments have allowed MS to become a well-established molecular level technology for microorganism characterization. MS has demonstrated its considerable advantage as a rapid, accurate, and cost-effective method for microorganism identification, compared to conventional phenotypic techniques. In the last several years, applications of MS for microorganism characterization in research, clinical microbiology, counter-bioterrorism, food safety, and environmental monitoring have been documented in thousands of publications. Regulatory bodies in Europe, the US, and elsewhere have approved MS-based assays for infectious disease diagnostics. As of mid-2015, more than 3300 commercial MS systems for microorganism identification have been deployed worldwide in hospitals and clinical labs. While previous work has covered broader approaches in using MS to characterize microorganisms at the species level or above, this book focuses on strain-level and subtyping applications. In twelve individual chapters, innovators, leaders and practitioners in the field from around the world have contributed to a comprehensive overview of current and next-generation approaches for MS-based microbial characterization at the subspecies and strain levels. Chapters include up-to-date reference lists as well as web-links to databases, recommended software, and other useful tools. The emergence of new, antibiotic-resistant strains of human or animal pathogens is of extraordinary concern not only to the scientific and medical communities, but to the general public as well. Developments of novel MS-based assays for rapid identification of strains of antibiotic-resistant microorganisms are reviewed in the book as well. Microbiologists, bioanalytical scientists, infectious disease specialists, clinical laboratory and public health practitioners as well as researchers in universities, hospitals, government labs, and the pharmaceutical and biotechnology industries will find this book to be a timely and valuable resource.

This book describes various aspects of modern microbiology including microbial enzymes, secondary metabolites, next-generation sequencing, microbial-based biopesticides, microbial-based cancer therapies, biodiesel, and microbial products from fermentation, biodegradation, bioremediation and wastewater treatment. Further, it explains how and why microbes play an important role in preserving the welfare of living beings and the environment. Many bacteria play a significant part in cleaning our environment by detoxifying various xenobiotic compounds, while several microbes produce secondary metabolites that are useful to human beings. The book is divided into 15 chapters that cover various aspects of microorganism-based biotechnology, including recent methodologies such as advanced molecular techniques, as well developments in classical microbiological techniques. The authors also explain how the latest and classical techniques are being used in modern-day microbial biotechnology. All chapters were written by experts from prominent universities, research laboratories, and institutes around the globe. Above all, they focus on recent advances in microbial technology that promote the welfare of living beings and the environment.

Written by specialists in the different fields, this book presents new perspectives and insights into strategies and weapons to fight microbial infections. It also reviews the "state of the art" of alternative treatment approaches and new therapeutic agents to deal with infections caused by multidrug-resistant microorganisms. In an era of accumulated resistance to current antibiotics, it is vital that this is undertaken without further delay. Aspects discussed include the control of RNA synthesis, the use of bacteriocins or enzybiotics (bacteriophages or purified lysins), the specific control of pathogenic clostridia, the design of new drugs affecting DNA synthesis in bacteria, the use of fecal-matter transplant strategies, the specific control of quorum sensing responses in bacteria, the use of new peptides as antibiotics and new ways to control bacteria that cause cancer, such as Helicobacter pylori cancers.

Due to various special physiological features and a genome that greatly differs in structure, gene content and organization from other yeasts, Y. lipolytica is widely used as a host system. With its characteristics, such as the ability to grow on lipids or grease, to accumulate oil and the high capacity for secretion of proteases and lipases, the yeast is of great interest for biotechnological applications. The main topics covered in this Microbiology Monograph are: expression and secretion of heterologous proteins; acid and alkaline extracellular proteases; genetics, production, biochemical characterization and biotechnological application of lipases; production and secretion of several organic acids and flagrances; as well as the functional expression of P450 systems and its use in steroid biotransformation.

This volume covers microbiological, clinical and patophysiological aspects of sepsis and also provides general overview chapters with every chapter discussing the real clinical impact of the discussed diagnostic approaches. Sepsis is a major clinical problem that takes an inordinate toll on human lives and economical resources. It is widely recognized that inappropriate treatment is associated with a dramatic increase in mortality, especially within the first hours, therefore clinical and microbiological diagnosis are of pivotal importance in the management of septic patients. Written in the successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, and notes on troubleshooting and avoiding known pitfalls. Authoritative and easily accessible, Sepsis: Diagnostic Methods and Protocols seeks to serve both professionals and novices with its well-honed methodologies in an effort to further our knowledge of this life-threatening illness.