Plants form mutualistic association with various microorganisms, particularly in the rhizosphere region. The association benefits both the partners in a number of ways. A single plant can support the growth of diverse microbes and in reciprocation these microbes help the plant in several ways. A great deal of knowledge is now available on the mechanisms of action of plant growth promoting microbes in forming association with their partner plant and benefitting it. With ever increasing population and to achieve food security it has become utmost necessary to utilize these friendly microbes to enhance the crop yield and quality in an ecofriendly and sustainable manner. We already know about the huge negative impact of chemicals used in agriculture on the humans and the ecosystems as whole. 'Plant Microbes Symbiosis - Applied Facets' provides a comprehensive knowledge on practical, functional and purposeful utility of plant-microbe interactions. The book reviews the utilization of beneficial microbes for crop yield enhancement and protection against diseases caused by phytopathogens and nutrient deficiencies. The tome also reviews the utility of plant growth promoting microbes in helping the plants to deal with abiotic stresses imposed by climate change and anthropogenic activities. The book showcases how plant-microbe interactions are or can be utilized for reclamation of stressed soils and degradation of pollutants in a most effective and environment friendly manner. It also ascertains the reasons for the below par performance of the microbial based inoculants. The utilization of biotechnological tools for development of next generation bioformulations to combat the new challenges and overcome past hurdles has been discussed. This wonderful association between plants and microbes if used properly will not only enhance the crop yields and reclaim barren lands but also make our planet a better place to live on for all of its habitants.

This book gives basic facts about litter decomposition studies, which are of guidance for scientists who start studies. Since the publication of the third edition, there has been quite a development not only in the field of litter decomposition but also in supporting branches of science, which are important for fruitful work on and understanding of decomposition of plant litter and sequestration of carbon. A consequence is that 'old established truths' are becoming outdated. New knowledge in the fields of phytochemistry and microbial ecology has given a new baseline for discussing the concepts 'litter decomposition' and 'carbon sequestration'. We can also see a rich literature on litter decomposition studies using roots and wood as substrates. These have given new insights in factors that regulate the decomposition rate and as regards roots their contribution to sequestered carbon in humus. Additional facts on the role of temperature vs the litters' chemical composition may in part change our view on effects of climate change. Further information on applications of the new analytical technique (13C-NMR) for determining organic-chemical compounds has allowed us to develop these parts. Focus is laid on needle litter of Scots pine as a model substrate as this species has been considerably more studied than other litter species. Also the boreal/northern temperate coniferous forest has in part been given this role. Still, new information may allow us to develop information about litter from further tree species.

Microbial Phenazines: Biosynthesis, Agriculture and Health focuses on phenazines, a group of upwards of a hundred nitrogen-containing redox-active heterocyclic compounds of bacterial origin that have long attracted scientific interest because of their colorful pigmentation. Our understanding of these fascinating natural products and their role in human health and the environment has advanced rapidly in recent years, but we are only now beginning to be able to exploit the potential of these compounds in such fields as agriculture and medicine. This volume includes information on the biochemistry and genetics of phenazine synthesis, the physiological effects of phenazines, and methods for the isolation and identification of phenazines with the aid of spectroscopic and electrophoretic techniques. Also included are chapters focused on the roots of phenazine research in the biological control of plant pathogens and recent knowledge of the diversity of phenazine-producing microorganisms and the environments in which they occur. A final chapter addresses the potential of phenazines in the treatment of cancer.

Understanding the origin of fecal pollution is essential in assessing potential health risks as well as for determining the actions necessary to remediate the quality of waters contaminated by fecal matter. As a result, microbial source tracking (MST) has emerged as a field that has evolved and diversified rapidly since the first approaches were described only a decade ago. In response to the emergence of MST, there have been three large multi-laboratory method comparison studies (two in the US and one in Europe), plus numerous workshops, book chapters, and review articles dedicated to synthesizing information on the topic. Furthermore, a federal (USEPA) guide document describing the uses and limitations of MST methods was published in 2005, and a book dedicated to MST as an emerging issue in food safety was published in 2007. These documents provide a collective body of literature on MST that is both conflicting and complementary, often repetitious, and difficult to condense and interpret. In addition, it does not reflect the current diversity of MST approaches with different organisms, newer methodologies such as quantitative PCR, and anthropogenic chemicals, nor does it embrace the scope of MST research being conducted around the world.

The three editors of the book, all with extensive MST expertise, have developed chapters and invited authors who reflect the rich diversity and truly international scope of MST. The unifying theme throughout the book is the design of more standardized approaches to MST that include performance criteria (regardless of method or organism), plus recommendations for field study design and MST implementation. The editors intend that this book will serve as a valuable reference for all those who are involved with

This thesis describes an in-depth study of an indolizine-based fluorophore, from understanding of its structure-photophysical property relationship to its application as a useful biological reporter. Organic fluorophores have been extensively used in the field of molecular biology owing to their excellent photophysical property, suitable cell permeability, and synthetic flexibility. Understanding of the structure-photophysical property relationship of a given fluorophore often paves the road to the development of valuable molecular probes to visualize and transcribe biological networks. In this thesis, respective chapters deal with molecular design, organic synthesis, structure-property analysis, and quantum-mechanical interpretation of unexplored family of indolizine-based molecules. This systematic exploration has led to rational development of a new microalgae lipid droplet probe, colorful bioorthogonal fluorogenic probes, and a bright mitochondrial probe, working under live cell conditions. Harnessing the optical properties of a given fluorophore has been an important topic for a couple of decades, both in industry and in academia. This thesis provides useful insights for the improvement and development of unique small fluorescent materials, or optical materials.

Symbiotic Fungi Principles and Practice presents current protocols for the study of symbiotic fungi and their interactions with plant roots, such as techniques for analyzing nutrient transfer, ecological restoration, microbial communication, and mycorrhizal bioassays, AM inoculum procedures and mushroom technology.

The protocols offer practical solutions for researchers and students involved in the study of symbiotic microorganisms. The volume will be of great use for basic research, biotechnological applications, and the development of commercial products."

The book will address selected topics in postharvest pathology aiming at highlighting recent development in the science, technology and control strategies of postharvest diseases to reduce losses and enhance safety of harvested agricultural products. Topics will include: 1) Introduction: Perspectives and challenges in postharvest pathology 2) Elucidating host-pathogen interactions 3) Next generation technologies for management and detection of postharvest pathogens 4) Food safety in postharvest pathology 5) Alternative postharvest diseases control strategies 6) Chemical control of postharvest diseases

This book is the result of 14 years of collecting Entolomataceae in the native forests of Tasmania, Australia. Although initially involving only the Tasmanian residents Genevieve Gates and David Ratkowsky, who made twice- or thrice-weekly forays into the forests throughout the year, the project was subsequently joined by agaric specialist Machiel Noordeloos from the Netherlands, and by fungi photographer Michael Pilkington from the United Kingdom. The international character of the project is further evidenced by the earlier contributions of American mycologist Tim Baroni to the Tasmanian Rhodocybe species which form the basis of the chapter on the now-expanded concept of Clitopilus, and a visit of several months in 2010 by Brazilian Ph.D. candidate Fernanda Karstedt, who tested the keys to the Entoloma species. Consequently, several thousand well-annotated collections were found during this inventory and form the basis of this monographic treatment of the Entoloma and Clitopilus of Tasmania. The resulting 90 Entoloma species and 10 Clitopilus species are well documented with standardized descriptions, line drawings of fruit bodies and diagnostic microscopic characters, and, when available, with colour photographs. Thanks to the intensive search, it was possible to illustrate most species in colour. Dichotomous keys facilitate identification of the species. The species concept used is morphologically based; in several cases, however, identification to species level is supported by molecular data.

Metabolic engineering is the practice of genetically optimizing metabolic and regulatory networks within cells to increase production and/or recovery of certain substance from cells. In Microbial Metabolic Engineering: Methods and Protocols expert researchers in the field detail many of the methods which are now commonly used to study metabolic engineering. These include methods and techniques to engineer genes and pathways, use of modern biotechnology tools in microbial metabolic engineering, and examples of metabolic engineering for real world applications such as whole cell biosensors and acetate control in large scale fermentation. Written in the highly successful Methods in Molecular Biology (TM) series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and key tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Microbial Metabolic Engineering: Methods and Protocols seeks to provide researchers with an overview of key topics on microbial metabolic engineering.

Novel Food Fermentation Technologies provides a comprehensive overview of innovations in food fermentation technologies and their application. Current novel technologies for microbial culture production and preservation are covered in detail, as are fermentation techniques for the production of bioactives from various food matrices, including food processing by-products and waste. Readers are provided with a close look at thermal and non-thermal technologies applicable to fermented food products. The text covers immobilization, microencapsulation technologies and novel preservation techniques for cultures in fermentation. In-depth studies of high pressure processing, pulsed electric field, power ultrasound and gamma irradiation in fermentation are provided in addition to novel thermal and non-thermal technologies and process analytical techniques. A wide variety of fermented products are covered, including meat, marine-based, grain-based, dairy and vegetable-based products. Current technologies for extraction of bioactives are examined, as are current innovations in fermented food packaging. Readers are presented with current and future challenges in food fermentation as well. As a comprehensive reference for food fermentation, this work provides up-to-date insights into emerging fermentation technologies which facilitate the processing of wholesome and safe food products.

This book is devoted to nanomicrobiology and the nanosystems of bacteria. The initial chapter discusses some of the controversies in the geochemical and biomedical fields associated with the reports of nanobacteria in the environment. Current knowledge of several internal and surface structures of bacteria is addressed in this book. Included are chapters discussing carboxysomes, S-layers, gliding motility of bacteria, and aggregation of iron to produce nano-magnetite. Information about the activities of outer membrane vesicles produced by Gram-negative bacteria is discussed as a benefit to bacteria that produce it and some potential industrial applications are presented. A broad review of bacterial-mineral interactions is addressed in a chapter of metallic nanoparticles and colloids production by bacterial reduction of soluble redox active elements. The structures of bacterial nanowires are discussed and their application in extra-cellular electron transport is reviewed. Nanomotor activities of bacteria are discussed as pertains to the mechanics of flagellar rotation, production of energy by ATP synthase, DNA packing, and translocation of proteins across membranes by secretion systems. The rapidly evolving field of nanosystem technology is embracing many areas, and it is the hope that this book will stimulate the use of bacterial nanostructures for future developments in nanotechnology.

Foodborne illnesses caused by various bacterial, viral, and fungal pathogens lead to a high number of morbidity and mortality in the U.S. and throughout the world. Recent advances in microbial genomics have significantly improved our understanding of the physiology, evolution, ecology, epidemiology, and pathogenesis of different foodborne pathogens. This book focuses on the genomics of foodborne bacterial pathogens. It begins with a brief overview of the recent advances in microbial genomics and the impact of genomics on food safety research. Then, eight chapters follow that elaborate some in-depth reviews on the genomics of several common foodborne bacterial pathogens including Bacillus, Campylobacter, Clostridium, Escherichia coli, Listeria, Salmonella, Staphylococcus, and Vibrio. Finally, the last four chapters focus on some current genomic, transcriptomic, and proteomic technologies and their applications in studying the epidemiology, evolution, and pathogenesis of foodborne bacterial pathogens. Genomics of Foodborne Bacterial Pathogens can be used as a reference by scientists and professionals in academia, government, and industry who are interested in understanding microbial genomics and using genomics tools to study foodborne bacterial pathogens. This book can also be used as a textbook for instructors and professors who teach food microbiology or microbial genomics-related courses at the post-graduate level.

This book review series presents current trends in modern biotechnology. The aim is to cover all aspects of this interdisciplinary technology where knowledge, methods and expertise are required from chemistry, biochemistry, microbiology, genetics, chemical engineering and computer science. Volumes are organized topically and provide a comprehensive discussion of developments in the respective field over the past 3-5 years. The series also discusses new discoveries and applications. Special volumes are dedicated to selected topics which focus on new biotechnological products and new processes for their synthesis and purification. In general, special volumes are edited by well-known guest editors. The series editor and publisher will however always be pleased to receive suggestions and supplementary information. Manuscripts are accepted in English.

Systems biology is changing the way biological systems are studied by allowing us to examine the cell and organism as a whole. Systems biotechnology allows optimal design and development of upstream to downstream bioprocesses by taking a systems-approach. E. coli has been a model organism for almost all biological and biotechnological studies. This book brings together for the first time the state-of-the-art reviews by the world-leading experts on systems biology and biotechnological applications of E. coli. The topics covered include genomics and functional genomics, resources for systems biology, network analysis, genome-scale metabolic reconstruction, modelling and simulation, dynamic modelling and simulation, systems-level analysis of evolution, plasmids and expression systems, protein synthesis, production and export, engineering the central metabolism, synthetic biology, and systems metabolic engineering of E. coli. This book provides readers with guidance on how a complex biological system can be studied using E. coli as a model organism. It also presents how to perform synthetic biology and systems metabolic engineering studies on E. coli with successful examples, the approaches of which can be extended to other organisms. This book will be a complete resource for anyone interested in systems biology and biotechnology.

This volume on iron-sulfur proteins includes chapters that describe the initial discovery of iron-sulfur proteins in the 1960s to elucidation of the roles of iron sulfur clusters as prosthetic groups of enzymes, such as the citric acid cycle enzyme, aconitase, and numerous other proteins, ranging from nitrogenase to DNA repair proteins. The capacity of iron sulfur clusters to accept and delocalize single electrons is explained by basic chemical principles, which illustrate why iron sulfur proteins are uniquely suitable for electron transport and other activities. Techniques used for detection and stabilization of iron-sulfur clusters, including EPR and Mossbauer spectroscopies, are discussed because they are important for characterizing unrecognized and elusive iron sulfur proteins. Recent insights into how nitrogenase works have arisen from multiple advances, described here, including studies of high-resolution crystal structures.

This book will contain a series of solicited chapters that concern with the molecular machines required by viruses to perform various essential functions of virus life cycle. The first three chapters (Introduction, Molecular Machines and Virus Architecture) introduce the reader to the best known molecular machines and to the structure of viruses. The remainder of the book will examine in detail various stages of the viral life cycle. Beginning with the viral entry into a host cell, the book takes the reader through replication of the genome, synthesis and assembly of viral structural components, genome packaging and maturation into an infectious virion. Each chapter will describe the components of the respective machine in molecular or atomic detail, genetic and biochemical analyses, and mechanism. Topics are carefully selected so that the reader is exposed to systems where there is a substantial infusion of new knowledge in recent years, which greatly elevated the fundamental mechanistic understanding of the respective molecular machine. The authors will be encouraged to simplify the detailed knowledge to basic concepts, include provocative new ideas, as well as design colorful graphics, thus making the cutting-edge information accessible to broad audience.

Palms are monocots, Angiosperms, belonging to the family Palmae (Arecaceae), perennials having woody stems. Palmae (Arecaceae) family comprised of about six subfamilies, 200 genera and 2,700 species that are distributed all over the tropical, subtropical and Mediterranean landscape. Palms are diverse (ecologically and morphologically) group of plants. Ornamental palms are important component of landscape as well as interiorscapes. Additionally, these plants are good source of food, feed and shelter with numerous other commercial benefits. Likewise other trees and crops, landscape and field nurseries of palms are also subjected to various threats of insect pest and diseases (caused by different plant pathogens). Amongst fungal diseases leaf spots, leaf blights, Fusarium wilts, butt rots, bud rots, root rots, lethal yellowing and decline of palms are major growth constraints of palm growth. In developing countries very little attention has been paid on the etiology and management of these fungal diseases on ornamental palms. Accurate diagnosis and reliable management plan of palm fungal diseases usually requires expertise in both modern and advanced plant pathological approaches. Historically it was general belief that plant pathogens are not associated with human diseases. Since 19th century, several clinical reports are available indicating many plant pathogenic fungi (Aspergillus spp., Penicillium spp., Alternaria spp., Trichoderma spp., Fusarium spp., Curvularia spp. and Colletotrichum Spp) as novel agents of human diseases. Besides the association of fungal plant pathogens infecting ornamental palms, harbouring any of earlier mentioned or other fungal species (capable of causing certain diseases in human beings or pets) by the ornamental palms cultivation (either grown indoor or outdoor) is an important area of research to be explored and addressed thoroughly. This book will provide the deep information regarding major fungal diseases of ornamental palms, their symptoms, disease identification, and etiology and management strategies. This book will also provide unique knowledge regarding the ornamental palms harbouring kinds of human fungal pathogens and their practical management at domestic and commercial scale, in order to make cultivation of these plant more beneficial for humans, animals and environment.

This book examines aspects of paediatric infectious diseases written by leading authorities in the field. It is based on a lecture given at the seventh Infection and Immunity in Children (IIC) course held at the end of June 2009 at Keble College, Oxford.

This is the first English-language book dedicated to Brazilian sand flies and their medical importance. No other country has so many species of these haematophagous insects as Brazil and their diversity has reached an astonishing level. The book contains comprehensive chapters, written by Brazilian experts on their regional distribution, their ecology and their importance as vectors of pathogens and parasites. Methods for sampling, processing and preserving phlebotomines are reviewed as are perspectives on surveillance and leishmaniasis vector control. A novel classification is presented whose aim is to help investigators identify the species that they are working with more efficiently.

At the close of the 1970s, the two-domain classification scheme long used by most biologists prokaryotes versus eukaryotes was upended by the discovery of an entirely new group of organisms: Archaea. Initially thought to be bacteria, these single-celled microbes many of which were first found in seemingly unlivable habitats like the volcanic hot springs of Yellowstone National Park were in fact so different at molecular and genetic levels as to constitute a separate, third domain beside bacteria and eukaryotes. Their discovery sparked a conceptual revolution in our understanding of the evolution of life, and Patrick Forterre was and still is at the vanguard of this revolution. In Microbes from Hell, the world's leading expert on Archaea and hyperthermophiles, or organisms that have evolved to flourish in extreme temperatures, offers a colorful, engaging account of this taxonomic upheaval. Blending tales of his own search for thermophiles with discussions of both the physiological challenges thermophiles face and the unique adaptations they have evolved to live in high-temperature environments, Forterre illuminates our developing understanding of the relationship between Archaea and the rest of Earth's organisms. From biotech applications to the latest discoveries in thermophile research, from microbiomes to the communities of organisms that dwell on deep-sea vents, Forterre's exploration of life forms that seem to thrive at the mouth of hell provides a glimpse into the early days of Earth, offering deep insight into what life may have looked like in the extreme environments of our planet's dawn.

This edited book details the plant-assisted remediation methods, which involves the interaction of plant roots with associated rhizospheric microorganisms for the remediation of soil and water contaminated with high levels of heavy metals, pesticides, radionuclides, agricultural by-products, municipal wastes, industrial solvents, petroleum hydrocarbons, organic compounds, and various other contaminants. Each chapter highlights and compares the beneficial and economical alternatives of phytoremediation to currently practiced soil, water, and air removal. This book covers state-of-the-art approaches in phytoremediation contributed by leading and eminent scientists from across the world. Phytoremediation approaches for environmental sustainability dealing the readers with a cutting-edge of multidisciplinary understanding in the principal and practical approaches of phytoremediation from laboratory research to field application. This book is of interest to researchers, teachers, environmental scientists, environmental engineers, environmentalists, and policy makers. Also, the book serves as additional reading material for undergraduate and graduate students of environmental microbiology, biotechnology, eco-toxicology, environmental remediation, waste management, and environmental sciences as well as the general audience.

This volume presents various laboratory protocols, reviews, specific techniques and applications related to Schizosaccharomyces pombe. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Schizosaccharomyces pombe: Methods and Protocols hopes to serve as an excellent resource for faculty researchers, undergraduate student researchers, graduate researchers, government, and the medical community.

The discovery that most of the chronic infections in humans, including the oral, lung, vaginal and foreign body-associated infections, are biofilm-based, has prompted the need to design new and properly focused preventive and therapeutic strategies for these diseases. Microbial Biofilms: Methods and Protocols provides a detailed description of the currently available methods and protocols to investigate bacterial and fungal biofilms, exhaustively illustrated and critically annotated in 25 chapters written by authors well known for their experience in the respective fields. The book has joined together microbiologists and specialists in infectious diseases, hygiene and public health involved in exploring different aspects of microbial biofilms as well as in designing new methods and/or developing innovative laboratory protocols. Written in the successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols and notes on troubleshooting and avoiding known pitfalls. Authoritative and easily accessible, Microbial Biofilms: Methods and Protocols presents readers with the most established and validated experimental procedures to investigate microbial biofilms.

The book discusses ways to overcome the side effects of using hydrocarbon-based products as energy sources. Hydrocarbons produce raw crude oil waste of around 600,000 metric tons per annum, with a range of uncertainty of 200,000 metric tons per year. The various chapters in this book focus on approaches to reduce these wastes through the application of potential microbes, in a process called bioremediation. The book is a one-stop reference resource on the methods, mechanisms and application of the bio-composites, in the laboratory and field. Focusing on resolving a very pressing environmental issue, it not only provides details of existing challenges, but also offers deeper insights into the possibility of solving problems using hydrocarbon bioremediation.

The book summarises the current understanding of the Nervous -, Endocrine and Immune systems with emphasis on shared mediators and receptors and functional interaction. In addition to the fundamental physiological and pathophysiological mechanisms, which are presented in detail, some clinically relevant subjects are also presented, such as inflammation, asthma and allergy, autoimmune disease, immunodeficiency and the acute phase response.

- A comprehensive presentation of neuroimmune biology
- Introduces the subject matter to the uninformed reader
- Contains basic information, theoretical considerations and up-to-date clinical chapters
- The clinical chapters will be helpful to practising physicians