Bacteriology Methods for the Study of Infectious Diseases provides knowledge, understanding and experience of contemporary, robust methodologies for studies into the pathogenicity and virulence of human/animal bacterial pathogens. This book presents contemporary, yet widely utilized methodologies, for the study of pathogenicity and virulence in bacterial pathogens of human and/or animal origin. Protocols are clearly outlined, with lists of required equipment and reagents, alongside underpinning theory. This text will provide undergraduate and postgraduate students with practical guidance for dissertation projects with protocols for individual project ideas that can be developed further, hence a starting point for additional literature searches is also provided.

Molecular biology has revolutionized the study of microorganisms in the environment and has improved our understanding of the composition, phylogeny, and physiology of microbial communities. The current molecular toolbox encompasses a range of DNA-based technologies and new methods for the study of RNA and proteins extracted from environmental samples. Currently, there is a major emphasis on the application of "omics" approaches to determine the identities and functions of microbes inhabiting different environments. This book highlights the current state-of-the-art of environmental molecular microbiology. International experts have contributed chapters that describe the various technologies and their applications in environmental microbiology. The first half of the book focuses on the microbial diversity and phylogeny of microorganisms in the environment and describes the molecular toolbox currently available for the study of the composition and diversity of microbial communities and their functions. Topics include the use of the 16S rRNA gene as a phylogenetic marker, metagenomics, metaproteomics, microarrays, and molecular fingerprinting. The second half focuses on the application of these approaches in various environments including soil, marine water, plants, humans, and wastewater treatment. The last chapter of the book discusses the genetics and environmental implications of microbial biofilms. This is an essential book for advanced students, research scientists, environmental agencies, and industries involved in any aspect of environmental microbiology.

Smart Bioremediation Technologies: Microbial Enzymes provides insights into the complex behavior of enzymes and identifies metabolites and their degradation pathways. It will help readers work towards solutions for sustainable medicine and environmental pollution. The book highlights the microbial enzymes that have replaced many plant and animal enzymes, also presenting their applications in varying industries, including pharmaceuticals, genetic engineering, biofuels, diagnostics and therapy. In addition, new methods, including genomics andmetagenomics, are being employed for the discovery of new enzymes from microbes. This book brings all of these topics together, representing the first resource on how to solve problems in bioremediation.

This volume comprehensively reviews recent advances in our understanding of the diversity of microbes in various types of terrestrial ecosystems, such as caves, deserts and cultivated fields. It is written by leading experts, and highlights the culturable microbes identified using conventional approaches, as well as non-culturable ones unveiled with metagenomic and microbiomic approaches. It discusses the role of microbes in ecosystem sustainability and their potential biotechnological applications. The book further discusses the diversity and utility of ectomycorrhizal and entomopathogenic fungi and yeasts that dwell on grapes, it examines the biotechnological applications of specific microbes such as lichens, xylan- and cellulose-saccharifying bacteria and archaea, chitinolytic bacteria, methanogenic archaea and pathogenic yeasts.

Cyanobacteria constitute the most widely distributed group of photosynthetic prokaryotes found in almost all realms of the earth and play an important role in Earth's nitrogen and carbon cycle. The gradual transformation from reducing atmosphere to oxidizing atmosphere was a turning point in the evolutionary history of the earth and made conditions for present life forms possible. Cyanobacteria: From Basic Science to Applications is the first reference volume that comprehensively discusses all aspects of cyanobacteria, including the diverse mechanisms of cyanobacteria for the advancement of cyanobacterial abilities, towards higher biofuel productivity, enhanced tolerance to environmental stress and bioactive compounds and potential for biofertilizers.

Plant endophytes are a potential source for the production of bioactive compounds that can fight against devastating diseases in both plants and humans. Among these endophytic microorganisms, endophytic fungi are one of the dominant group of microorganisms with a potential role in plant growth promotion and the discovery of noble bioactive natural products. Endophytic fungi possess several bioactivities like anticancer, antimicrobial, insecticidal, plant growth stimulants, crop protection, phytoremediation, etc. Presence of modular biosynthetic genes clusters like PKS and NRPS in several endophytic fungi underscores the need to understand and explore such organisms. This volume presents and demonstrates the applied aspects of endophytic fungi. Practical applications of such endophytes are discussed in detail, including studies in pharmaceutical development and agricultural management of important microbial diseases. The beneficial effects that endophytic fungi provide to host plants-enhancing growth, increasing fitness, strengthening tolerance to abiotic and biotic stresses through secondary metabolites-are also discussed. The reader is provided with a comprehensive and detailed understanding of such relationships between endophytic fungi and their host.

This volume provides a clear understanding of how microbes, following their degradative processes, contribute maximally to the benefit of mankind through biotransformations of waste materials as well as a wide variety of health-risk compounds.

The book contains twenty four chapters contributed by leading scientists from different parts of the world, covering various aspects of bioremediation of xenobiotics such as toxic, carcinogenic, teratogenic, and mutagenic compounds, which include halogenated aromatics, derivatives of heavy metals, microbial toxins, tannins, dyes, sulfur compounds of coal and petroleum and pesticides. The bioremediation of agricultural residue, industrial as well as municipal wastes, fuel oils, lubricants, natural rubber products, and other synthetic polymers, which pollute the environment substantially, also constitutes an important component of the book. All biotechnological aspects of microbial transformations pertaining to biodegradation/bioremediation of hazardous wastes, ranging from screening methods for microbes with degradative potential, processes of degradation, strain improvement for enhanced biodegradation and elimination of xenobiotics of health and environmental concern have been dealt with.

The book intends to widen the scope of Applied Microbiology and Biotechnology in general and biotransformations in particular. It will provide an opportunity for scientists in the areas of biochemistry, food industry, environmental science and engineering and their implications in technologically feasible, environment friendly and economically viable bioremediation options. Also, it forms an interface between agro-industrial establishments and the academic world and will generate new thought provoking ideas for scientists of future generations for the safeguard of both human and animal health as well as the environment.

This book introduces readers to basic studies on and applied techniques involving lactic acid bacteria, including their bioengineering and industrial applications. It summarizes recent biotechnological advances in lactic acid bacteria for food and health, and provides detailed information on the applications of these bacteria in fermented foods. Accordingly, it offers a valuable resource for researchers and graduate students in the fields of food microbiology, bioengineering, fermentation engineering, food science, nutrition and health.

"The Value of BCG and TNF in Autoimmunity" provides an overview of current research and thinking related to tumor necrosis factor (TNF) induction and the use of the bacillus Calmette-Guerin (BCG) vaccine as potential treatment approaches to diverse forms of autoimmunity. BCG, commonly known as an anti-tuberculosis vaccine, is being explored in worldwide clinical trials as an approach to the treatment of certain forms of autoimmunity. The scope of research behind this therapeutic approach spans from the basic science of TNF signaling to research in diverse autoimmune disciplines, such as type 1 diabetes and multiple sclerosis.

Overall, the book focuses on the lessons that can be learned from the researchers' individual experiences and data, and provides a rationale for bringing the inexpensive, generic BCG vaccine to the forefront of clinical trials in different forms of autoimmunity.
Editor awarded 2005: Oprah Achievement Award," Top Health Breakthrough by a Female Scientist"Brings into one resource the international scientific literature on a unique way to treat autoimmunityProvides a different perspective on treatment approaches for certain autoimmune conditionsDiscusses TNF induction, rather than anti-TNF, as a therapeutic pathway for autoimmunity treatment"

This book sheds light on the major functions of microbial communities in aquaculture ecosystems, showing that by recycling nutrients, degrading organic matter and preventing disease outbreaks, a variety of microbes are truly beneficial to a wide range of aquaculture industries. It discusses how deteriorating environmental quality enables some microbial strains to trigger disease, describes the development of highly sustainable tools to improve water quality, and identifies crucial factors that endanger microbial homeostasis in aquaculture ecosystems. The book also covers post-antibiotic approaches for preventing and treating opportunistic microbial infections based on harnessing environmental and fish-associated microbial communities. Furthermore, it explores how manipulating and engineering these complex microbial communities using bio-agents such as probiotics, phages, natural nutritional additives, or with fine-tuned biofilters will open the door for new ways to develop a more sustainable and cost-effective aquaculture industry. Including an accessible presentation of modern high-throughput sequencing technology to identify host-microbial interactions in aquaculture ecosystems, this book is a valuable resource for scientists, aquaculture and fishery experts, sustainability enthusiasts and scholars in the areas of biology and marine agriculture.

The book starts with a general introduction into the relevance of systems biology for understanding tuberculosis. This will be followed by several chapters which describe the application of systems biology to various aspects of the study of the pathogen, Mycobacterium tuberculosis, and its interaction with the host. The book provides the reader with an account of how the new science of systems biology is providing novel insights into the ancient scourge of tuberculosis. It will also describe how systems biology can be applied to the control of tuberculosis, including the development of new treatments, vaccines and diagnostics.

This concise volume describes the latest, up-to-date theory, methodology, and applications of ABC transporters in microorganisms. The topics include the structure, physiology, and evolution of ABC transporters, as well as their special characteristics in specific microorganisms, including bacteria, yeast, trypanosomes, and malaria parasites. In particular, the book describes the most recent research and innovations relative to the role of ABC transporters in the design of strategies to circumvent drug resistance in microorganisms. Each chapter comprises an exhaustive review of the particular topic and provides insights into the future of the field, both from the scientific and clinical perspective. A skillful selection of topics and a panel of acknowledged experts ensure that this concise volume will be of exceptional importance to everyone involved in DNA superfamily research, as well as scientists interested in microbial physiology and multidrug resistance. It is essential reading for anyone involved in this field, and it is a recommended volume for all microbiology laboratories.

Advances in Applied Microbiology, Volume 103, continues the comprehensive reach of this widely read and authoritative review source in microbiology. Users will find invaluable references and information on a variety of areas, with this updated volume including chapters on antimicrobial resistance in Campylobacter species, microbial source tracking, modeling phage bacteria interactions, and bacterial anaerobic synthesis gas (syngas) and CO2 + H2 fermentation. Each eclectic volume in this series is supplemented by thematic volumes in areas such as Archaea and sick building syndrome.

Advances in Applied Microbiology, Volume 104, continues the comprehensive reach of this widely read and authoritative review source in microbiology. Users will find invaluable references and information on a variety of areas, with this updated volume including chapters covering Cold Shock Responses in Salmonella, Microbial Processes in Geotechnical Engineering, Microbial Diversity and Functional Analysis, The Mycosphere and Turnover of Contaminants, and the Enhancement of Metallosphaera Sedula Bioleaching by Targeted Recombination and Adaptive Laboratory Evolution.

Flagella-dependent motility is widespread throughout prokaryotes and is advantageous when nutrients are limited as a mechanism to migrate to more favorable environments and to compete with other micro-organisms. Flagella systems can also play an important role in additional processes, such as adhesion to substrates, biofilm formation, and host invasion in pathogenic bacteria. A variety of different classes of pili are found in prokaryotes and these structures also possess a diverse array of functions. Pili are essential for host colonization, virulence, and pathogenesis for many bacteria and, in the case of type IV pili, can also be employed for motility across solid surfaces. This book brings together some of the top scientists in the field and describes the current knowledge and latest research on prokaryotic pili and flagella. The emphasis is on the molecular biology, genetics, structure, assembly, and function of these structures. Topics include: biogenesis, structure, and function of various pili in Gram-negative and Gram-positive organisms * flagellar gene expression, structure, and assembly * the flagella motor * posttranslational modifications of flagella systems * lateral flagella systems * the origin and evolution of flagella * applications of flagella as a surface display and expression system * the flagella and pili of Archaea.

This volume focuses on mitochondrial RNA metabolism, emphasizing recent discoveries and technological advances in this fast moving area that increase our understanding of mitochondrial gene function. Topics addressed include the interplay of mitochondria with the nucleus and cytosol, structure-function connections, and relevance to human disease. Mitochondria are the powerhouses of the cell, and a great deal is known about mitochondrial energy metabolism. Less well known is the plethora of amazing mechanisms that have evolved to control expression of mitochondrial genomes. Several RNA processes and machineries in protozoa, plants, flies and humans are discussed, including: transcription and RNA polymerase mechanism; tRNA processing of 5' and 3' ends; mRNA maturation by nucleotide insertion/deletion editing and by RNA splicing; mRNA stability; and RNA import. Specialized factors and ribonucleoproteins (RNPs) examined include pentatricopeptide repeat (PPR) proteins, RNase P, polymerases, helicases, nucleases, editing and repair enzymes. Remarkable features of these processes and factors are either not found outside mitochondria, differ substantially among eukaryotic lineages, or are unique in biology.

Environmental sustainability is one of the biggest issues faced by the mankind. Rapid & rampant industrialization has put great pressure on the natural resources. To make our planet a sustainable ecosystem, habitable for future generations & provide equal opportunity for all the living creatures we not only need to make corrections but also remediate the polluted natural resources. The low-input biotechnological techniques involving microbes and plants can provide the solution for resurrecting the ecosystems. Bioremediation and biodegradation can be used to improve the conditions of polluted soil and water bodies. Green energy involving biofuels have to replace the fossil fuels to combat pollution & global warming. Biological alternatives (bioinoculants) have to replace harmful chemicals for maintaining sustainability of agro-ecosystems. The book will cover the latest developments in environmental biotech so as to use in clearing and maintaining the ecosystems for sustainable future.

This book gathers the latest findings on the microbial ecology of saline habitats, plant-microbe interactions under saline conditions, and saline soil reclamation for agricultural use. The content is divided into four main parts: Part I outlines the definition of salinity, its genesis and impacts, and microbial diversity in saline habitats. Part II deals with impact of salinity on microbial and plant life/health. Part III highlights plant - microbe interactions in saline environments, and Part IV describes strategies for mitigation and reclamation of saline soils. The salinization of arable land is steadily increasing in many parts of the world. An excessive concentration of soluble salts (salinity) in soils or irrigation water adversely affects plant growth and survival. This problem is exacerbated in arid and semiarid areas due to their low precipitation and high evaporation rates. In turn, poor management practices and policies for using river water for the irrigation of agriculture crops often lead to the secondary salinization of soils. Considering the growing demands of a constantly expanding population, understanding the microbial ecology and interactions under saline conditions and their implications for sustainable agriculture is of utmost importance. Providing both an essential review of the status quo and a future outlook, this book represents a valuable asset for researchers, environmentalists and students working in microbiology and agriculture. .

This book focuses on the regulation of transcription and translation in Archaea and arising insights into the evolution of RNA processing pathways. From synthesis to degradation and the implications of gene expression, it presents the current state of knowledge on archaeal RNA biology in 13 chapters. Topics covered include the modification and maturation of RNAs, the function of small non-coding RNAs and the CRISPR-Cas defense system. While Archaea have long been considered exotic microbial extremophiles, they are now increasingly being recognized as important model microorganisms for the study of molecular mechanisms conserved across the three domains of life, and with regard to the relevance of similarities and differences to eukaryotes and bacteria. This unique book offers a valuable resource for all readers interested in the regulation of gene expression in Archaea and RNA metabolism in general.

Biodegradation has been the subject of active concern for the past 40 years. Recently, the field has expanded to encompass a wide variety of chemicals, a broad array of issues, and the development of the new bioremediation industry. This book presents the basic principles of biodegradation and shows how these principles relate to bioremediation. Authored by a world-renowned environmental microbiologist, Biodegradation and Bioremediation presents microbiological, chemical, toxicological, environmental, engineering, and technological aspects of the subject.
* Praise for the First Edition
* "Serves an important function in presenting a complete picture of biodegradation in the environment. I t] provides biologists, chemists and engineers interested in this process with information complementary to their own fields and thus belongs on the shelf of everybody active in the study of biodegradation and bioremediation."
* --JOURNAL OF CONTAMINANT HYDROLOGY
* "A compendious account of the field in a form accessible to microbiologists, chemists, toxicologists and environmental scientists and engineers. His book succeeds admirably...Well indexed, its diagrams large and clear....It will serve as an excellent text for advanced undergraduate and postgraduate courses and as an invaluable source of reference to all those with a research interest in this expanding field."
* --SOCIETY FOR GENERAL MICROBIOLOGY QUARTERLY
* "The book could serve as a text for an upper-level or graduate class in the principles of biodegradation and bioremediation for microbiologists and environmental engineers. In summary, Alexander has prepared a cogent and well-organized review of the principles of biodegradation in a book that should prove useful to a great many people."
* --JOURNAL OF ENVIRONMENTAL QUALITY
* "Provides a unity of style, and generally, an excellent intellectual flow between topics....Alexander does a spectacular job of addressing the kinetics of degradation reactions--the discussion is one of the best I have seen, especially for those not well versed in mathematics."
* --BIOSCIENCE
* "Written by a very knowledgeable scientist...A very timely book...Recommended as a valuable resource for environmental scientists, engineers, or other persons with an interest in the use of organisms for environmental decontamination and a need for better insight into the principles underlying bioremediation."
* --SOIL SCIENCE