Advances in Microbial Physiology, Volume 71, continues the long tradition of topical, important, cutting-edge reviews in microbiology. The book contains updates in the field, with comprehensive chapters covering The Microbiology of Ruthenium Complexes, The role of plant growth-promoting bacteria in metal phytoremediation, the Mechanism and Role of Globin Coupled Sensor Signaling, Cytochrome bd and gaseous ligands in bacterial physiology, and Haem-Based Sensors of O2: Lessons and Perspectives.

This is a completely revised edition, including new material, from 'Culture Media for Food Microbiology' by J.E.L. Corry et al., published in Progress in Industrial Microbiology, Volume 34, Second Impression 1999.

Written by the Working Party on Culture Media, of the International Committee on Food Microbiology and Hygiene, this is a handy reference for microbiologists wanting to know which media to use for the detection of various groups of microbes in food, and how to check their performance.

The first part comprises reviews, written by international experts, of the media designed to isolate the major groups of microbes important in food spoilage, food fermentations or food-borne disease. The history and rationale of the selective agents, and the indicator systems are considered, as well as the relative merits of the various media. The second part contains monographs on approximately 90 of the most useful media.

The first edition of this book has been frequently quoted in standard methods, especially those published by the International Standards Organisation (ISO) and the European Standards Organisation (CEN), as well as in the manuals of companies manufacturing microbiological media. In this second edition, almost all of the reviews have been completely rewritten, and the remainder revised. Approximately twelve monographs have been added and a few deleted. This book will be useful to anyone working in laboratories examining food - industrial, contract, medical, academic or public analyst, as well as other microbiologists, working in the pharmaceutical, cosmetic and clinical (medical and veterinary) areas - particularly with respect to quality assurance of media and methods in relation to laboratory accreditation.

This volume looks at the importance of V. cholerae as an infection agent, and explores the latest techniques used to study it. The chapters in this book cover topics such as the biology of V. cholerae; laboratory maintenance and culturing; various animals models developed to explain pathogenesis and factors for environmental survival; and holistic approaches that include proteomics, metabolomics, and high-throughput screening. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and authoritative, Vibrio cholerae: Methods and Protocols is a valuable resource for both novice microbiologists who want to focus their studies on V. cholerae, and experienced researchers and teachers who want to improve their knowledge and skills in this growing field.

A proper understanding of the diversity, systematics, and nomenclature of microbes is increasingly important in many branches of biological science. The molecular approach to phylogenetic analysis - pioneered by Carl Woese in the 1970s and leading to the three-domain model (Archaea, Bacteria, Eucarya) - has revolutionized our thinking about evolution in the microbial world. The technological innovation of modern molecular biology and the rapid advancement in computational science have led to a flood of nucleic acid sequence information, bioinformatic tools, and phylogenetic inference methods. Phylogenetic analysis has long played a central role in microbiology and the emerging fields of comparative genomics and phylogenomics require substantial knowledge and understanding of phylogenetic analysis and computational methods. In this book, leading scientists from around the world explore current concepts in molecular phylogeny and their application with respect to microorganisms. The authors describe the different approaches applied today to elucidate the molecular phylogeny of prokaryotes (and eukaryotic protists) and review current phylogenetic methods, techniques, and software tools. Topics covered include: a historical overview, computational tools, multilocus sequence analysis, 16S rRNA phylogenetic trees, rooting of the universal tree of life, applications of conserved indels, lateral gene transfer, endosymbiosis, and the evolution of plastids.

This book provides information about the nontarget nature of selected soil enzymes which are implicated in soil fertility and health and the methods for their assay. It also shows how these soil enzymes are affected by two different pesticides, buprofezin and acephate, used both extensively and intensively in modern agriculture.

This book reviews the wide range of products and applications of solid state fermentation as well as the development of this cultivation technology over the last years. In this book, readers will also learn about the challenges of solid state fermentation, including process management, reactor design, scale-up and the formation of process-specific products. Solid fermentation is a traditional cultivation technique of food technology and involves all cultivations of microorganisms on a solid substrate without free liquid phase. In the course of development of Biotechnology it was replaced by liquid cultivation mainly in the western countries. Over the past few years, solid-state fermentation is now becoming more important and has moved more back into focus. Especially, it is suitable for the cultivation of filamentous organisms, like ascomycetes and basidiomycetes, but also for various yeasts and bacteria. The products and applications of solid-state fermentation are as diverse as the microorganisms. They range from enzyme production to the production of antibiotics and pigments to the use in environmental technology and energy production.

This book presents a compilation of case studies from different countries on achieving agricultural sustainability. The book stresses that, in order to meet the needs of our rapidly growing population, it is imperative to increase agricultural productivity. If global food production is to keep pace with an increasing population, while formulating new food production strategies for developing countries, the great challenge for modern societies is to boost agricultural productivity. Today, the application of chemicals to enhance plant growth or induced resistance in plants is limited due to the negative effects of chemical treatment and the difficulty of determining the optimal concentrations to benefit the plant. In the search for alternative means to solve these problems, biological applications have been extensively studied. Naturally occurring plant-microbe-environment interactions are utilized in many ways to enhance plant productivity. As such, a greater understanding of how plants and microbes coexist and benefit one another can yield new strategies to improve plant productivity in the most sustainable way. Developing sustainable agricultural practices requires understanding both the basic and applied aspects of agriculturally important microorganisms, with a focus on transforming agricultural systems from being nutrient-deficient to nutrient-rich. This work is divided into two volumes, the aim being to provide a comprehensive description and to highlight a holistic approach, respectively. Taken together, the two volumes address the fundamentals, applications, research trends and new prospects of agricultural sustainability.  Volume one consists of two sections, with the first addressing the role of microbes in sustainability, and the second exploring beneficial soil microbe interaction in several economically important crops. Section I elucidates various mechanisms and beneficial natural processes that enhance soil fertility and create rhizospheric conditions favourable for high fertility and sustainable soil flora. It examines the mechanism of action and importance of rhizobacteria and mycorrhizal associations in soil. In turn, section II presents selected case studies involving economically important crops. This section explains how agriculturally beneficial microbes have been utilized in sustainable cultivation with high productivity. Sustainable food production without degrading the soil and environmental quality is a major priority throughout the world, making this book a timely addition. It offers a comprehensive collection of information that will benefit students and researchers working in the field of rhizospheric mechanisms, agricultural microbiology, biotechnology, agronomy and sustainable agriculture, as well as policymakers in the area of food security and sustainable agriculture.

Advances in Microbial Physiology, Volume 70 continues the long tradition of topical, important, cutting-edge reviews in microbiology with this new volume covering a variety of topics, including Bacterial Hemoprotein Sensors of NO: H-NOX and NosP, Manganese in Marine Microbiology, Nutritional Immunity and Fungal Pathogenesis: The Struggle for Micronutrients at the Host-Pathogen Interface, Metal-Based Combinations that Target Protein Synthesis by Fungi, Transition Metal Homeostasis in Streptococcus Pyogenes and Streptococcus Pneumoniae, Copper and Antibiotics: Discovery, Modes of Action, and Opportunities for Medicinal Applications, Metal Resistance and Its Association with Antibiotic Resistance, and The Role of Intermetal Competition and Mis-Metalation in Metal Toxicity.

This book covers both the molecular basics of fungal stress response strategies as well as biotechnological applications thereof. The complex regulatory mechanisms of stress response pathways are presented in a concise and well-readable manner. Also, light will be shed on the interconnection of pathways responding to different types of stress. Profound knowledge of stress responses in yeast and filamentous fungi is crucial for further optimization of industrial processes. Applications are manifold, for example in fungicide development, for improving the resistance of crop plants to fungal pathogens, but also in medicine to help curing fungal infections. The book targets researchers from academia and industry, as well as graduate students interested in microbiology, mycology and biomedicine.

This book presents a summary of terrestrial microbial processes, which are a key factor in supporting healthy life on our planet. The authors explain how microorganisms maintain the soil ecosystem through recycling carbon and nitrogen and then provide insights into how soil microbiology processes integrate into ecosystem science, helping to achieve successful bioremediation as well as safe and effective operation of landfills, and enabling the design of composting processes that reduce the amount of waste that is placed in landfills. The book also explores the effect of human land use, including restoration on soil microbial communities and the response of wetland microbial communities to anthropogenic pollutants. Lastly it discusses the role of fungi in causing damaging, and often lethal, infectious diseases in plants and animals.

Viral Proteases and Their Inhibitors provides a thorough examination of viral proteases from their molecular components, to therapeutic applications. As information on three dimensional structures and biological functions of these viral proteases become known, unexpected protein folds and unique mechanisms of proteolysis are realized. This book investigates how this facilitates the design and development of potent antiviral agents used against life-threatening viruses. Users will find descriptions of each virus that detail the structure and function of viral proteases, discuss the design and development of inhibitors, and analyze the structure-activity relationships of inhibitors. This book is ideal biochemists, virologists and those working on antiviral agents.

The fascinating, untold story of the air we breathe, the hidden life it contains, and invisible dangers that can turn the world upside down

Every day we draw in two thousand gallons of air—and thousands of living things. From the ground to the stratosphere, the air teems with invisible life. This last great biological frontier remains so mysterious that it took over two years for scientists to finally agree that the Covid pandemic was caused by an airborne virus.

In Air-Borne, award-winning New York Times columnist and author Carl Zimmer leads us on an odyssey through the living atmosphere and through the history of its discovery. We travel to the tops of mountain glaciers, where Louis Pasteur caught germs from the air, and follow Amelia Earhart and Charles Lindbergh above the clouds, where they conducted groundbreaking experiments. We meet the long-forgotten pioneers of aerobiology including William and Mildred Wells, who tried for decades to warn the world about airborne infections, only to die in obscurity.

Air-Borne chronicles the dark side of aerobiology with gripping accounts of how the United States and the Soviet Union clandestinely built arsenals of airborne biological weapons designed to spread anthrax, smallpox, and an array of other pathogens. Air-Borne also leaves readers looking at the world with new eyes—as a place where the oceans and forests loft trillions of cells into the air, where microbes eat clouds, and where life soars thousands of miles on the wind.

Weaving together gripping history with the latest reporting on Covid and other threats to global health, Air-Borne surprises us on every page as it reveals the hidden world of the air.

This book gives an overview on techniques and future perspectives of various aspects of waste biomass management. It also presents the economic and environmental evaluation, and also the monetary value-benefits and sustainability of the different processes. Recycling processes of lignocellulosic biomass from palm oil mill waste are covered, as well as from sugar industry waste and agriculture waste. It also includes thermal and non-thermal technologies for resource recovery from waste biomass. Challenges in the reuse and recycling of waste biomass are discussed, i.e., the hygienic safety in biomass management and bioremediation technologies for conversion into valuable products. The book is aiming at scientists, researchers and students alike, who are working in the research areas pertaining to waste management

Antimicrobial Stewardship (AMS), Volume Two includes the experience of ESGAP workshops and courses on antibiotic stewardship since 2012. It combines clinical and laboratory information about AMS, with a focus on human medicine. The ESCMID study group on antibiotic policies (ESGAP) is one of the most productive groups in the field, organizing courses and workshops. This book is an ideal tool for the participants of these workshops. With short chapters (around 1500 words) written on different topics, the authors insisted on the following points: A 'hands on', practical approach, tips to increase success, a description of the most common mistakes, a global picture (out- and inpatient settings, all countries) and a short list of 10-20 landmark references.

This book provides authentic and comprehensive information on the concepts, methods, functional details and applications of nano-emulsions. Following an introduction to the applications of nanotechnology in the development of foods, it elaborates on food-grade nano-emulsion and their significance, discusses various techniques and methods for producing food-grade nano-emulsion, and reviews the main ingredient and component of food-grade nano-emulsions. Further, the book includes a critical review of the engineering aspect of fabricating food-grade nano-emulsions and describe recently developed vitamin encapsulated nano-systems. In closing, it discuss the challenges and opportunities of characterizing nano-emulsified systems, the market risks and opportunities of nano-emulsified foods, and packaging techniques and safety issues - including risk identification and risk management - for nano-foods. The book offers a unique guide for scientists and researchers working in this field. It will also help researchers, policymakers, industry personnel, journalists and the general public to understand food nanotechnology in great detail.

This book focuses on the diversity of yeasts in aquatic and terrestrial ecosystems, including the association of yeasts with insects, invertebrate and vertebrate animals. It offers an overview of the knowledge accumulated in the course of more than 60 years of research and is closely connected with the volume Yeasts in Natural Ecosystems: Ecology by the same editors. In view of the rapid decline of many natural habitats due to anthropogenic activities and climate change, the need to study biodiversity is pressing. Rising temperatures threaten species inhabiting cold and aquatic environments, and species in terrestrial ecosystems are endangered by habitat fragmentation or loss. Most of our knowledge of intrinsic properties (autoecology) of yeasts reported throughout this book is derived from laboratory experiments with pure cultures. Accordingly, the importance of culture collections for ecological studies is highlighted by presenting an overview of worldwide available yeast strains and their origins. All of the chapters were written by leading international yeast research experts, and will appeal to researchers and advanced students in the field of microbial diversity.

Microbial infections still represent one of the major causes of mortality and morbidity worldwide. Irrational usage of antimicrobials has lead to increased resistance, causing clinical, social and economical disabilities. Therefore, one of the major challenges of scientists is to develop novel alternative methods to handle infections and reduce resistance and other side effects produced by the actual therapies. The aim of this book is to offer a perspective on novel approaches to handle infections by using naturally-derived products in order to modulate the virulence of pathogens, without the risk of developing resistance. We intend to highlight the utility of microbial, vegetal and animal-derived compounds with potential antimicrobial activity by exploiting their effect on microbial virulence. Furthermore, this book aims to reveal the potential to assimilate recent bio-technological findings, like the usage of nanotechnology as efficient shuttles for stabilizing, improved targeting and the controlled release of natural products in order to efficiently fight infections.

This book presents the latest results related to photocatalytic inactivation/killing of microorganisms, which is a promising alternative disinfection method that produces less or even no disinfection byproduct. The book is divided into 13 chapters, which introduce readers to the latest developments in the photocatalytic disinfection of microorganisms, examine essential photocatalytic (PC) and photoelectrocatalytic (PEC) disinfection studies, and forecast and make recommendations for the further development of PC and PEC disinfection. Bringing together contributions by various leading research groups worldwide, it offers a valuable resource for researchers and the industry alike, as well as the general public. Taicheng An, PhD, is Chair Professor and Director at the Institute of Environmental Health and Pollution Control, School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou, China. Huijun Zhao, PhD, is Chair Professor and Director at the Centre for Clean Environment and Energy & Griffith School of Environment, Griffith University, Australia. Po Keung Wong, PhD, is a Professor at the School of Life Sciences, the Chinese University of Hong Kong, Hong Kong SAR, China.

This detailed volume provides a toolbox for designing constructs, tackling expression and solubility issues, handling membrane proteins and protein complexes, and exploring innovative engineering of E. coli. The topics are largely grouped under four parts: high-throughput cloning, expression screening, and optimization of expression conditions, protein production and solubility enhancement, case studies to produce challenging proteins and specific protein families, as well as applications of E. coli expression. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Heterologous Gene Expression in E. coli: Methods and Protocols serves molecular biologists, biochemists and structural biologists, those in the beginning of their research careers to those in their prime, to give both an historical and modern overview of the methods available to express their genes of interest in this exceptional organism.

This book covers the applications of fungi used in biorefinery technology. As a great many different varieties of fungal species are available, the text focuses on the various applications of fungi for production of useful products including organic acids (lactic, citric, fumaric); hydrolytic enzymes (amylase, cellulases, xylanases, ligninases, lipases, pectinases, proteases); advanced biofuels (ethanol, single cell oils); polyols (xylitol); single cell protein (animal feed); secondary metabolites; and much more.

This Volume presents methods for analysing and quantifying petroleum, hydrocarbons and lipids, based on their chemical and physical properties as well as their biological effects. It features protocols for extracting hydrocarbons from solid matrices, water and air, and a dedicated chapter focusing on volatile organic compounds. Several approaches for separating and detecting diverse classes of hydrocarbons and lipids are described, including: (tandem) gas chromatography (GC) coupled with mass spectrometry (MS) or flame-ionisation detection, Fourier-transform induction-coupled-resonance MS, and fluorescence-based techniques. The book details high-performance liquid chromatography MS for microbial lipids, as well as a combination of techniques for naphthenic acids. Two chapters focus on quantifying bioavailable hydrocarbon fractions by using cyclodextrin sorbents and bacterial bioreporters, respectively, while a closing chapter explains how compound-specific stable-isotope analysis can be used to measure the fate of hydrocarbons in the environment. Hydrocarbon and Lipid Microbiology Protocols There are tens of thousands of structurally different hydrocarbons, hydrocarbon derivatives and lipids, and a wide array of these molecules are required for cells to function. The global hydrocarbon cycle, which is largely driven by microorganisms, has a major impact on our environment and climate. Microbes are responsible for cleaning up the environmental pollution caused by the exploitation of hydrocarbon reservoirs and will also be pivotal in reducing our reliance on fossil fuels by providing biofuels, plastics and industrial chemicals. Gaining an understanding of the relevant functions of the wide range of microbes that produce, consume and modify hydrocarbons and related compounds will be key to responding to these challenges. This comprehensive collection of current and emerging protocols will facilitate acquisition of this understanding and exploitation of useful activities of such microbes.