Focusing on new methods and techniques developed to address longstanding questions about the Golgi complex, this volume explores a diverse set of chapters, ranging from live and fixed cell imaging techniques to in vitro biochemical reconstitution systems. Each chapter provides a detailed set of specific instructions, which should enable anyone to successfully complete the assays. Written for the highly successful Methods in Molecular Biology series program, chapters include brief introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips from the experts on troubleshooting and avoiding known pitfalls. Practical and detailed, The Golgi Complex: Methods and Protocols will aid both new and established researchers in the field by providing strong hands-on instructions that can be directly applied to their research programs.

The current volume, "Medicinal and Aromatic Plants of the Middle-East" brings together chapters on selected, unique medicinal plants of this region, known to man since biblical times. Written by leading researchers and scientists, this volume covers both domesticated crops and wild plants with great potential for cultivation. Some of these plants are well-known medicinally, such as opium poppy and khat, while others such as apharsemon and citron have both ritual and medicinal uses. All have specific and valuable uses in modern society. As such, it is an important contribution to the growing field of medicinal and aromatic plants. This volume is intended to bring the latest research to the attention of the broad range of botanists, ethnopharmacists, biochemists, plant and animal physiologists and others who will benefit from the information gathered therein. Plants know no political boundaries, and bringing specific folklore to general medical awareness can only be for the benefit of all.

Analysis and Control of Boolean Networks presents a systematic new approach to the investigation of Boolean control networks. The fundamental tool in this approach is a novel matrix product called the semi-tensor product (STP). Using the STP, a logical function can be expressed as a conventional discrete-time linear system. In the light of this linear expression, certain major issues concerning Boolean network topology - fixed points, cycles, transient times and basins of attractors - can be easily revealed by a set of formulae. This framework renders the state-space approach to dynamic control systems applicable to Boolean control networks. The bilinear-systemic representation of a Boolean control network makes it possible to investigate basic control problems including controllability, observability, stabilization, disturbance decoupling etc.

This book addresses in detail multifaceted approaches to boosting nutrient use efficiency (NUE) that are modified by plant interactions with environmental variables and combine physiological, microbial, biotechnological and agronomic aspects. Conveying an in-depth understanding of the topic will spark the development of new cultivars and strains to induce NUE, coupled with best management practices that will immensely benefit agricultural systems, safeguarding their soil, water, and air quality. Written by recognized experts in the field, the book is intended to provide students, scientists and policymakers with essential insights into holistic approaches to NUE, as well as an overview of some successful case studies. In the present understanding of agriculture, NUE represents a question of process optimization in response to the increasing fragility of our natural resources base and threats to food grain security across the globe. Further improving nutrient use efficiency is a prerequisite to reducing production costs, expanding crop acreage into non-competitive marginal lands with low nutrient resources, and preventing environmental contamination. The nutrients most commonly limiting plant growth are N, P, K, S and micronutrients like Fe, Zn, B and Mo. NUE depends on the ability to efficiently take up the nutrient from the soil, but also on transport, storage, mobilization, usage within the plant and the environment. A number of approaches can help us to understand NUE as a whole. One involves adopting best crop management practices that take into account root-induced rhizosphere processes, which play a pivotal role in controlling nutrient dynamics in the soil-plant-atmosphere continuum. New technologies, from basic tools like leaf color charts to sophisticated sensor-based systems and laser land leveling, can reduce the dependency on laboratory assistance and manual labor. Another approach concerns the development of crop plants through genetic manipulations that allow them to take up and assimilate nutrients more efficiently, as well as identifying processes of plant responses to nutrient deficiency stress and exploring natural genetic variation. Though only recently introduced, the ability of microbial inoculants to induce NUE is gaining in importance, as the loss, immobilization, release and availability of nutrients are mediated by soil microbial processes.

This book compiles and presents new developments in statistical causal inference. The accompanying data and computer programs are publicly available so readers may replicate the model development and data analysis presented in each chapter. In this way, methodology is taught so that readers may implement it directly. The book brings together experts engaged in causal inference research to present and discuss recent issues in causal inference methodological development. This is also a timely look at causal inference applied to scenarios that range from clinical trials to mediation and public health research more broadly. In an academic setting, this book will serve as a reference and guide to a course in causal inference at the graduate level (Master's or Doctorate). It is particularly relevant for students pursuing degrees in statistics, biostatistics, and computational biology. Researchers and data analysts in public health and biomedical research will also find this book to be an important reference.

The aim of this manual is to provide a comprehensive guide to the methods involved in collecting, preparing and screening plants for bioactive properties for manipulating key ruminal fermentation pathways and against gastrointestinal pathogens. The manual will better equip the reader with methodological approaches to initiate screening programmes to test for bioactivity in native plants and find natural alternatives to chemicals for manipulating ruminal fermentation and gut health. The manual provides isotopic and non-isotopic techniques to efficiently screen plants or plant parts for a range of potential bioactives for livestock production. Each chapter has been contributed by experts in the field and methods have been presented in a format that is easily reproducible in the laboratory. It is hoped that this manual will be of great value to students, researchers and those involved in developing efficient and environmentally friendly livestock production systems."

r ed Algae in Genome Age book most people reading this book have childhood memories about being enthralled at the beach with those rare and mysterious living forms we knew as seaweeds. We were fascinated at that time by their range of red hues and textures, and most of all, their exotic beauty. t o a scientist, red algae represent much more than apparent features. t heir complex forms have attracted morphologists for centuries; their intricate life cycles have brought more than one surprise to plant biologists familiar only with ferns and fowering plants; their unusual tastes have been appreciated for mill- nia, and their valuable chemical constituents have been exploited for nearly as long, most recently by biotech companies; their diversity in marine, freshwater, and t- restrial environments has offered centuries of engaging entertainment for botanists eager to arrange them in orderly classifcation systems; still, the red algae continue to teach us how many more challenges need to be overcome in order to understand their biodiversity, biological functions, and evolutionary histories.

Does nature have intrinsic value? Should we be doing more to save wilderness and ocean ecosystems? What are our duties to future generations of humans? Do animals have rights? This revised edition of "Life Science Ethics" introduces these questions using narrative case studies on genetically modified foods, use of animals in research, nanotechnology, and global climate change, and then explores them in detail using essays written by nationally-recognized experts in the ethics field.

Part I introduces ethics, the relationship of religion to ethics, how we assess ethical arguments, and a method ethicists use to reason about ethical theories. Part II demonstrates the relevance of ethical reasoning to the environment, land, farms, food, biotechnology, genetically modified foods, animals in agriculture and research, climate change, and nanotechnology. Part III presents case studies for the topics found in Part II.

The 21st ESACT conference was held in the beautiful surroundings of the CityWest Hotel resort in Dublin, Ireland. For the first time in ESACT history the number of participants exceeded 900: a sign of the ever increasing importance of this area. The conference commenced on Sunday June 5th with two sets of parallel workshops on the subjects listed below. An additional workshop was held on Monday lunchtime of the conferenceProcess Analytical Technology (PAT), Quality by Design (QbD) and other recent regulatory developments.

2. Innovative media products for the 21st century biopharmaceutical industry.

3. The impact of high titre media feed-streams on monoclonal antibody purification.

4. Advances in genomics and proteomics.

5. Stem Cell Technology: new developments and clinical applications.

Presents a unique study of Integrative Problem-Solving (IPS). The consideration of 'Decadence' is essential in the scientific study of environmental and other problems and their rigorous solution, because the broad context within which the problems emerge can affect their solution. Stochastic reasoning underlines the conceptual and methodological framework of IPS, and its formulation has a mathematical life of its own that accounts for the multidisciplinarity of real world problems, the multisourced uncertainties characterizing their solution, and the different thinking modes of the people involved. Only by interpolating between the full range of disciplines (including stochastic mathematics, physical science, neuropsychology, philosophy, and sociology) and the associated thinking modes can scientists arrive at a satisfactory account of problem-solving, and be able to distinguish between a technically complete problem-solution, and a solution that has social impact.

Integrated bioinformatics solutions have become increasingly valuable in past years, as technological advances have allowed researchers to consider the potential of omics for clinical diagnosis, prognosis, and therapeutic purposes, and as the costs of such techniques have begun to lessen. In Bioinformatics Methods in Clinical Research, experts examine the latest developments impacting clinical omics, and describe in great detail the algorithms that are currently used in publicly available software tools. Chapters discuss statistics, algorithms, automated methods of data retrieval, and experimental consideration in genomics, transcriptomics, proteomics, and metabolomics. Composed in the highly successful Methods in Molecular Biology series format, each chapter contains a brief introduction, provides practical examples illustrating methods, results, and conclusions from data mining strategies wherever possible, and includes a Notes section which shares tips on troubleshooting and avoiding known pitfalls.

Informative and ground-breaking, Bioinformatics Methods in Clinical Research establishes a much-needed bridge between theory and practice, making it an indispensable resource for bioinformatics researchers."

Symbiotic Fungi Principles and Practice presents current protocols for the study of symbiotic fungi and their interactions with plant roots, such as techniques for analyzing nutrient transfer, ecological restoration, microbial communication, and mycorrhizal bioassays, AM inoculum procedures and mushroom technology.

The protocols offer practical solutions for researchers and students involved in the study of symbiotic microorganisms. The volume will be of great use for basic research, biotechnological applications, and the development of commercial products."

In its extensively revised and updated Second Edition, this book provides a solid foundation for readers interested in clinical research. Discussion encompasses genetic, pharmacoepidemiologic and implementation research.

All chapters have been updated with new information and many new tables have been added to elucidate key points. The book now offers discussion on how to handle missing data when analyzing results, and coverage of Adaptive Designs and Effectiveness Designs and new sections on Comparative Effectiveness Research and Pragmatic Trials. Chapter 6 includes new material on Phase 0 Trials, expanded coverage of Futility Trials, a discussion of Medical Device approval, Off Label Drug use and the role of the FDA in regulating advertising. Additional new information includes the role of pill color and shape in association with the placebo effect and an examination of issues surrounding minority recruitment. The final chapter offers a new section on manuscript preparation along with a discussion of various guidelines being adopted by journals: CONSORT, STROBE, PRISMA, MOOSE and others; and coverage of Conflicts of Interest, Authorship, Coercive Citation, and Disclosures in Industry-Related Associations.

Building on the strengths of its predecessor in its comprehensive approach and authoritative advice, the new edition offers more of what has made this book a popular, trusted resource for students and working researchers alike.

The idea of creation and creativity is among the most powerful and pervasive of metaphors bequeathed to the modern world by the scriptures of Judaism, Christianity and Islam. Twelve specialists here explore the original sources and contemporary manifestations of the theme in both high and low culture, from the Book of Genesis to James Joyce's Ulysses, Children of Gebalawi by the Egyptian novelist Naguib Mahfouz, and the Polish poetry of Wislawa Szymborska, and to popular films, such as Bruce Almighty and Animatrix, and animation films for children. Even current debates on genetics and ecology and the public exhibition of plastinated human bodies invoke these same themes, and make this volume a topical contribution to cultural studies today. Jonneke Bekkenkamp, Why on Earth? Creation and Creativity in the Vocabularies of Patricia de Martelaere, Wislawa Szymborska and Julia Cameron Athalya Brenner, Recreating the Biblical Creation for Western Children: Provisional Reflections on Some Case Studies Wim Drees, Vocabularies of Creation and Creativity in Debates on Genetics and Ecology Jan Willem van Henten, Playing God in the Movies: Bruce Almighty and the Preposterous History of Genesis 1:26-27 Alistair Hunter, Creation out of (almost) Nothing or Does God Wear Genes? Alison Jasper, Mysteries under Your Skin David Jasper, 'Down through all Christian minstrelsy': Genesis, James Joyce and Contemporary Vocabularies of Creation Louise Joy Lawrence, Tracing Tricksters: Creation and Creativity in John's Gospel Richard van Leeuwen, Creation and Revelation in Naguib Mahfouz's Novel Children of Gebelawi Lloyd Ridgeon, Is the God of Islam an Evil Creator? Caroline Vander Stichele and Todd Penner, Terminatrix: Visualizing the End of Creation in Animatrix

The use of computational methods in statistics to face complex problems and highly dimensional data, as well as the widespread availability of computer technology, is no news. The range of applications, instead, is unprecedented. As often occurs, new and complex data types require new strategies, demanding for the development of novel statistical methods and suggesting stimulating mathematical problems. This book is addressed to researchers working at the forefront of the statistical analysis of complex systems and using computationally intensive statistical methods.

This interdisciplinary thesis introduces a systems biology approach to study the cell fate decision mediated by autophagy. A mathematical model of interaction between Autophagy and Apoptosis in mammalian cells is proposed. In this dynamic model autophagy acts as a gradual response to stress (Rheostat) that delays the initiation of bistable switch of apoptosis to give the cells an opportunity to survive. The author shows that his dynamical model is consistent with existing quantitative measurements of time courses of autophagic responses to cisplatin treatment. To understand the function of this response in cancer cells, he has provided a systems biology experimental framework to study quantitative and dynamical aspects of autophagy in single cancer cells using live-cell imaging and quantitative fluorescence microscopy. This framework can provide new insights on function of autophagic response in cancer cells.

Together, the volumes in this series present all of the data needed at various length scales for a multidisciplinary approach to modeling and simulation of flows in the cardiovascular and ventilatory systems, especially multiscale modeling and coupled simulations. The cardiovascular and respiratory systems are tightly coupled, as their primary function is to supply oxygen to, and remove carbon dioxide from, the body's cells. Because physiological conduits have deformable and reactive walls, macroscopic flow behavior and prediction must be coupled to nano- and microscopic events in a corrector scheme of regulated mechanism. Therefore, investigation of flows of blood and air in physiological conduits requires an understanding of the biology, chemistry, and physics of these systems, together with the mathematical tools to describe their functioning in quantitative terms. The present volume focuses on macroscopic aspects of the cardiovascular and respiratory systems in normal conditions, i.e., anatomy and physiology, as well as the acquisition and processing of medical images and physiological signals. * Reviews the anatomy and physiology of blood circulation and the body's ventilation * Reviews biological data for a better understanding of macroscopic scale processes * Describes the signals and images that are used to explore system function and as input data for computations

This is the first book entirely dedicated to Intravital Microscopy. It provides the reader with a broad overview of the main applications of Intravital Microscopy in various areas of the biomedical field. The book contains accurate descriptions of the state of the art methodologies used to image various organs at different level of resolution, ranging from whole tissue down to sub-cellular structures. Moreover, it is an extremely valuable guide to scientists that want to adopt this powerful technique and do not have experience with animal models and microscopy.

Life is produced by the interplay of water and biomolecules. This book deals with the physicochemical aspects of such life phenomena produced by water and biomolecules, and addresses topics including "Protein Dynamics and Functions," "Protein and DNA Folding," and "Protein Amyloidosis." All sections have been written by internationally recognized front-line researchers. The idea for this book was born at the 5th International Symposium "Water and Biomolecules," held in Nara city, Japan, in 2008. Written for: Scientists, academic libraries, advanced students

This volume presents a compelling collection of state-of-the-art work in algorithmic computational biology, honoring the legacy of Professor Bernard M.E. Moret in this field. Reflecting the wide-ranging influences of Prof. Moret's research, the coverage encompasses such areas as phylogenetic tree and network estimation, genome rearrangements, cancer phylogeny, species trees, divide-and-conquer strategies, and integer linear programming. Each self-contained chapter provides an introduction to a cutting-edge problem of particular computational and mathematical interest. Topics and features: addresses the challenges in developing accurate and efficient software for the NP-hard maximum likelihood phylogeny estimation problem; describes the inference of species trees, covering strategies to scale phylogeny estimation methods to large datasets, and the construction of taxonomic supertrees; discusses the inference of ultrametric distances from additive distance matrices, and the inference of ancestral genomes under genome rearrangement events; reviews different techniques for inferring evolutionary histories in cancer, from the use of chromosomal rearrangements to tumor phylogenetics approaches; examines problems in phylogenetic networks, including questions relating to discrete mathematics, and issues of statistical estimation; highlights how evolution can provide a framework within which to understand comparative and functional genomics; provides an introduction to Integer Linear Programming and its use in computational biology, including its use for solving the Traveling Salesman Problem. Offering an invaluable source of insights for computer scientists, applied mathematicians, and statisticians, this illuminating volume will also prove useful for graduate courses on computational biology and bioinformatics.

The model-based investigation of motions of anthropomorphic systems is an important interdisciplinary research topic involving specialists from many fields such as Robotics, Biomechanics, Physiology, Orthopedics, Psychology, Neurosciences, Sports, Computer Graphics and Applied Mathematics. This book presents a study of basic locomotion forms such as walking and running is of particular interest due to the high demand on dynamic coordination, actuator efficiency and balance control. Mathematical models and numerical simulation and optimization techniques are explained, in combination with experimental data, which can help to better understand the basic underlying mechanisms of these motions and to improve them. Example topics treated in this book are * Modeling techniques for anthropomorphic bipedal walking systems * Optimized walking motions for different objective functions * Identification of objective functions from measurements * Simulation and optimization approaches for humanoid robots * Biologically inspired control algorithms for bipedal walking * Generation and deformation of natural walking in computer graphics * Imitation of human motions on humanoids * Emotional body language during walking * Simulation of biologically inspired actuators for bipedal walking machines * Modeling and simulation techniques for the development of prostheses * Functional electrical stimulation of walking.

The creation and consumption of content, especially visual content, is ingrained into our modern world. This book contains a collection of texts centered on the evaluation of image retrieval systems. To enable reproducible evaluation we must create standardized benchmarks and evaluation methodologies. The individual chapters in this book highlight major issues and challenges in evaluating image retrieval systems and describe various initiatives that provide researchers with the necessary evaluation resources. In particular they describe activities within ImageCLEF, an initiative to evaluate cross-language image retrieval systems which has been running as part of the Cross Language Evaluation Forum (CLEF) since 2003.

To this end, the editors collected contributions from a range of people: those involved directly with ImageCLEF, such as the organizers of specific image retrieval or annotation tasks; participants who have developed techniques to tackle the challenges set forth by the organizers; and people from industry and academia involved with image retrieval and evaluation generally.

Mostly written for researchers in academia and industry, the book stresses the importance of combing textual and visual information - a multimodal approach - for effective retrieval. It provides the reader with clear ideas about information retrieval and its evaluation in contexts and domains such as healthcare, robot vision, press photography, and the Web.

Chemical processes in many fields of science and technology, including combustion, atmospheric chemistry, environmental modelling, process engineering, and systems biology, can be described by detailed reaction mechanisms consisting of numerous reaction steps. This book describes methods for the analysis of reaction mechanisms that are applicable in all these fields. Topics addressed include: how sensitivity and uncertainty analyses allow the calculation of the overall uncertainty of simulation results and the identification of the most important input parameters, the ways in which mechanisms can be reduced without losing important kinetic and dynamic detail, and the application of reduced models for more accurate engineering optimizations. This monograph is invaluable for researchers and engineers dealing with detailed reaction mechanisms, but is also useful for graduate students of related courses in chemistry, mechanical engineering, energy and environmental science and biology.

Provides an understanding of (mostly) enzymatic reactions that are responsible for the function and maintenance of living things This innovative text for non-biochemistry majors includes introductory material at the beginning of each chapter that contextualizes chapter themes in real-life scenarios Online supporting materials with further opportunities for research and investigation Synthesis questions at the end of each chapter that encourage students to make connections between concepts and ideas, as well as develop critical-thinking skills