This book gives a comprehensive overview on the various aspects of Trichoderma, a filamentous fungus ubiquitously present in soil. Topics addressed are the biology, diversity, taxonomy, ecology, biotechnology and cultivation of Trichoderma, to just name a few. Basic as well as applied aspects are covered and a special focus is given on use of Trichoderma in agriculture and beyond. Trichoderma species are widely distributed throughout the world in soil, rotting plant material, and wood. Although they are often considered as a contaminants, Trichoderma species are also known for their ability to act as biocontrol agents against various plant pathogens and plant diseases, and also as biostimulants promoting plant growth. The contents of this book will be of particular interest to, agricultural scientists, biotechnologists, plant pathologists, mycologists, and microbiologists, students, extension workers, policy makers and other stakeholders.

Published since 1959, "Advances in Applied Microbiology" continues to be one of the most widely read and authoritative review sources in microbiology.

The series contains comprehensive reviews of the most current research in applied microbiology. Recent areas covered include bacterial diversity in the human gut, protozoan grazing of freshwater biofilms, metals in yeast fermentation processes and the interpretation of host-pathogen dialogue through microarrays.

Eclectic volumes are supplemented by thematic volumes on various topics, including Archaea and sick building syndrome. Impact factor for 2012: 4.974.

Key features:

* Contributions from leading authorities * Informs and updates on all the latest developments in the field

This book reviews the assessment of industrial biotechnology products and processes from a sustainable perspective. Industrial Biotechnology is a comparably young field which comes along with high expectations with regard to sustainability issues. These stem from the promise of reducing greenhouse gas emissions and replacing fossil resources in the near or later future and using green technology, i.e. more environmentally friendly technologies. The intended economic, ecological and social benefits, however, need to be proven, resulting in a variety of challenges, both from a methodological and application point of view. In this book, specific assessment and application topics of industrial biotechnology are addressed, highlighting challenges and solutions for both developers and users of assessment methods. In twelve chapters, experts in their particular fields define the scope, characterize industrial biotechnology and show in their contributions the state of the art, challenges and prospects of assessing industrial biotechnology products and processes. The chapter 'Societal and Ethical Aspects of Industrial Biotechnology' of this book is available open access under a CC BY 4.0 license at link.springer.com

The application of biosensors is expanding in different areas. These are portable and convenient devices that permit the rapid, accurate, and reliable detection of analytes of interest present either in the atmosphere or in aqueous or in liquid phases. The detection of glucose levels in blood for the effective management of diabetes is one. Though different biosensors have been designed for an increasing number of applications, the kinetics of binding (and dissociation) of analytes by the receptors on the biosensor surfaces has not been given enough attention in the open literature. This is a very important area of investigation since it significantly impacts biosensor performance parameters such as stability, sensitivity, selectivity, response time, regenerability, etc. Binding and Dissociation Kinetics for Different Biosensor Applications Using Fractals addresses this critical need besides helping to correct or demonstrate the need to modify the present software available with commercial biosensors that determines the kinetics of analyte-receptor reactions on biosensor surfaces.
* first book to provide detailed kinetic analysis of the binding and dissociation reactions that are occuring on the biosensor surface
* addresses the area of analyte-receptor binding and dissociation kinetics occurring on biosensor surfaces
* provides physical insights into reactions occuring on biosensor surfaces

This book focuses on the application of nanotechnology in medicine and drug delivery, including diagnosis and therapy. Nanomedicine can contribute to the development of a personalized medicine both for diagnosis and therapy. By interacting with biological molecules at nanoscale level, nanotechnology opens up an immense field of research and applications. Interactions between artificial molecular assemblies or nanodevices and biomolecules can be understood both in the extracellular medium and inside human cells. Operating at nanoscale allows exploitation of physical properties different from those observed at microscale, such as the volume to surface area ratio. A number of clinical applications of nanobiotechnology, such as disease diagnosis, target-specific drug delivery, and molecular imaging are being investigated. Some promising new products are also undergoing clinical trials. Such advanced applications of this approach to biological systems will undoubtedly transform the foundations of diagnosis, treatment, and prevention of disease in the future. Nanomedicine sales reached $16 billion in 2015, with a minimum of $3.8 billion in nanotechnology R&D being invested each year. Global funding for emerging nanotechnology increased by 45% per year in recent years, with product sales exceeding $1 trillion in 2013. As the nanomedicine industry continues to grow, it is expected to have a significant impact on the global economy. This book provides clear, colorful and simple illustrations, tables, and case studies to clearly convey the content to a general audience and reader. This book also discusses the development of nanobiomaterials from biogenic (biological sources) systems for healthcare and disease therapies. This book, therefore, is useful for researchers and academicians in the fields of nanotechnology, medicine, nano-biotechnology and pharmacology.

This book provides essential insights into designing a localized DNA circuit to promote the rate of desired hybridization reactions over undesired leak reactions in the bulk solution. The area of dynamic DNA nanotechnology, or DNA circuits, holds great promise as a highly programmable toolbox that can be used in various applications, including molecular computing and biomolecular detection. However, a key bottleneck is the recurring issue of circuit leakage. The assembly of the localized circuit is dynamically driven by the recognition of biomolecules - a different approach from most methods, which are based on a static DNA origami assembly. The design guidelines for individual reaction modules presented here, which focus on minimizing circuit leakage, are established through NUPACK simulation and tested experimentally - which will be useful for researchers interested in adapting the concepts for other contexts. In the closing section, the design concepts are successfully applied to the biomolecular sensing of a broad range of targets including the single nucleotide mutations, proteins, and cell surface receptors.

Plant improvement has shifted its focus from yield, quality and disease resistance to factors that will enhance commerical export, such as early maturity, shelf life and better processing quality. Conventional plant breeding methods aiming at the improvement of a self-pollinating crop, such as wheat, usually take 10-12 years to develop and release of the new variety. During the past 10 years, significant advances have been made and accelerated methods have been developed for precision breeding and early release of crop varieties. This work summarizes concepts dealing with germplasm enhancement and development of improved varieties based on innovative methodologies that include doubled haploidy, marker assisted selection, marker assisted background selection, genetic mapping, genomic selection, high-throughput genotyping, high-throughput phenotyping, mutation breeding, reverse breeding, transgenic breeding, shuttle breeding, speed breeding, low cost high-throughput field phenotyping, etc. It is an important reference with special focus on accelerated development of improved crop varieties.

This updated second edition covers the molecular biology, genome engineering tools and comprehensive analysis techniques for Corynebacterium glutamicum. Aside from modern omics-based approaches, the authors also focus on cell physiology, including cell division, central carbon metabolic pathways, and the respiratory chain. Readers will learn how primary mechanisms like energy metabolism can be applied in processes like biorefinery. Newly added topics include cell envelope structures and aromatic compound metabolism in C. glutamicum. These chapters will be particularly useful for those interested in the microbial production of commodity chemicals, fuels, and proteins. Corynebacteriacea are already some of the most important industrial microorganisms. Understanding the cell physiology of C. glutamicum will help manufacturers to increase their product range and productivity through efficient metabolic engineering.

Agriculture faces many challenges to fulfil the growing demand for sustainable food production and ensure high-quality nutrition for a rapidly growing population. To guarantee adequate food production, it is necessary to increase the yield per area of arable land. A method for achieving this goal has been the application of growth regulators to modulate plant growth. Plant growth regulators (PGRs) are substances in specific formulations which, when applied to plants or seeds, have the capacity to promote, inhibit, or modify physiological traits, development and/or stress responses. They maintain proper balance between source and sink for enhancing crop yield. PGRs are used to maximize productivity and quality, improve consistency in production, and overcome genetic and abiotic limitations to plant productivity. Suitable PGRs include hormones such as cytokinins and auxins, and hormone-like compounds such as mepiquat chloride and paclobutrazol. The use of PGRs in mainstream agriculture has steadily increased within the last 20 years as their benefits have become better understood by growers. Unfortunately, the growth of the PGR market may be constrained by a lack of innovation at a time when an increase in demand for new products will require steady innovation and discovery of novel, cost-competitive, specific, and effective PGRs. A plant bio-stimulant is any substance or microorganism applied to plants with the aim to enhance nutrition efficiency, abiotic stress tolerance and/or crop quality traits, regardless of its nutrients content. Apart from traditional PGRs, which are mostly plant hormones, there are a number of substances/molecules such as nitric oxide, methyl jasmonate, brassinosteroids, seaweed extracts, strigolactones, plant growth promoting rhizobacteria etc. which act as PGRs. These novel PGRs or bio-stimulants have been reported to play important roles in stress responses and adaptation. They can protect plants against various stresses, including water deficit, chilling and high temperatures, salinity and flooding. This book includes chapters ranging from sensing and signalling in plants to translational research. In addition, the cross-talk operative in plants in response to varied signals of biotic and abiotic nature is also presented. Ultimately the objective of this book is to present the current scenario and the future plan of action for the management of stresses through traditional as well as novel PGRs. We believe that this book will initiate and introduce readers to state-of-the-art developments and trends in this field of study.

Environmental sustainability is one of the biggest issues faced by the mankind. Rapid & rampant industrialization has put great pressure on the natural resources. To make our planet a sustainable ecosystem, habitable for future generations & provide equal opportunity for all the living creatures we not only need to make corrections but also remediate the polluted natural resources. The low-input biotechnological techniques involving microbes and plants can provide the solution for resurrecting the ecosystems. Bioremediation and biodegradation can be used to improve the conditions of polluted soil and water bodies. Green energy involving biofuels have to replace the fossil fuels to combat pollution & global warming. Biological alternatives (bioinoculants) have to replace harmful chemicals for maintaining sustainability of agro-ecosystems. The book will cover the latest developments in environmental biotech so as to use in clearing and maintaining the ecosystems for sustainable future.

This book focuses on the state-of-the-art of biosensor research and development for specialists and non-specialists. It introduces the fundamentals of the subject with relevant characteristics of transducer elements, as well as biochemical recognition molecules. This book is ideal for researchers of nanotechnology, materials science and biophysics.

White biotechnology, or industrial biotechnology as it is also known, refers to the use of living cells and/or their enzymes to create industrial products that are more easily degradable, require less energy, create less waste during production and sometimes perform better than products created using traditional chemical processes. Over the last decade considerable progress has been made in white biotechnology research, and further major scientific and technological breakthroughs are expected in the future. Fungi are ubiquitous in nature and have been sorted out from different habitats, including extreme environments (high temperature, low temperature, salinity and pH), and may be associated with plants (epiphytic, endophytic and rhizospheric). The fungal strains are beneficial as well as harmful for human beings. The beneficial fungal strains may play important roles in the agricultural, industrial, and medical sectors. The fungal strains and their products (enzymes, bioactive compounds, and secondary metabolites) are very useful for industry (e.g., the discovery of penicillin from Penicillium chrysogenum). This discovery was a milestone in the development of white biotechnology as the industrial production of penicillin and antibiotics using fungi moved industrial biotechnology into the modern era, transforming it into a global industrial technology. Since then, white biotechnology has steadily developed and now plays a key role in several industrial sectors, providing both high value nutraceutical and pharmaceutical products. The fungal strains and bioactive compounds also play an important role in environmental cleaning. This volume covers the latest developments and research in white biotechnology with a focus on diversity and enzymes.

This book reviews the wide range of products and applications of solid state fermentation as well as the development of this cultivation technology over the last years. In this book, readers will also learn about the challenges of solid state fermentation, including process management, reactor design, scale-up and the formation of process-specific products. Solid fermentation is a traditional cultivation technique of food technology and involves all cultivations of microorganisms on a solid substrate without free liquid phase. In the course of development of Biotechnology it was replaced by liquid cultivation mainly in the western countries. Over the past few years, solid-state fermentation is now becoming more important and has moved more back into focus. Especially, it is suitable for the cultivation of filamentous organisms, like ascomycetes and basidiomycetes, but also for various yeasts and bacteria. The products and applications of solid-state fermentation are as diverse as the microorganisms. They range from enzyme production to the production of antibiotics and pigments to the use in environmental technology and energy production.

This book presents an authoritative and comprehensive overview of the production and use of microalgal biomass and bioproducts for energy generation. It also offers extensive information on engineering approaches to energy production, such as process integration and process intensification in harnessing energy from microalgae. Issues related to the environment, food, chemicals and energy supply pose serious threats to nations' success and stability. The challenge to provide for a rapidly growing global population has made it imperative to find new technological routes to increase the production of consumables while also bearing in mind the biosphere's ability to regenerate resources. Microbial biomass is a bioresource that provides effective solutions to these challenges. Divided into eight parts, the book explores microalgal production systems, life cycle assessment and the bio-economy of biofuels from microalgae, process integration and process intensification applied to microalgal biofuels production. In addition, it discusses the main fuel products obtained from microalgae, summarizing a range of useful energy products derived from algae-based systems, and outlines future developments. Given the book's breadth of coverage and extensive bibliography, it offers an essential resource for researchers and industry professionals working in renewable energy.

This thesis uses a systems-level approach to study the cellular metabolism, unveiling new mechanisms and responses that were impossible to reach with traditional reductionists procedures. The results reported here have a potential application in areas like metabolic engineering and disease treatment. They could also be used in determining the accuracy of the gene essentiality of new genome-scale reconstructions. Different methods and techniques, within the contexts of Systems Biology and the field known as Complex Networks Analysis have been applied in this work to show different features of the robustness of metabolic networks. The specific issues addressed here range from pure topological aspec ts of the networks themselves to the balance of biochemical fluxes.

This book gathers the latest findings on the microbial ecology of saline habitats, plant-microbe interactions under saline conditions, and saline soil reclamation for agricultural use. The content is divided into four main parts: Part I outlines the definition of salinity, its genesis and impacts, and microbial diversity in saline habitats. Part II deals with impact of salinity on microbial and plant life/health. Part III highlights plant - microbe interactions in saline environments, and Part IV describes strategies for mitigation and reclamation of saline soils. The salinization of arable land is steadily increasing in many parts of the world. An excessive concentration of soluble salts (salinity) in soils or irrigation water adversely affects plant growth and survival. This problem is exacerbated in arid and semiarid areas due to their low precipitation and high evaporation rates. In turn, poor management practices and policies for using river water for the irrigation of agriculture crops often lead to the secondary salinization of soils. Considering the growing demands of a constantly expanding population, understanding the microbial ecology and interactions under saline conditions and their implications for sustainable agriculture is of utmost importance. Providing both an essential review of the status quo and a future outlook, this book represents a valuable asset for researchers, environmentalists and students working in microbiology and agriculture. .

This thesis builds on recent innovations in multi-phase emulsion droplet design to demonstrate that emulsion morphologies enable a useful variety of dynamic optical phenomena. Despite the highly dynamic nature of fluid morphologies and their utility for stimuli-responsive, dynamic optical materials and devices, fluid matter is underrepresented in optical technology. Using bi-phase emulsion droplets as refractive micro-optical components, this thesis realizes micro-scale fluid compound lenses with optical properties that vary in response to changes in chemical concentrations, structured illumination, and thermal gradients. Theoretical considerations of emulsions as optical components are used to explain a previously unrecognized total internal reflection-enabled light interference phenomenon in emulsion droplets that results in rich structural coloration. While this work is focused on the fundamental optics of emulsion droplets, it also facilitates the use of light-emitting emulsion morphologies as chemo-optical transducers for early-stage food-borne pathogen detection. This thesis beautifully demonstrates the virtue of fundamental interdisciplinary exploration of unconventional material systems at the interface of optics, chemistry, and materials science, and the benefits arising from translation of the acquired knowledge into specific application scenarios.

This book addresses various aspects of the current castor bean research, including genetics, biotechnology, comparative genomics, and more specific topics such as oil metabolism and the ricin toxin. It also presents the whole genome sequencing of the castor bean and its impact on the mining of gene families and future plant breeding. Castor bean (Ricinus communis), an oilseed plant, belongs to the Euphorbiaceae (spurge) family. It is a tropical and subtropical crop valued for the high quality and uniform nature of its oil, which is mostly composed of the uncommon fatty acid ricinoleate. Castor bean oil has important industrial applications for the production of lubricants, cosmetics, medicines, and specialty chemicals, and castor bean has also been proposed as a biodiesel crop that does not pose concerns regarding the "food versus fuel" debate. However, it accumulates the type 2 ribosome-inactivating protein ricin in its seeds, and health concerns posed by ricin's high toxicity have prevented broader cultivation. Recently, there has been renewed interest in castor bean due to potential biosecurity issues.

This book reviews the development, characterization and applications of aptamers in different areas of biotechnology ranging from therapeutics to diagnostics and protein purification. Hailed as chemical antibodies, these single-stranded nucleic acid receptors were predicted to supersede antibodies in traditional assays, such as ELISA, within a short time. While this has yet to happen, readers will find in this book a deep insight into the progress of aptamer technology and a critical discussion about the limitations that need to be overcome in order to find wider acceptance and use outside of the still relatively small aptamer-community. This book covers all aspects of aptamer generation and application for the aptamer-experienced reader and curious novice alike, with the addition of an industry perspective on the future of aptamer-use in biotechnology.

This volume explores recent techniques for the computational inference of gene regulatory networks (GRNs). The chapters in this book cover topics such as methods to infer GRNs from time-varying data; the extraction of causal information from biological data; GRN inference from multiple heterogeneous data sets; non-parametric and hybrid statistical methods; the joint inference of differential networks; and mechanistic models of gene regulation dynamics. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, descriptions of recently developed methods for GRN inference, applications of these methods on real and/ or simulated biological data, and step-by-step tutorials on the usage of associated software tools. Cutting-edge and thorough, Gene Regulatory Networks: Methods and Protocols is an essential tool for evaluating the current research needed to further address the common challenges faced by specialists in this field.

This book reviews the latest biotechnological advances with pluripotent stem cells, exploring their application in tissue engineering and medicinal chemistry. Chapters from expert contributors cover topics such as the production of transgene-free induced pluripotent stem cells (iPSCs), expansion, controlled differentiation and programming of pluripotent stem cells, and their genetic instability. Particular attention is given to the application of the pluripotent stem cells for vascularision of engineered tissue and for drug screening. This book will appeal to researchers working in regenerative medicine and drug discovery, and to bioengineers and professionals interested in stem cell research.