This textbook teaches crucial statistical methods to answer research questions using a unique range of statistical software programs, including MINITAB and R. This textbook is developed for undergraduate students in agriculture, nursing, biology and biomedical research. Graduate students will also find it to be a useful way to refresh their statistics skills and to reference software options. The unique combination of examplesis approached using MINITAB and R for their individual strengths. Subjects covered include among others data description, probability distributions, experimental design, regression analysis, randomized design and biological assay. Unlike other biostatistics textbooks, this text also includes outliers, influential observations in regression and an introduction to survival analysis. Material is taken from the author's extensive teaching and research in Africa, USA and the UK. Sample problems, references and electronic supplementary material accompany each chapter."

The application and interpretation of statistics are central to ecological study and practice. Ecologists are now asking more sophisticated questions than in the past. These new questions, together with the continued growth of computing power and the availability of new software, have created a new generation of statistical techniques. These have resulted in major recent developments in both our understanding and practice of ecological statistics. This novel book synthesizes a number of these changes, addressing key approaches and issues that tend to be overlooked in other books such as missing/censored data, correlation structure of data, heterogeneous data, and complex causal relationships. These issues characterize a large proportion of ecological data, but most ecologists' training in traditional statistics simply does not provide them with adequate preparation to handle the associated challenges. Uniquely, Ecological Statistics highlights the underlying links among many statistical approaches that attempt to tackle these issues. In particular, it gives readers an introduction to approaches to inference, likelihoods, generalized linear (mixed) models, spatially or phylogenetically-structured data, and data synthesis, with a strong emphasis on conceptual understanding and subsequent application to data analysis. Written by a team of practicing ecologists, mathematical explanations have been kept to the minimum necessary. This user-friendly textbook will be suitable for graduate students, researchers, and practitioners in the fields of ecology, evolution, environmental studies, and computational biology who are interested in updating their statistical tool kits. A companion web site provides example data sets and commented code in the R language.

This book discusses questions of numerical solutions of applied problems on parallel computing systems. Nowadays, engineering and scientific computations are carried out on parallel computing systems, which provide parallel data processing on a few computing nodes. In the development of up-to-date applied software, this feature of computers must be taken into account for the maximum efficient usage of their resources. In constructing computational algorithms, we should separate relatively independent subproblems in order to solve them on a single computing node.

Effectively Access, Transform, Manipulate, Visualize, and Reason about Data and Computation Data Science in R: A Case Studies Approach to Computational Reasoning and Problem Solving illustrates the details involved in solving real computational problems encountered in data analysis. It reveals the dynamic and iterative process by which data analysts approach a problem and reason about different ways of implementing solutions. The book's collection of projects, comprehensive sample solutions, and follow-up exercises encompass practical topics pertaining to data processing, including: Non-standard, complex data formats, such as robot logs and email messages Text processing and regular expressions Newer technologies, such as Web scraping, Web services, Keyhole Markup Language (KML), and Google Earth Statistical methods, such as classification trees, k-nearest neighbors, and naive Bayes Visualization and exploratory data analysis Relational databases and Structured Query Language (SQL) Simulation Algorithm implementation Large data and efficiency Suitable for self-study or as supplementary reading in a statistical computing course, the book enables instructors to incorporate interesting problems into their courses so that students gain valuable experience and data science skills. Students learn how to acquire and work with unstructured or semistructured data as well as how to narrow down and carefully frame the questions of interest about the data. Blending computational details with statistical and data analysis concepts, this book provides readers with an understanding of how professional data scientists think about daily computational tasks. It will improve readers' computational reasoning of real-world data analyses.

Studies of evolution at the molecular level have experienced phenomenal growth in the last few decades, due to rapid accumulation of genetic sequence data, improved computer hardware and software, and the development of sophisticated analytical methods. The flood of genomic data has generated an acute need for powerful statistical methods and efficient computational algorithms to enable their effective analysis and interpretation. Molecular Evolution: a statistical approach presents and explains modern statistical methods and computational algorithms for the comparative analysis of genetic sequence data in the fields of molecular evolution, molecular phylogenetics, statistical phylogeography, and comparative genomics. Written by an expert in the field, the book emphasizes conceptual understanding rather than mathematical proofs. The text is enlivened with numerous examples of real data analysis and numerical calculations to illustrate the theory, in addition to the working problems at the end of each chapter. The coverage of maximum likelihood and Bayesian methods are in particular up-to-date, comprehensive, and authoritative. This advanced textbook is aimed at graduate level students and professional researchers (both empiricists and theoreticians) in the fields of bioinformatics and computational biology, statistical genomics, evolutionary biology, molecular systematics, and population genetics. It will also be of relevance and use to a wider audience of applied statisticians, mathematicians, and computer scientists working in computational biology.

Instead of presenting the standard theoretical treatments that underlie the various numerical methods used by scientists and engineers, Using R for Numerical Analysis in Science and Engineering shows how to use R and its add-on packages to obtain numerical solutions to the complex mathematical problems commonly faced by scientists and engineers. This practical guide to the capabilities of R demonstrates Monte Carlo, stochastic, deterministic, and other numerical methods through an abundance of worked examples and code, covering the solution of systems of linear algebraic equations and nonlinear equations as well as ordinary differential equations and partial differential equations. It not only shows how to use R's powerful graphic tools to construct the types of plots most useful in scientific and engineering work, but also: Explains how to statistically analyze and fit data to linear and nonlinear models Explores numerical differentiation, integration, and optimization Describes how to find eigenvalues and eigenfunctions Discusses interpolation and curve fitting Considers the analysis of time series Using R for Numerical Analysis in Science and Engineering provides a solid introduction to the most useful numerical methods for scientific and engineering data analysis using R.

Mathematical Models of Biological Systems provides a practical introduction to basic mathematical modelling methodology and analysis. It covers a variety of biological applications and uses these topics in turn to highlight key components in the art of modelling. Its primary aim is to give students the tools to translate simple, real-world biological problems into rigorous mathematical models. A secondary aim is to teach the reader how to critically assess the modelling components in the primary life science literature.
The book covers deterministic as well as stochastic dynamics, continuous-time as well as discrete-time dynamics, partial differential equations, dimensional analysis, and curve fitting/parameter estimation. It contains numerous case studies, graded from elementary examples to more complicated problems, as well as a general treatment of good modelling practice. Although the book assumes a basic background in mathematics, specifically beginning calculus and elementary statistics, all requisite material is included in a series of appendices.

Mathematical Models of Biological Systems provides a practical introduction to basic mathematical modelling methodology and analysis. It covers a variety of biological applications and uses these topics in turn to highlight key components in the art of modelling. Its primary aim is to give students the tools to translate simple, real-world biological problems into rigorous mathematical models. A secondary aim is to teach the reader how to critically assess the modelling components in the primary life science literature. The book covers deterministic as well as stochastic dynamics, continuous-time as well as discrete-time dynamics, partial differential equations, dimensional analysis, and curve fitting/parameter estimation. It contains numerous case studies, graded from elementary examples to more complicated problems, as well as a general treatment of good modelling practice. Although the book assumes a basic background in mathematics, specifically beginning calculus and elementary statistics, all requisite material is included in a series of appendices.

This open access book provides a wealth of hands-on examples that illustrate how hyperparameter tuning can be applied in practice and gives deep insights into the working mechanisms of machine learning (ML) and deep learning (DL) methods. The aim of the book is to equip readers with the ability to achieve better results with significantly less time, costs, effort and resources using the methods described here. The case studies presented in this book can be run on a regular desktop or notebook computer. No high-performance computing facilities are required. The idea for the book originated in a study conducted by Bartz & Bartz GmbH for the Federal Statistical Office of Germany (Destatis). Building on that study, the book is addressed to practitioners in industry as well as researchers, teachers and students in academia. The content focuses on the hyperparameter tuning of ML and DL algorithms, and is divided into two main parts: theory (Part I) and application (Part II). Essential topics covered include: a survey of important model parameters; four parameter tuning studies and one extensive global parameter tuning study; statistical analysis of the performance of ML and DL methods based on severity; and a new, consensus-ranking-based way to aggregate and analyze results from multiple algorithms. The book presents analyses of more than 30 hyperparameters from six relevant ML and DL methods, and provides source code so that users can reproduce the results. Accordingly, it serves as a handbook and textbook alike.

DESCRIPTION R is a powerful language for statistical computing and graphics that can handle virtually any data-crunching task. It runs on all important platforms and provides thousands of useful specialized modules and utilities. This makes R a great way to get meaningful information from mountains of raw data. R in Action, Second Edition is language tutorial focused on practical problems. Written by a research methodologist, it takes a direct and modular approach to quickly give readers the information they need to produce useful results. Focusing on realistic data analyses and a comprehensive integration of graphics, it follows the steps that real data analysts use to acquire their data, get it into shape, analyze it, and produce meaningful results that they can provide to clients. RETAIL SELLING POINTS Step-by-step guide to practical data analysis Gives quick access to the R language Written by seasoned researcher Uses over 130 graphics AUDIENCE This book is for social scientists, medical and pharmaceutical researchers, professors and students in quantitative fields, data analysts, data mining specialists, and statistical programmers who have a sense of what they want to do, but not how to do it in R. ABOUT THE TECHNOLOGY R is a powerful language for statistical computing and graphics that can handle virtually any data-crunching task. It runs on all important platforms and provides thousands of useful specialized modules and

This proceedings volume features top contributions in modern statistical methods from Statistics 2021 Canada, the 6th Annual Canadian Conference in Applied Statistics, held virtually on July 15-18, 2021. Papers are contributed from established and emerging scholars, covering cutting-edge and contemporary innovative techniques in statistics and data science. Major areas of contribution include Bayesian statistics; computational statistics; data science; semi-parametric regression; and stochastic methods in biology, crop science, ecology and engineering. It will be a valuable edited collection for graduate students, researchers, and practitioners in a wide array of applied statistical and data science methods.

The book presents the fundamental concepts from asymptotic statistical inference theory, elaborating on some basic large sample optimality properties of estimators and some test procedures. The most desirable property of consistency of an estimator and its large sample distribution, with suitable normalization, are discussed, the focus being on the consistent and asymptotically normal (CAN) estimators. It is shown that for the probability models belonging to an exponential family and a Cramer family, the maximum likelihood estimators of the indexing parameters are CAN. The book describes some large sample test procedures, in particular, the most frequently used likelihood ratio test procedure. Various applications of the likelihood ratio test procedure are addressed, when the underlying probability model is a multinomial distribution. These include tests for the goodness of fit and tests for contingency tables. The book also discusses a score test and Wald's test, their relationship with the likelihood ratio test and Karl Pearson's chi-square test. An important finding is that, while testing any hypothesis about the parameters of a multinomial distribution, a score test statistic and Karl Pearson's chi-square test statistic are identical. Numerous illustrative examples of differing difficulty level are incorporated to clarify the concepts. For better assimilation of the notions, various exercises are included in each chapter. Solutions to almost all the exercises are given in the last chapter, to motivate students towards solving these exercises and to enable digestion of the underlying concepts. The concepts from asymptotic inference are crucial in modern statistics, but are difficult to grasp in view of their abstract nature. To overcome this difficulty, keeping up with the recent trend of using R software for statistical computations, the book uses it extensively, for illustrating the concepts, verifying the properties of estimators and carrying out various test procedures. The last section of the chapters presents R codes to reveal and visually demonstrate the hidden aspects of different concepts and procedures. Augmenting the theory with R software is a novel and a unique feature of the book. The book is designed primarily to serve as a text book for a one semester introductory course in asymptotic statistical inference, in a post-graduate program, such as Statistics, Bio-statistics or Econometrics. It will also provide sufficient background information for studying inference in stochastic processes. The book will cater to the need of a concise but clear and student-friendly book introducing, conceptually and computationally, basics of asymptotic inference.

This textbook provides a step-by-step introduction to the tools and principles of high-dimensional statistics. Each chapter is complemented by numerous exercises, many of them with detailed solutions, and computer labs in R that convey valuable practical insights. The book covers the theory and practice of high-dimensional linear regression, graphical models, and inference, ensuring readers have a smooth start in the field. It also offers suggestions for further reading. Given its scope, the textbook is intended for beginning graduate and advanced undergraduate students in statistics, biostatistics, and bioinformatics, though it will be equally useful to a broader audience.

The richly illustrated Interactive Web-Based Data Visualization with R, plotly, and shiny focuses on the process of programming interactive web graphics for multidimensional data analysis. It is written for the data analyst who wants to leverage the capabilities of interactive web graphics without having to learn web programming. Through many R code examples, you will learn how to tap the extensive functionality of these tools to enhance the presentation and exploration of data. By mastering these concepts and tools, you will impress your colleagues with your ability to quickly generate more informative, engaging, and reproducible interactive graphics using free and open source software that you can share over email, export to pdf, and more. Key Features: Convert static ggplot2 graphics to an interactive web-based form Link, animate, and arrange multiple plots in standalone HTML from R Embed, modify, and respond to plotly graphics in a shiny app Learn best practices for visualizing continuous, discrete, and multivariate data Learn numerous ways to visualize geo-spatial data This book makes heavy use of plotly for graphical rendering, but you will also learn about other R packages that support different phases of a data science workflow, such as tidyr, dplyr, and tidyverse. Along the way, you will gain insight into best practices for visualization of high-dimensional data, statistical graphics, and graphical perception. The printed book is complemented by an interactive website where readers can view movies demonstrating the examples and interact with graphics.

This introductory textbook presents research methods and data analysis tools in non-technical language. It explains the research process and the basics of qualitative and quantitative data analysis, including procedures and methods, analysis, interpretation, and applications using hands-on data examples in QDA Miner Lite and IBM SPSS Statistics software. The book is divided into four parts that address study and research design; data collection, qualitative methods and surveys; statistical methods, including hypothesis testing, regression, cluster and factor analysis; and reporting. The intended audience is business and social science students learning scientific research methods, however, given its business context, the book will be equally useful for decision-makers in businesses and organizations.

This book presents a general method for deriving higher-order statistics of multivariate distributions with simple algorithms that allow for actual calculations. Multivariate nonlinear statistical models require the study of higher-order moments and cumulants. The main tool used for the definitions is the tensor derivative, leading to several useful expressions concerning Hermite polynomials, moments, cumulants, skewness, and kurtosis. A general test of multivariate skewness and kurtosis is obtained from this treatment. Exercises are provided for each chapter to help the readers understand the methods. Lastly, the book includes a comprehensive list of references, equipping readers to explore further on their own.

The book covers computational statistics, its methodologies and applications for IoT device. It includes the details in the areas of computational arithmetic and its influence on computational statistics, numerical algorithms in statistical application software, basics of computer systems, statistical techniques, linear algebra and its role in optimization techniques, evolution of optimization techniques, optimal utilization of computer resources, and statistical graphics role in data analysis. It also explores computational inferencing and computer model's role in design of experiments, Bayesian analysis, survival analysis and data mining in computational statistics.

The most crucial ability for machine learning and data science is mathematical logic for grasping their essence rather than relying on knowledge or experience. This textbook addresses the fundamentals of kernel methods for machine learning by considering relevant math problems and building Python programs. The book's main features are as follows: The content is written in an easy-to-follow and self-contained style. The book includes 100 exercises, which have been carefully selected and refined. As their solutions are provided in the main text, readers can solve all of the exercises by reading the book. The mathematical premises of kernels are proven and the correct conclusions are provided, helping readers to understand the nature of kernels. Source programs and running examples are presented to help readers acquire a deeper understanding of the mathematics used. Once readers have a basic understanding of the functional analysis topics covered in Chapter 2, the applications are discussed in the subsequent chapters. Here, no prior knowledge of mathematics is assumed. This book considers both the kernel for reproducing kernel Hilbert space (RKHS) and the kernel for the Gaussian process; a clear distinction is made between the two.

This new edition to the classic book by ggplot2 creator Hadley Wickham highlights compatibility with knitr and RStudio. ggplot2 is a data visualization package for R that helps users create data graphics, including those that are multi-layered, with ease. With ggplot2, it's easy to: produce handsome, publication-quality plots with automatic legends created from the plot specification superimpose multiple layers (points, lines, maps, tiles, box plots) from different data sources with automatically adjusted common scales add customizable smoothers that use powerful modeling capabilities of R, such as loess, linear models, generalized additive models, and robust regression save any ggplot2 plot (or part thereof) for later modification or reuse create custom themes that capture in-house or journal style requirements and that can easily be applied to multiple plots approach a graph from a visual perspective, thinking about how each component of the data is represented on the final plot This book will be useful to everyone who has struggled with displaying data in an informative and attractive way. Some basic knowledge of R is necessary (e.g., importing data into R). ggplot2 is a mini-language specifically tailored for producing graphics, and you'll learn everything you need in the book. After reading this book you'll be able to produce graphics customized precisely for your problems, and you'll find it easy to get graphics out of your head and on to the screen or page.

This monograph uses the Julia language to guide the reader through an exploration of the fundamental concepts of probability and statistics, all with a view of mastering machine learning, data science, and artificial intelligence. The text does not require any prior statistical knowledge and only assumes a basic understanding of programming and mathematical notation. It is accessible to practitioners and researchers in data science, machine learning, bio-statistics, finance, or engineering who may wish to solidify their knowledge of probability and statistics. The book progresses through ten independent chapters starting with an introduction of Julia, and moving through basic probability, distributions, statistical inference, regression analysis, machine learning methods, and the use of Monte Carlo simulation for dynamic stochastic models. Ultimately this text introduces the Julia programming language as a computational tool, uniquely addressing end-users rather than developers. It makes heavy use of over 200 code examples to illustrate dozens of key statistical concepts. The Julia code, written in a simple format with parameters that can be easily modified, is also available for download from the book's associated GitHub repository online. See what co-creators of the Julia language are saying about the book: Professor Alan Edelman, MIT: With "Statistics with Julia", Yoni and Hayden have written an easy to read, well organized, modern introduction to statistics. The code may be looked at, and understood on the static pages of a book, or even better, when running live on a computer. Everything you need is here in one nicely written self-contained reference. Dr. Viral Shah, CEO of Julia Computing: Yoni and Hayden provide a modern way to learn statistics with the Julia programming language. This book has been perfected through iteration over several semesters in the classroom. It prepares the reader with two complementary skills - statistical reasoning with hands on experience and working with large datasets through training in Julia.

This textbook presents the essential tools and core concepts of data science to public officials, policy analysts, and economists among others in order to further their application in the public sector. An expansion of the quantitative economics frameworks presented in policy and business schools, this book emphasizes the process of asking relevant questions to inform public policy. Its techniques and approaches emphasize data-driven practices, beginning with the basic programming paradigms that occupy the majority of an analyst's time and advancing to the practical applications of statistical learning and machine learning. The text considers two divergent, competing perspectives to support its applications, incorporating techniques from both causal inference and prediction. Additionally, the book includes open-sourced data as well as live code, written in R and presented in notebook form, which readers can use and modify to practice working with data.

This book provides a complete and comprehensive guide to Pyomo (Python Optimization Modeling Objects) for beginning and advanced modelers, including students at the undergraduate and graduate levels, academic researchers, and practitioners. Using many examples to illustrate the different techniques useful for formulating models, this text beautifully elucidates the breadth of modeling capabilities that are supported by Pyomo and its handling of complex real-world applications. In the third edition, much of the material has been reorganized, new examples have been added, and a new chapter has been added describing how modelers can improve the performance of their models. The authors have also modified their recommended method for importing Pyomo. A big change in this edition is the emphasis of concrete models, which provide fewer restrictions on the specification and use of Pyomo models. Pyomo is an open source software package for formulating and solving large-scale optimization problems. The software extends the modeling approach supported by modern AML (Algebraic Modeling Language) tools. Pyomo is a flexible, extensible, and portable AML that is embedded in Python, a full-featured scripting language. Python is a powerful and dynamic programming language that has a very clear, readable syntax and intuitive object orientation. Pyomo includes Python classes for defining sparse sets, parameters, and variables, which can be used to formulate algebraic expressions that define objectives and constraints. Moreover, Pyomo can be used from a command-line interface and within Python's interactive command environment, which makes it easy to create Pyomo models, apply a variety of optimizers, and examine solutions.

A new paradigm for scientific discovery through computational tools now permeates every aspect of astronomical research. Computational astrophysics combines modern computational methods, novel hardware designs, advanced algorithms, original software implementations, and associated technologies to discover new phenomena and to make predictions in astronomy. The proceedings of IAU Symposium 362 summarizes ongoing developments in computational astrophysics through astronomers in diverse fields sharing their knowledge and approaches. It focuses on computational methods applied to speed up and broaden the scope of scientific studies, such as finding trends in observational data, high performance computing, automated search algorithms, and model predictability. Experts discuss a palette of challenging informational and technical developments, with the goal of coordinating their efforts and the improvement of techniques in pursuit of a wide range of astronomical studies, including fluid dynamics in star and galaxy evolution, exoplanets, gravitational waves, numerical relativity, data mining, and much more.

An easy-to-understand course book, based on the authentic lectures and detailed research, conducted by the authors themselves, on information optics, holography and MATLAB. This book is the first to highlight the incoherent optical system, provide up-to-date, novel digital holography techniques, and demonstrate MATLAB codes to accomplish tasks such as optical image processing and pattern recognition. This title is a comprehensive introduction to the basics of Fourier optics as well as optical image processing and digital holography. A step-by-step guide which details the vast majority of the derivations, without omitting essential steps, to facilitate a clear mathematical understanding. This book also features exercises at the end of each chapter, providing hands-on experience and consolidating understanding. An ideal companion for graduates and researchers involved in engineering and applied physics, as well as interested in the growing field of information optics.

This book covers applications of R to the general discipline of radiation dosimetry and to the specific areas of luminescence dosimetry, luminescence dating, and radiation protection dosimetry. It features more than 90 detailed worked examples of R code fully integrated into the text, with extensive annotations. The book shows how researchers can use available R packages to analyze their experimental data, and how to extract the various parameters describing mathematically the luminescence signals. In each chapter, the theory behind the subject is summarized, and references are given from the literature, so that researchers can look up the details of the theory and the relevant experiments. Several chapters are dedicated to Monte Carlo methods, which are used to simulate the luminescence processes during the irradiation, heating, and optical stimulation of solids, for a wide variety of materials. This book will be useful to those who use the tools of luminescence dosimetry, including physicists, geologists, archaeologists, and for all researchers who use radiation in their research.