This book highlights key technologies and identifies areas for further development in proteogenomics. The utility and usefulness of very large Omics data sets (Next Gen Sequencing of DNA, RNA-seq, ribosome profiling, mass spectrometry- and antibody-based proteomics) is discussed and opportunities and challenges of related bioinformatics applications are outlined. The reader will be able to appreciate the interdisciplinary nature of the continuously evolving area of proteogenomics, which has already grown beyond its original concept of verifying gene annotations by proteomics. The chapters presented in this book are arranged to offer a general overview, rather than to provide detailed descriptions of technologies. The selected applications will provide useful insight into the level of detail that can be obtained in relation to certain diseases areas, including cancer biology and personalized medicine. The readers will find that each chapter delivers a comprehensive approach to proteogenomics, each from the point of view of a specific application. Research scientists interested in innovative processes that can offer a unique and at the same time a more complete access to technological developments and concepts that in turn can contribute to a better understand biological functions should read this book.

This book covers the latest developments in capillary electrophoresis-mass spectrometry for the analysis of therapeutic proteins. The application of capillary electrophoresis-mass spectrometry (CE-MS) coupling technology in the analysis of recombinant therapeutic proteins is detailed thoroughly. Specific topics include recent developments in coupling capillary electrophoresis with mass spectrometry for the quality control of monoclonal antibody therapeutics, top-down analysis of monoclonal antibody using the CE-MS platform, and detection of host cell protein impurities. Comprehensive characterization of antibody-drug conjugates (ADCs) by coupling capillary electrophoresis with mass spectrometry is also covered. This is an ideal book for scientists in the life science and biopharmaceutical industry who are working on characterizing the PTMs of monoclonal antibodies, as well as graduate students and researchers in the separation science and biological mass spectrometry fields.

This book describes important recent developments in fiber optic sensor technology and examines established and emerging applications in a broad range of fields and markets, including power engineering, chemical engineering, bioengineering, biomedical engineering, and environmental monitoring. Particular attention is devoted to niche applications where fiber optic sensors are or soon will be able to compete with conventional approaches. Beyond novel methods for the sensing of traditional parameters such as strain, temperature, and pressure, a variety of new ideas and concepts are proposed and explored. The significance of the advent of extended infrared sensors is discussed, and individual chapters focus on sensing at THz frequencies and optical sensing based on photonic crystal structures. Another important topic is the resonances generated when using thin films in conjunction with optical fibers, and the enormous potential of sensors based on lossy mode resonances, surface plasmon resonances, and long-range surface exciton polaritons. Detailed attention is also paid to fiber Bragg grating sensors and multimode interference sensors. Each chapter is written by an acknowledged expert in the subject under discussion.

The thesis presents experimental and theoretical results about the surface dynamics and the surface Dirac fermion (DF) spectral function of the strong topological insulators Bi2Te3 and Bi2Se3. The experimental results reveal the presence of a strong Kohn anomaly in the measured surface phonon dispersion of a low-lying optical mode, and the absence of surface Rayleigh acoustic phonons. Fitting the experimental data to theoretical models employing phonon Matsubara functions allowed the extraction of the matrix elements of the coupling Hamiltonian and the modifications to the surface phonon propagator that are encoded in the phonon self-energy. This allowed, for the first time, calculation of phonon mode-specific DF coupling (q) from experimental data, with average coupling significantly higher than typical values for metals, underscoring the strong coupling between optical surface phonons and surface DFs in topological insulators. Finally, to connect to experimental results obtained from photoemission spectroscopies, an electronic (DF) Matsubara function was constructed using the determined electron-phonon matrix elements and the optical phonon dispersion. This allowed calculation of the DF spectral function and density of states, allowing for comparison with photoemission and scanning tunneling spectroscopies. The results set the necessary energy resolution and extraction methodology for calculating from the DF perspective.

NMR DATA PROCESSING

Jeffrey C. Hoch and Alan S. Stern

Nuclear Magnetic Resonance (NMR) spectroscopy is a powerful nondestructive technique for exploring the structure of matter. In recent years, NMR instrumentation has become increasingly sophisticated, and the software used to acquire and process NMR data continues to expand in scope and complexity. This software has always been difficult to understand, and, until now, it seemed likely to remain that way.

NMR Data Processing examines and explains the techniques used to process, present, and analyze NMR data. It provides a complete account of the fundamentals of spectrum analysis and establishes a framework for applying those fundamentals to real NMR data. It also details, in clear and concise language, the basic principles underlying the complex software needed to analyze the data.

Two chapters are devoted to the fundamentals and applications of discrete Fourier transform (DFT) in NMR, which was crucial to the development of modern NMR spectroscopy. A large part of the book focuses on increasingly important non-DFT methods, which obtain higher sensitivity and resolution. Other topics covered include:

• Data formats
• Processing for multidimensional experiments
• Parametric modeling of NMR signals
• Standard techniques—apodization, zero-filling, the Hilbert transform
• Artifacts—aliasing, leakage, solvent signals
• Advanced processing techniques—LP, MaxEnt, Bayesian analysis

Jeffrey C. Hoch and Alan S. Stern conclude their in-depth look at this rapidly growing field by exploring methods for analyzing processed data, including visualization, quantification, and error analysis. Readers are provided with a solid foundation for developing new methods of their own.

NMR Data Processing is an important tool for students learning basic principles for the first time, technicians troubleshooting data processing problems, and professional researchers developing new techniques. It will help all NMR users acquire a true grasp of the methods behind the process, avoid the pitfalls of misapplication and misinterpretation, and exploit the full power of NMR software.

This thesis focuses on nonlinear spectroscopy from a quantum optics perspective. First, it provides a detailed introduction to nonlinear optical signals; starting from Glauber's photon counting formalism, it establishes the diagrammatic formulation, which forms the backbone of nonlinear molecular spectroscopy. The main body of the thesis investigates the impact of quantum correlations in entangled photon states on two-photon transitions, with a particular focus on the time-energy uncertainty, which restricts the possible simultaneous time and frequency resolution in measurements. It found that this can be violated with entangled light for individual transitions. The thesis then presents simulations of possible experimental setups that could exploit this quantum advantage. The final chapter is devoted to an application of the rapidly growing field of multidimensional spectroscopy to trapped ion chains, where it is employed to investigate nonequilibrium properties in quantum simulations.

This book is a comprehensive, theoretical, practical, and thorough guide to XAFS spectroscopy. The book addresses XAFS fundamentals such as experiments, theory and data analysis, advanced XAFS methods such as operando XAFS, time-resolved XAFS, spatially resolved XAFS, total-reflection XAFS, high energy resolution XAFS, and practical applications to a variety of catalysts, nanomaterials and surfaces. This book is accessible to a broad audience in academia and industry, and will be a useful guide for researchers entering the subject and graduate students in a wide variety of disciplines.

This book provides an introduction to fundamental concepts of solid mechanics for the uninitiated. It also includes a concise review of fundamentals for those who have been away from the field for a time or are studying for a final exam or engineering license exam. The coverage ranges from fundamental definitions through constitutive equations, axial loading, torsion, bending, thermal effects, stability, pressure vessels, plates and shells, computational mechanics, and fibrous composite materials.

This book covers the main ideas, methods, recent developments and applications of quantum-limit optical spectroscopy to quantum information, resolution spectroscopy, measurements beyond quantum limits, measurement of decoherence and entanglement. Quantum-limit spectroscopy lies at the frontier of current experimental and theoretical techniques, and is one of the areas of atomic spectroscopy where the quantization of the field is essential to predict and interpret the existing experimental results. Currently, there is an increasing interest in quantum and precision spectroscopy both theoretically and experimentally, due to a significant progress in trapping and cooling of single atoms and ions. This progress allows to explore in the most intimate detail the ways in which light interacts with atoms and to measure spectral properties and quantum effects with a large precision. Moreover, it allows to perform subtle tests of quantum mechanics on the single atom and single photon scale which were hardly even imaginable as ``thought experiments'' a few years ago.

This book review series presents current trends in modern biotechnology. The aim is to cover all aspects of this interdisciplinary technology where knowledge, methods and expertise are required from chemistry, biochemistry, microbiology, genetics, chemical engineering and computer science. Volumes are organized topically and provide a comprehensive discussion of developments in the respective field over the past 3-5 years. The series also discusses new discoveries and applications. Special volumes are dedicated to selected topics which focus on new biotechnological products and new processes for their synthesis and purification. In general, special volumes are edited by well-known guest editors. The series editor and publisher will however always be pleased to receive suggestions and supplementary information. Manuscripts are accepted in English.

This book offers a comprehensive introduction to confocal microscopy - with a particular focus on spectral confocal microscopy. Beginning with an introduction to optical lenses, it provides a guide to compound microscopes and explains related topics like microscopic resolution. It then presents an outline of fluorescence and its corresponding implications for microscopy. The following excursus on the confocal beam paths includes implementation of acousto-optical devices and modern sensor techniques. Complex relationships are explained in a comprehensible manner, supported by many graphical figures. Discussing the principles of magnifying optics and the technical fundamentals and modes of operation of modern laser scanning microscopes, it is a valuable resource for student and lab technicians as well as faculty members.

This book suggests a new common approach to the study of resonance energy transport based on the recently developed concept of Limiting Phase Trajectories (LPTs), presenting applications of the approach to significant nonlinear problems from different fields of physics and mechanics. In order to highlight the novelty and perspectives of the developed approach, it places the LPT concept in the context of dynamical phenomena related to the energy transfer problems and applies the theory to numerous problems of practical importance. This approach leads to the conclusion that strongly nonstationary resonance processes in nonlinear oscillator arrays and nanostructures are characterized either by maximum possible energy exchange between the clusters of oscillators (coherence domains) or by maximum energy transfer from an external source of energy to the chain. The trajectories corresponding to these processes are referred to as LPTs. The development and the use of the LPTs concept a re motivated by the fact that non-stationary processes in a broad variety of finite-dimensional physical models are beyond the well-known paradigm of nonlinear normal modes (NNMs), which is fully justified either for stationary processes or for nonstationary non-resonance processes described exactly or approximately by the combinations of the non-resonant normal modes. Thus, the role of LPTs in understanding and analyzing of intense resonance energy transfer is similar to the role of NNMs for the stationary processes. The book is a valuable resource for engineers needing to deal effectively with the problems arising in the fields of mechanical and physical applications, when the natural physical model is quite complicated. At the same time, the mathematical analysis means that it is of interest to researchers working on the theory and numerical investigation of nonlinear oscillations.

This book addresses the piezoresistance in p-type 3C-SiC, which it investigates using experimental characterization and theoretical analysis. The gauge factor, the piezoresistive coefficients in two-terminal and four-terminal resistors, the comparison between single crystalline and nanocrystalline SiC, along with the temperature dependence of the piezoresistive effect in p-type 3C-SiC are also discussed. Silicon carbide (SiC) is an excellent material for electronic devices operating at high temperatures, thanks to its large energy band gap, superior mechanical properties and extreme chemical inertness. Among the numerous polytypes of SiC, the cubic single crystal, which is also well known as 3C-SiC, is the most promising platform for microelectromechanical (MEMS) applications, as it can be epitaxially grown on an Si substrate with diameters of up to several hundred millimeters. This feature makes 3C-SiC compatible with the conventional Si-based micro/nano processing and also cuts down the cost of SiC wafers. The investigation into the piezoresistive effect in 3C-SiC is of significant interest for the development of mechanical transducers such as pressure sensors and strain sensors used for controlling combustion and deep well drilling. Although a number of studies have focused on the piezoresistive effect in n-type 3C-SiC, 4H-SiC and 6H-SiC, comparatively little attention has been paid to piezoresistance in p-type 3C-SiC. In addition, the book investigates the piezoresistive effect of top-down fabricated SiC nanowires, revealing a high degree of sensitivity in nanowires employing an innovative nano strain-amplifier. The large gauge factors of the p-type 3C-SiC at both room temperature and high temperatures found here indicate that this polytype could be suitable for the development of mechanical sensing devices operating in harsh environments with high temperatures.

This thesis presents the first direct observations of the 3D-shape, size and electrical properties of nanoscale filaments, made possible by a new Scanning Probe Microscopy-based tomography technique referred to as scalpel SPM. Using this innovative technology and nm-scale observations, the author achieves essential insights into the filament formation mechanisms, improves the understanding required for device optimization, and experimentally observes phenomena that had previously been only theoretically proposed.

This thesis presents a method for reliably and robustly producing samples of amyloid- (A ) by capturing them at various stages of aggregation, as well as the results of subsequent imaging with various atomic force microscopy (AFM) methods, all of which add value to the data gathered by collecting information on the peptide's nanomechanical, elastic, thermal or spectroscopical properties. Amyloid- (A ) undergoes a hierarchy of aggregation following a structural transition, making it an ideal subject of study using scanning probe microscopy (SPM), dynamic light scattering (DLS) and other physical techniques. By imaging samples of A with Ultrasonic Force Microscopy, a detailed substructure to the morphology is revealed, which correlates well with the most advanced cryo-EM work. Early stage work in the area of thermal and spectroscopical AFM is also presented, and indicates the promise these techniques may hold for imaging sensitive and complex biological materials. This thesis demonstrates that physical techniques can be highly complementary when studying the aggregation of amyloid peptides, and allow the detection of subtle differences in their aggregation processes.

The work presented in this thesis established the existence of wobbling at low spin and low deformation in the Z~60, N~76 nuclear region. This opens the region to further searches for wobbling and shows that wobbling is not confined to a particular quasiparticle orbital, spin or deformation. While deformed nuclei usually have axial shape, triaxial shapes have been predicted at low to moderate spins in certain regions of the nuclear chart (e.g. Z~60, N~76 and Z~46, N~66). Observation of one of the fingerprints of triaxiality, chirality and wobbling, guarantees that the nucleus is axially asymmetric. While chirality has been observed in numerous nuclei from many regions of the nuclear chart, wobbling, prior to this work, had only been observed at high spins in super deformed bands in five nuclei confined to the Z~70, N~90 region. Additionally, this dissertation establishes a new interpretation for the wobbling phenomenon. It shows for the first time that the nucleon aligns to the short axis, which explains the decrease in wobbling energies with angular momentum seen on this and all previous wobbling nuclei while still explaining the observed B(E2out)B(E2in) ratios. This is a new phenomenon, which is in contrast to the increase of the wobbling energies predicted by Bohr and Mottelson.

This thesis presents the development of theranostic gold nanostars (GNS) for multimodality cancer imaging and therapy. Furthermore, it demonstrates that a novel two-pronged treatment, combining immune-checkpoint inhibition and GNS-mediated photothermal nanotherapy, can not only eradicate primary treated tumors but also trigger immune responses to treat distant untreated tumors in a mouse animal model. Cancer has become a significant threat to human health with more than eight million deaths each year, and novel methods for cancer management to improve patients' overall survival are urgently needed. The developed multifunctional GNS nanoprobe with tip-enhanced plasmonics in the near-infrared region can be combined with (1) surface-enhanced Raman spectroscopy (SERS), (2) two-photon photoluminescence (TPL), (3) X-ray computed tomography (CT), (4) magnetic resonance imaging (MRI), (5) positron emission tomography (PET), and (6) photothermal therapy (PTT) for cancer imaging and treatment. The ability of the GNS nanoprobe to detect submillimeter intracranial brain tumors was demonstrated using PET scan - a superior non-invasive imaging modality - in a mouse animal model. In addition, delayed rechallenge with repeated cancer cell injection in cured mice did not lead to new tumor formation, indicating generation of a memorized immune response to cancer. The biocompatible gold nanostars with superior capabilities for cancer imaging and treatment have great potential for translational medicine applications.

This book explores the conversion for solar energy into renewable liquid fuels through electrochemical reactions. The first section of the book is devoted to the theoretical fundamentals of solar fuels production, focusing on the surface properties of semiconductor materials in contact with aqueous solutions and the reaction mechanisms. The second section describes a collection of current, relevant characterization techniques, which provide essential information of the band structure of the semiconductors and carrier dynamics at the interface semiconductor. The third, and last section comprises the most recent developments in materials and engineered structures to optimize the performance of solar-to-fuel conversion devices.

In this thesis, the ionization of atoms and small molecules in strong laser fields is experimentally studied using a reaction microscope. The population of autoionizing doubly excited states in the laser fields is proven and a possible connection to the well-known dielectronic recombination processes is discussed. The fundamental process of tunnel ionization in strong laser fields is subject of investigation in a pump-probe experiment with ultrashort laser pulses. A coherent superposition of electronic states in singly charged argon ions is created within the first, and subsequently tunnel-ionized with the second pulse. This gives access to state-selective information about the tunneling process and allows to test common models. Moreover, the ionization of krypton and argon at different wavelengths is studied, from the multiphoton to the tunneling regime. The wavelength-dependent investigations are furthermore extended to molecular hydrogen. In addition to ionization, this system might undergo different dissociative processes. Channel-selective electron momentum distributions are presented and compared to each other.

The series Advances in Polymer Science presents critical reviews of the present and future trends in polymer and biopolymer science. It covers all areas of research in polymer and biopolymer science including chemistry, physical chemistry, physics, material science. The thematic volumes are addressed to scientists, whether at universities or in industry, who wish to keep abreast of the important advances in the covered topics. Advances in Polymer Science enjoys a longstanding tradition and good reputation in its community. Each volume is dedicated to a current topic, and each review critically surveys one aspect of that topic, to place it within the context of the volume. The volumes typically summarize the significant developments of the last 5 to 10 years and discuss them critically, presenting selected examples, explaining and illustrating the important principles, and bringing together many important references of primary literature. On that basis, future research directions in the area can be discussed. Advances in Polymer Science volumes thus are important references for every polymer scientist, as well as for other scientists interested in polymer science - as an introduction to a neighboring field, or as a compilation of detailed information for the specialist. Review articles for the individual volumes are invited by the volume editors. Single contributions can be specially commissioned. Readership: Polymer scientists, or scientists in related fields interested in polymer and biopolymer science, at universities or in industry, graduate students

This book focuses on the most recent, relevant, comprehensive and significant aspects in the well-established multidisciplinary field Laboratory Astrophysics. It focuses on astrophysical environments, which include asteroids, comets, the interstellar medium, and circumstellar and circumplanetary regions. Its scope lies between physics and chemistry, since it explores physical properties of the gas, ice, and dust present in those systems, as well as chemical reactions occurring in the gas phase, the bare dust surface, or in the ice bulk and its surface. Each chapter provides the necessary mathematical background to understand the subject, followed by a case study of the corresponding system. The book provides adequate material to help interpret the observations, or the computer models of astrophysical environments. It introduces and describes the use of spectroscopic tools for laboratory astrophysics. This book is mainly addressed to PhD graduates working in this field or observers and modelers searching for information on ice and dust processes.

This Brief documents the life, discoveries and inventions of the chemist Carl Auer von Welsbach. Particular attention is given to his pioneering work on the rare earth elements, including the discovery of four new elements, which allowed him to develop new materials, to invent new useful devices and to establish major industries. From the invention of the incandescent gas mantle and first electric incandescent lamps with metal filaments to the first mass production of radium from pitchblende residues, readers will learn the story of his notable legacy to the word through the lens of his rare earths knowledge.

This book gives an overview of recent developments in RS and SERS for sensing and biosensing considering also limitations, possibilities and prospects of this technique. Raman scattering (RS) is a widely used vibrational technique providing highly specific molecular spectral patterns. A severe limitation for the application of this spectroscopic technique lies in the low cross section of RS. Surface-enhanced Raman scattering (SERS) spectroscopy overcomes this problem by 6-11 orders of magnitude enhancement compared with the standard RS for molecules in the close vicinity of certain rough metal surfaces. Thus, SERS combines molecular fingerprint specificity with potential single-molecule sensitivity. Due to the recent development of new SERS-active substrates, labeling and derivatization chemistry as well as new instrumentations, SERS became a very promising tool for many varied applications, including bioanalytical studies and sensing. Both intrinsic and extrinsic SERS biosensing schemes have been employed to detect and identify small molecules, nucleic acids and proteins, and also for cellular and in vivo sensing.

This book of Springer Proceedings in Geoarchaeology and Archaeological Mineralogy contains selected papers presented at the 7th Geoarchaeology Conference, which took place during October 19-23, 2020, at the South Urals Federal Research Center, Ural Branch of Russian Academy of Sciences, Miass, Russia. The Proceedings combine studies in archeometry, geoarchaeology, and ancient North Eurasian technologies, including paleometallurgy, stone tools investigation, past exploitation of geological resources, bioarchaeology, residue analysis, pottery, and lithics studies. This book also specializes in various non-organic materials, rocks, minerals, ores, and metals, especially copper and metallurgical slags. Many types of research also use modern analytical methods of isotopic, chemical, and mineralogical analysis to address the composition and structure of ancient materials and the technological practices of past human populations of modern Russia, Ukraine, Turkmenistan, Tajikistan, and Mongolia. This book is intended for archaeologists, historians, museum workers, and geologists, as well as students, researchers from other disciplines, and the general public interested in the interdisciplinary research in the field of archaeology and archaeological materials, strategies and techniques of past quarrying, mining, metallurgy and lithic technologies at different chronological periods in Eurasian steppe and adjacent forest zone.

Scanning and stationary-beam electron microscopes are indispensable tools for both research and routine evaluation in materials science, the semiconductor industry, nanotechnology and the biological, forensic, and medical sciences. This book introduces current theory and practice of electron microscopy, primarily for undergraduates who need to understand how the principles of physics apply in an area of technology that has contributed greatly to our understanding of life processes and "inner space." Physical Principles of Electron Microscopy will appeal to technologists who use electron microscopes and to graduate students, university teachers and researchers who need a concise reference on the basic principles of microscopy.