In July 2009, many experts in the mathematical modeling of biological sciences gathered in Les Houches for a 4-week summer school on the mechanics and physics of biological systems. The goal of the school was to present to students and researchers an integrated view of new trends and challenges in physical and mathematical aspects of biomechanics. While the scope for such a topic is very wide, they focused on problems where solid and fluid mechanics play a central role. The school covered both the general mathematical theory of mechanical biology in the context of continuum mechanics but also the specific modeling of particular systems in the biology of the cell, plants, microbes, and in physiology.
These lecture notes are organized (as was the school) around five different main topics all connected by the common theme of continuum modeling for biological systems: Bio-fluidics, Bio-gels, Bio-mechanics, Bio-membranes, and Morphogenesis. These notes are not meant as a journal review of the topic but rather as a gentle tutorial introduction to the readers who want to understand the basic problematic in modeling biological systems from a mechanics perspective.

Thirty years' teaching experience have been condensed into this concise introductory book on Statistical Mechanics. Ideal for second and third year undergraduates in physics, applied mathematics, physical chemistry, chemical engineering, metallurgy, materials science and polymer science.
Provides a concise introduction to statistical mechanicsIdeal for second and third year undergraduates in physics, applied mathematics, physical chemistry, chemical engineering, metallurgy, materials science and polymer science

This text provides a uniform and consistent approach to diversified problems encountered in the study of dynamical processes in condensed phase molecular systems. Given the broad interdisciplinary aspect of this subject, the book focuses on three themes: coverage of needed background material, in-depth introduction of methodologies, and analysis of several key applications. The uniform approach and common language used in all discussions help to develop general understanding and insight on condensed phases chemical dynamics. The applications discussed are among the most fundamental processes that underlie physical, chemical and biological phenomena in complex systems.
The first part of the book starts with a general review of basic mathematical and physical methods (Chapter 1) and a few introductory chapters on quantum dynamics (Chapter 2), interaction of radiation and matter (Chapter 3) and basic properties of solids (chapter 4) and liquids (Chapter 5). In the second part the text embarks on a broad coverage of the main methodological approaches. The central role of classical and quantum time correlation functions is emphasized in Chapter 6. The presentation of dynamical phenomena in complex systems as stochastic processes is discussed in Chapters 7 and 8. The basic theory of quantum relaxation phenomena is developed in Chapter 9, and carried on in Chapter 10 which introduces the density operator, its quantum evolution in Liouville space, and the concept of reduced equation of motions. The methodological part concludes with a discussion of linear response theory in Chapter 11, and of the spin-boson model in chapter 12. The third part of the book applies the methodologies introducedearlier to several fundamental processes that underlie much of the dynamical behaviour of condensed phase molecular systems. Vibrational relaxation and vibrational energy transfer (Chapter 13), Barrier crossing and diffusion controlled reactions (Chapter 14), solvation dynamics (Chapter 15), electron transfer in bulk solvents (Chapter 16) and at electrodes/electrolyte and metal/molecule/metal junctions (Chapter 17), and several processes pertaining to molecular spectroscopy in condensed phases (Chapter 18) are the main subjects discussed in this part.

This book presents the SPH method (Smoothed-Particle Hydrodynamics) for fluid modelling from a theoretical and applied viewpoint. It comprises two parts that refer to each other. The first one, dealing with the fundamentals of Hydraulics, is based on the elementary principles of Lagrangian and Hamiltonian Mechanics. The specific laws governing a system of macroscopic particles are built, before large systems involving dissipative processes are explained. The continua are discussed, and a fairly exhaustive account of turbulence is given. The second part discloses the bases of the SPH Lagrangian numerical method from the continuous equations, as well as from discrete variational principles, setting out the method's specific properties of conservativity and invariance. Various numerical schemes are compared, permanently referring to the physics as dealt with in the first part. Applications to schematic instances are discussed, and, ultimately, practical applications to the dimensioning of coastal and fluvial structures are considered.
Despite the rapid growth in the SPH field, this book is the first to present the method in a comprehensive way for fluids. It should serve as a rigorous introduction to SPH and a reference for fundamental mathematical fluid dynamics. This book is intended for scientists, doctoral students, teachers, and engineers, who want to enjoy a rather unified approach to the theoretical bases of Hydraulics or who want to improve their skills using the SPH method. It will inspire the reader with a feeling of unity, answering many questions without any detrimental formalism.

This hands-on guide is primarily intended to be used in undergraduate laboratories in the physical sciences and engineering. It assumes no prior knowledge of statistics. It introduces the necessary concepts where needed, with key points illustrated with worked examples and graphic illustrations. In contrast to traditional mathematical treatments it uses a combination of spreadsheet and calculus-based approaches, suitable as a quick and easy on-the-spot reference. The emphasis throughout is on practical strategies to be adopted in the laboratory.
Error analysis is introduced at a level accessible to school leavers, and carried through to research level. Error calculation and propagation is presented though a series of rules-of-thumb, look-up tables and approaches amenable to computer analysis. The general approach uses the chi-square statistic extensively. Particular attention is given to hypothesis testing and extraction of parameters and their uncertainties by fitting mathematical models to experimental data. Routines implemented by most contemporary data analysis packages are analysed and explained. The book finishes with a discussion of advanced fitting strategies and an introduction to Bayesian analysis.

Nonlinear Time Series Analysis with R provides a practical guide to emerging empirical techniques allowing practitioners to diagnose whether highly fluctuating and random appearing data are most likely driven by random or deterministic dynamic forces. It joins the chorus of voices recommending 'getting to know your data' as an essential preliminary evidentiary step in modelling. Time series are often highly fluctuating with a random appearance. Observed volatility is commonly attributed to exogenous random shocks to stable real-world systems. However, breakthroughs in nonlinear dynamics raise another possibility: highly complex dynamics can emerge endogenously from astoundingly parsimonious deterministic nonlinear models. Nonlinear Time Series Analysis (NLTS) is a collection of empirical tools designed to aid practitioners detect whether stochastic or deterministic dynamics most likely drive observed complexity. Practitioners become 'data detectives' accumulating hard empirical evidence supporting their modelling approach. This book is targeted to professionals and graduate students in engineering and the biophysical and social sciences. Its major objectives are to help non-mathematicians - with limited knowledge of nonlinear dynamics - to become operational in NLTS; and in this way to pave the way for NLTS to be adopted in the conventional empirical toolbox and core coursework of the targeted disciplines. Consistent with modern trends in university instruction, the book makes readers active learners with hands-on computer experiments in R code directing them through NLTS methods and helping them understand the underlying logic (please see www.marco.bittelli.com). The computer code is explained in detail so that readers can adjust it for use in their own work. The book also provides readers with an explicit framework - condensed from sound empirical practices recommended in the literature - that details a step-by-step procedure for applying NLTS in real-world data diagnostics.

This book contains an extensive illustration of use of finite difference method in solving the boundary value problem numerically. A wide class of differential equations has been numerically solved in this book. Starting with differential equations of elementary functions like hyperbolic, sine and cosine, we have solved those of special functions like Hermite, Laguerre and Legendre. Those of Airy function, of stationary localised wavepacket, of the quantum mechanical problem of a particle in a 1D box, and the polar equation of motion under gravitational interaction have also been solved. Mathematica 6.0 has been used to solve the system of linear equations that we encountered and to plot the numerical data. Comparison with known analytic solutions showed nearly perfect agreement in every case. On reading this book, readers will become adept in using the method.

Integrable models have a fascinating history with many important discoveries that dates back to the famous Kepler problem of planetary motion. Nowadays it is well recognised that integrable systems play a ubiquitous role in many research areas ranging from quantum field theory, string theory, solvable models of statistical mechanics, black hole physics, quantum chaos and the AdS/CFT correspondence, to pure mathematics, such as representation theory, harmonic analysis, random matrix theory and complex geometry. Starting with the Liouville theorem and finite-dimensional integrable models, this book covers the basic concepts of integrability including elements of the modern geometric approach based on Poisson reduction, classical and quantum factorised scattering and various incarnations of the Bethe Ansatz. Applications of integrability methods are illustrated in vast detail on the concrete examples of the Calogero-Moser-Sutherland and Ruijsenaars-Schneider models, the Heisenberg spin chain and the one-dimensional Bose gas interacting via a delta-function potential. This book has intermediate and advanced topics with details to make them clearly comprehensible.

Science often deals with hard-to-see phenomena, and they only stand out and become real when viewed through the lens of complex statistical tools. This book is not a textbook about statistics applied to science - there are already many excellent books to choose from - rather, it tries to give an overview of the basic principles that physical scientists use to analyze their data and bring out the order of Nature from the fog of background noise.

This book is a course in methods and models rooted in physics and used in modelling economic and social phenomena. It covers the discipline of econophysics, which creates an interface between physics and economics. Besides the main theme, it touches on the theory of complex networks and simulations of social phenomena in general.
After a brief historical introduction, the book starts with a list of basic empirical data and proceeds to thorough investigation of mathematical and computer models. Many of the models are based on hypotheses of the behaviour of simplified agents. These comprise strategic thinking, imitation, herding, and the gem of econophysics, the so-called minority game. At the same time, many other models view the economic processes as interactions of inanimate particles. Here, the methods of physics are especially useful. Examples of systems modelled in such a way include books of stock-market orders, and redistribution of wealth among individuals. Network effects are investigated in the interaction of economic agents. The book also describes how to model phenomena like cooperation and emergence of consensus.
The book will be of benefit to graduate students and researchers in both Physics and Economics.

This volume shares and makes accessible new research lines and recent results in several branches of theoretical and mathematical physics, among them Quantum Optics, Coherent States, Integrable Systems, SUSY Quantum Mechanics, and Mathematical Methods in Physics. In addition to a selection of the contributions presented at the "6th International Workshop on New Challenges in Quantum Mechanics: Integrability and Supersymmetry", held in Valladolid, Spain, 27-30 June 2017, several high quality contributions from other authors are also included. The conference gathered 60 participants from many countries working in different fields of Theoretical Physics, and was dedicated to Prof. Veronique Hussin-an internationally recognized expert in many branches of Mathematical Physics who has been making remarkable contributions to this field since the 1980s. The reader will find interesting reviews on the main topics from internationally recognized experts in each field, as well as other original contributions, all of which deal with recent applications or discoveries in the aforementioned areas.

The aim of this book is to present Classical Thermodynamics in a unified way, from the most fundamental principles to non-uniform systems, thereby requiring the introduction of coarse graining methods, leading for instance to phase field methods. Solutions thermodynamics and temperature-concentration phase diagrams are covered, plus also a brief introduction to statistical thermodynamics and topological disorder. The Landau theory is included along with a general treatment of multicomponent instabilities in various types of thermodynamic applications, including phase separation and order-disorder transitions. Nucleation theory and spinodal decomposition are presented as extreme cases of a single approach involving the all-important role of fluctuations.In this way, it is hoped that this coverage will reconcile in a unified manner techniques generally presented separately in physics and materials texts.

This volume gathers selected contributions from the participants of the Banff International Research Station (BIRS) workshop Coupled Mathematical Models for Physical and Biological Nanoscale Systems and their Applications, who explore various aspects of the analysis, modeling and applications of nanoscale systems, with a particular focus on low dimensional nanostructures and coupled mathematical models for their description. Due to the vastness, novelty and complexity of the interfaces between mathematical modeling and nanoscience and nanotechnology, many important areas in these disciplines remain largely unexplored. In their efforts to move forward, multidisciplinary research communities have come to a clear understanding that, along with experimental techniques, mathematical modeling and analysis have become crucial to the study, development and application of systems at the nanoscale. The conference, held at BIRS in autumn 2016, brought together experts from three different communities working in fields where coupled mathematical models for nanoscale and biosystems are especially relevant: mathematicians, physicists (both theorists and experimentalists), and computational scientists, including those dealing with biological nanostructures. Its objectives: summarize the state-of-the-art; identify and prioritize critical problems of major importance that require solutions; analyze existing methodologies; and explore promising approaches to addressing the challenges identified. The contributions offer up-to-date introductions to a range of topics in nano and biosystems, identify important challenges, assess current methodologies and explore promising approaches. As such, this book will benefit researchers in applied mathematics, as well as physicists and biologists interested in coupled mathematical models and their analysis for physical and biological nanoscale systems that concern applications in biotechnology and medicine, quantum information processing and optoelectronics.

In a comprehensive treatment of Statistical Mechanics from thermodynamics through the renormalization group, this book serves as the core text for a full-year graduate course in statistical mechanics at either the Masters or Ph.D. level. Each chapter contains numerous exercises, and several chapters treat special topics which can be used as the basis for student projects. The concept of scaling is introduced early and used extensively throughout the text. At the heart of the book is an extensive treatment of mean field theory, from the simplest decoupling approach, through the density matrix formalism, to self-consistent classical and quantum field theory as well as exact solutions on the Cayley tree. Proceeding beyond mean field theory, the book discusses exact mappings involving Potts models, percolation, self-avoiding walks and quenched randomness, connecting various athermal and thermal models. Computational methods such as series expansions and Monte Carlo simulations are discussed, along with exact solutions to the 1D quantum and 2D classical Ising models. The renormalization group formalism is developed, starting from real-space RG and proceeding through a detailed treatment of Wilson's epsilon expansion. Finally the subject of Kosterlitz-Thouless systems is introduced from a historical perspective and then treated by methods due to Anderson, Kosterlitz, Thouless and Young. Altogether, this comprehensive, up-to-date, and engaging text offers an ideal package for advanced undergraduate or graduate courses or for use in self study.

This book presents the theory and practical applications of the Master equation approach, which provides a powerful general framework for model building in a variety of disciplines. The aim of the book is to not only highlight different mathematical solution methods, but also reveal their potential by means of practical examples. Part I of the book, which can be used as a toolbox, introduces selected statistical fundamentals and solution methods for the Master equation. In Part II and Part III, the Master equation approach is applied to important applications in the natural and social sciences. The case studies presented mainly hail from the social sciences, including urban and regional dynamics, population dynamics, dynamic decision theory, opinion formation and traffic dynamics; however, some applications from physics and chemistry are treated as well, underlining the interdisciplinary modelling potential of the Master equation approach. Drawing upon the author's extensive teaching and research experience and consulting work, the book offers a valuable guide for researchers, graduate students and professionals alike.

This book presents the statistical theory of complex wave scattering and quantum transport in physical systems which have chaotic classical dynamics, as in the case of microwave cavities and quantum dots, or which possess quenched randomness, as in the case of disordered conductors - with an emphasis on mesoscopic fluctuations. The statistical regularity of the phenomena is revealed in a natural way by adopting a novel maximum-entropy approach. Shannon's information entropy is maximised, subject to the symmetries and constraints which are physically relevant, within the powerful and non-perturbative theory of random matrices; this is a most distinctive feature of the book. Aiming for a self-contained presentation, the quantum theory of scattering, set in the context of quasi-one-dimensional, multichannel systems, and related directly to scattering problems in mesoscopic physics, is introduced in chapters two and three. The linear-response theory of quantum electronic transport, adapted to the context of mesoscopic systems, is discussed in chapter four. These chapters, together with chapter five on the maximum-entropy approach and chapter eight on weak localization, have been written in a most pedagogical style, suitable for use on graduate courses. In chapters six and seven, the problem of electronic transport through classically chaotic cavities and quasi-one-dimensional disordered systems is discussed. Many exercises are included, most of which are worked through in detail, aiding graduate students, teachers, and research scholars interested in the subject of quantum transport through disordered and chaotic systems.

This volume contains papers based on presentations at the "Nagoya Winter Workshop 2015: Reality and Measurement in Algebraic Quantum Theory (NWW 2015)", held in Nagoya, Japan, in March 2015. The foundations of quantum theory have been a source of mysteries, puzzles, and confusions, and have encouraged innovations in mathematical languages to describe, analyze, and delineate this wonderland. Both ontological and epistemological questions about quantum reality and measurement have been placed in the center of the mysteries explored originally by Bohr, Heisenberg, Einstein, and Schroedinger. This volume describes how those traditional problems are nowadays explored from the most advanced perspectives. It includes new research results in quantum information theory, quantum measurement theory, information thermodynamics, operator algebraic and category theoretical foundations of quantum theory, and the interplay between experimental and theoretical investigations on the uncertainty principle. This book is suitable for a broad audience of mathematicians, theoretical and experimental physicists, and philosophers of science.

This classic text provides an excellent introduction to a new and rapidly developing field of research. Now well established as a textbook in this rapidly developing field of research, the new edition is much enlarged and covers a host of new results.

Starting from a broad overview of heat transport based on the Boltzmann Transport Equation, this book presents a comprehensive analysis of heat transport in bulk and nanomaterials based on a kinetic-collective model (KCM). This has become key to understanding the field of thermal transport in semiconductors, and represents an important stride. The book describes how heat transport becomes hydrodynamic at the nanoscale, propagating very much like a viscous fluid and manifesting vorticity and friction-like behavior. It introduces a generalization of Fourier's law including a hydrodynamic term based on collective behavior in the phonon ensemble. This approach makes it possible to describe in a unifying way recent experiments that had to resort to unphysical assumptions in order to uphold the validity of Fourier's law, demonstrating that hydrodynamic heat transport is a pervasive type of behavior in semiconductors at reduced scales.

This volume collects ten surveys on the modeling, simulation, and applications of active particles using methods ranging from mathematical kinetic theory to nonequilibrium statistical mechanics. The contributing authors are leading experts working in this challenging field, and each of their chapters provides a review of the most recent results in their areas and looks ahead to future research directions. The approaches to studying active matter are presented here from many different perspectives, such as individual-based models, evolutionary games, Brownian motion, and continuum theories, as well as various combinations of these. Applications covered include biological network formation and network theory; opinion formation and social systems; control theory of sparse systems; theory and applications of mean field games; population learning; dynamics of flocking systems; vehicular traffic flow; and stochastic particles and mean field approximation. Mathematicians and other members of the scientific community interested in active matter and its many applications will find this volume to be a timely, authoritative, and valuable resource.

The author introduces the supersymmetric localization technique, a new approach for computing path integrals in quantum field theory on curved space (time) defined with interacting Lagrangian. The author focuses on a particular quantity called the superconformal index (SCI), which is defined by considering the theories on the product space of two spheres and circles, in order to clarify the validity of so-called three-dimensional mirror symmetry, one of the famous duality proposals. In addition to a review of known results, the author presents a new definition of SCI by considering theories on the product space of real-projective space and circles. In this book, he explains the concept of SCI from the point of view of quantum mechanics and gives localization computations by reducing field theoretical computations to many-body quantum mechanics. He applies his new results of SCI with real-projective space to test three-dimensional mirror symmetry, one of the dualities of quantum field theory. Real-projective space is known to be an unorientable surface like the Mobius strip, and there are many exotic effects resulting from Z2 holonomy of the surface. Thanks to these exotic structures, his results provide completely new evidence of three-dimensional mirror symmetry. The equivalence expected from three-dimensional mirror symmetry is transformed into a conjectural non-trivial mathematical identity through the new SCI, and he performs the proof of the identity using a q-binomial formula.

This book investigates the common nature of granular and active systems, which is rooted in their intrinsic out-of-equilibrium behavior, with the aim of finding minimal models able to reproduce and predict the complex collective behavior observed in experiments and simulations. Granular and active matter are among the most studied systems in out-of-equilibrium statistical physics. The book guides readers through the derivation of a fluctuating hydrodynamic description of granular and active matter by means of controlled and transparent mathematical assumptions made on a lattice model. It also shows how a macroscopic description can be provided from microscopic requirements, leading to the prediction of collective states such as cooling, swarming, clustering and the transitions among them. The analytical and numerical results shed new light on the physical connection between the local, microscopic properties of few particles and the macroscopic collective motion of the whole system.

This book is about dark matter's particle nature and the implications of a new symmetry that appears when a hypothetical dark matter particle is heavy compared to known elementary particles. Dark matter exists and composes about 85% of the matter in the universe, but it cannot be explained in terms of the known elementary particles. Discovering dark matter's particle nature is one of the most pressing open problems in particle physics. This thesis derives the implications of a new symmetry that appears when the hypothetical dark matter particle is heavy compared to the known elementary particles, a situation which is well motivated by the null results of searches at the LHC and elsewhere. The new symmetry predicts a universal interaction between dark matter and ordinary matter, which in turn may be used to determine the event rate and detectable energy in dark matter direct detection experiments. The computation of heavy wino and higgsino dark matter presented in this work has become a benchmark for the field of direct detection. This thesis has also spawned a new field of investigation in dark matter indirect detection, determining heavy WIMP annihilation rates using effective field theory methods. It describes a new formalism for implementing Lorentz invariance constraints in nonrelativistic theories, with a surprising result at 1/M^4 order that contradicts the prevailing ansatz in the past 20 years of heavy quark literature. The author has also derived new perturbative QCD results to provide the definitive analysis of key Standard Model observables such as heavy quark scalar matrix elements of the nucleon. This is an influential thesis, with impacts in dark matter phenomenology, field theory formalism and precision hadronic physics.

Perturbative Algebraic Quantum Field Theory (pAQFT), the subject of this book, is a complete and mathematically rigorous treatment of perturbative quantum field theory (pQFT) that doesn't require the use of divergent quantities and works on a large class of Lorenzian manifolds. We discuss in detail the examples of scalar fields, gauge theories and the effective quantum gravity. pQFT models describe a wide range of physical phenomena and have remarkable agreement with experimental results. Despite this success, the theory suffers from many conceptual problems. pAQFT is a good candidate to solve many, if not all, of these conceptual problems. Chapters 1-3 provide some background in mathematics and physics. Chapter 4 concerns classical theory of the scalar field, which is subsequently quantized in chapters 5 and 6. Chapter 7 covers gauge theory and chapter 8 discusses effective quantum gravity. The book aims to be accessible to researchers and graduate students, who are interested in the mathematical foundations of pQFT.

This book presents Markov and quantum processes as two sides of a coin called generated stochastic processes. It deals with quantum processes as reversible stochastic processes generated by one-step unitary operators, while Markov processes are irreversible stochastic processes generated by one-step stochastic operators. The characteristic feature of quantum processes are oscillations, interference, lots of stationary states in bounded systems and possible asymptotic stationary scattering states in open systems, while the characteristic feature of Markov processes are relaxations to a single stationary state. Quantum processes apply to systems where all variables, that control reversibility, are taken as relevant variables, while Markov processes emerge when some of those variables cannot be followed and are thus irrelevant for the dynamic description. Their absence renders the dynamic irreversible. A further aim is to demonstrate that almost any subdiscipline of theoretical physics can conceptually be put into the context of generated stochastic processes. Classical mechanics and classical field theory are deterministic processes which emerge when fluctuations in relevant variables are negligible. Quantum mechanics and quantum field theory consider genuine quantum processes. Equilibrium and non-equilibrium statistics apply to the regime where relaxing Markov processes emerge from quantum processes by omission of a large number of uncontrollable variables. Systems with many variables often self-organize in such a way that only a few slow variables can serve as relevant variables. Symmetries and topological classes are essential in identifying such relevant variables. The third aim of this book is to provide conceptually general methods of solutions which can serve as starting points to find relevant variables as to apply best-practice approximation methods. Such methods are available through generating functionals. The potential reader is a graduate student who has heard already a course in quantum theory and equilibrium statistical physics including the mathematics of spectral analysis (eigenvalues, eigenvectors, Fourier and Laplace transformation). The reader should be open for a unifying look on several topics.