Physics and the life sciences have established new connections within the past few decades, resulting in biological physics as an established subfield with strong groups working in many physics departments. These interactions between physics and biology form a two-way street with physics providing new tools and concepts for understanding life, while biological systems can yield new insights into the physics of complex systems. To address the challenges of this interdisciplinary area, The Physics of Proteins: An Introduction to Biological Physics and Molecular Biophysics is divided into three interconnected sections. In Parts I and II, early chapters introduce the terminology and describe the main biological systems that physicists will encounter. Similarities between biomolecules, glasses, and solids are stressed with an emphasis on the fundamental concepts of living systems. The central section (Parts III and IV) delves into the dynamics of complex systems. A main theme is the realization that biological systems, in particular proteins, do not exist in unique conformations but can assume a very large number of slightly different structures. This complexity is captured in the concept of a free energy landscape and leads to the conclusion that fluctuations are crucial for the functioning of biological systems. The final chapter of this section challenges the reader to apply these concepts to a problem that appears in the current literature. An extensive series of appendices (Part V) provide descriptions of the key physical tools and analytical methods that have proven powerful in the study of the physics of proteins. The appendices are designed to be consulted throughout the section on protein dynamics without breaking the deductive flow of the logic in the central section of the book.

The aim of the book is to present, in a novel and unified fashion, the elements of Mechanics in Material Space or Configurational Mechanics, with applications to fracture and defect mechanics. This mechanics, in contrast to Newtonian mechanics in physical space, is concerned with defects such as cracks and dislocations, which are embedded in the material and might move in it. The level is kept accessible to any engineer, scientist or graduate student possessing some knowledge of calculus and partial differential equations, and working in the various areas where rational use of materials is essential.

Polarization Spectroscopy of Ionized Gases describes the physical principles of the technique and its applications to remote sensing. Transport phenomena and local anisotropies can be studied. The theoretical part of the book considers the basic phenomena of the ordering of the velocities of fast exciting charged particles. The polarization of the outer electron shells of excited atoms or molecules is described, and a variety of effects are examined in detail. An integral equation is derived which gives the intensity and polarization of emitted lines. Methods for solving the equation are analyzed. Universal spectropolarimetric remote sensing has been applied to low pressure gas discharges in the laboratory and to non-thermal processes in the solar atmosphere. For researchers interested in the remote sensing of ionized gases.

Accelerated degradation of soils and surface waters produce increasing problems in many parts of the world. Within this context, the book addresses the topic Application of Physically Based Soil Erosion Models in order to present some essential tools for improving land-use strategies and conservation measures. Over the last 20 years, the need for more accurate assessments of soil losses and sediment yields has led to the development of some highly complex, process-based soil erosion models. In 14 papers, specialists from 5 European countries, the USA and Brazil report on practical applications of these models and give insight into the latest developments. This book will help to implement state-of-the-art soil erosion prediction technologies within soil and water conservation planning and assessment. Hence, the book should be of special interest to agricultural and environmental engineers, hydrologists, soil scientists and geoscientists.

The principal objectives of the Project were to further the establishment of national "operational" weather radar networks, harmonise operations, data handling and processing to minimise the difficulties of, and maximise the benefits of international weather radar data exchange. To transmit the data efficiently, standardised formats and protocols were essential. These were formulated by a working group whose efforts were rewarded when WMO accepted their proposal for worldwide use. A multi-national pilot project area was established and streams of data from each of the countries involved were merged and integrated with data from the satelite METEOSAT. The composite image, known as "the COST image" was regularly distributed via the global telecommunication system of WMO, the public telephone switched network and the Olympus satelite. The utility of the COST image was assessed for, inter alia, short-period forecasting, aviation flight assistance, maritime forecasting and the initialisation of numerical weather prediction models. In all cases, the COST image was found to be beneficial. A report containing proposed curricula for the training of meteorologists, hydrologists and other major users of weather radar data was sent to WMO for possible adoption as one of their standard training manuals. As a report of international scientific cooperation, this is a success story. All the principal objectives of the Memorandum of Understanding were achieved both within time and budget. It is a tale of international cooperation at its best.

Recent state-of-the-art technologies in fabricating low-loss optical and mechanical components have significantly motivated the study of quantum-limited measurements with optomechanical devices. Such research is the main subject of this thesis. In the first part, the author considers various approaches for surpassing the standard quantum limit for force measurements. In the second part, the author proposes different experimental protocols for using optomechanical interactions to explore quantum behaviors of macroscopic mechanical objects. Even though this thesis mostly focuses on large-scale laser interferometer gravitational-wave detectors and related experiments, the general approaches apply equally well for studying small-scale optomechanical devices.

The author is the winner of the 2010 Thesis prize awarded by the Gravitational Wave International Committee.

Effective and ef cient modelling of in nite media is important for the production of accurate and useful solutions for many scienti c and engineering problems invo- ing in nite domains (Bettess 1977, 1980; Chow and Smith 1981; Medina and Taylor 1983; Zhang and Zhao 1987; Zhao et al. 1989; Zhao and Valliappan 1993a, b, c, d; Astley 1996, 1998; Yang et al. 1996; Yang and Huang 2001; Yun et al. 2000, 2007; Wang et al. 2006). Some typical examples involving in nite domains are as follows: (1) earthquake wave propagation within the upper crust of the Earth in the elds of geophysics and seismology; (2) dynamic structure-foundation interaction in the elds of geotechnical, civil and dam engineering; and (3) transient pore- uid ow, heat transfer and mass transport within the interior of the Earth in the elds of g- science and geoenvironmental engineering. Although the solid Earth is viewed as a bounded domain at the terrestrial scale, it can be treated as an unbounded domain at the human scale. For instance, in the case of predicting possible property damages caused by an earthquake, only a limited region around the epicentre is of interest because the earthquake wave energy is signi cantly reduced as the distance from the epicentre is increased.

The Constraint Equations.- The Penrose Inequality.- The Global Existence Problem in General Relativity.- Smoothness at Null Infinity and the Structure of Initial Data.- Status Quo and Open Problems in the Numerical Construction of Spacetimes.- The Einstein-Vlasov System.- Future Complete U(1) Symmetric Einsteinian Spacetimes, the Unpolarized Case.- Future Complete Vacuum Spacetimes.- The Cauchy Problem on Spacetimes That Are Not Globally Hyperbolic.- Cheeger-Gromov Theory and Applications to General Relativity.- Null Geometry and the Einstein Equations.- Group Actions on Lorentz Spaces, Mathematical Aspects: A Survey.- Gauge, Diffeomorphisms, Initial-Value Formulation, Etc.

This book provides an analysis of an actual problem of the evolution of deep matter under the conditions of the upper mantle, transition zone, and uppermost lower mantle. This issue has a fundamental importance in geochemistry, petrology, mineralogy, and crystalochemistry of the mantle, at different depths. The authors discuss new experimental research on the composition and conditions of the chromium-bearing minerals genesis and their associations in the Earth's mantle. The experimental data are compared with the natural mineral assemblages, allowing a refinement of the structure and composition of the deep Geospheres of the Earth. The results of the physicochemical experiments in the "MgO-SiO2-Cr2O3" model and the multicomponent systems play a major role in understanding the phase diagrams of these systems, the structural patterns of chromium-bearing phases and the influence of Cr on P-T parameters in the Earth's mantle.

The book gathers the invited talks to the XIII JENAM conference, organized this time by the European Astronomical Society (EAS) and the Spanish Astronomical Society (SEA), and hosted by the Instituto de Astrofisica de Andalucia (CSIC). All branches of astrophysics are encompassed from the largest scales and cosmology to the solar system and the Sun, through the galaxies and the stars, including a section on astronomical instrumentation. Very relevant experts from all over the world speak in a single book about the most recent, exciting results from their fields in a way which is useful for both researchers in these fields and colleagues working in other disciplines. The book is accompanied by a CD-ROM including the remaining contributions of the meeting in PDF format, hence opening a wide panorama of what is going on in astrophysics nowadays.

This thesis develops the dispersive optical model into a tool that allows for the assessment of the validity of nuclear reaction models, thereby generating unambiguous removal probabilities of nucleons from valence orbits using the electron-induced proton knockout reaction. These removal probabilities document the substantial quantitative degree in which nuclei deviate from the independent-particle model description. Another outcome reported within is the prediction for the neutron distribution of Ca-40, Ca-48, and Pb-208. The neutron radii of these nuclei have direct relevance for the understanding of neutron stars and are currently the subject of delicate experiments. Unlike other approaches, the current method is consistent with all other relevant data and describes nuclei beyond the independent-particle model. Finally, a new interpretation of the saturation probabilities of infinite nuclear matter is proposed suggesting that the semi-empirical mass formula must be supplemented with a better extrapolation from nuclei to infinite matter.

The book reports an extended version of the lectures given by distinguished scholars at the workshop "Fault diagnosis and fault tolerance for dynamic systems" held in conjunction with the 2002 IEEE International Symposium on Intelligent Control in Vancouver, Canada, from 27-30 October 2002. The book collects some of the most recent results in fault diagnosis and fault tolerant systems with particular emphasis on mechatronic systems. Each chapter focuses on either theoretical aspects or applications to different fields of interest in mechatronics such as industrial robotics, underwater vehicles, hydraulic systems, and flight control.

Fundamental unsolved problems of stellar astrophysics include the effects of angular momentum on stellar structure and evolution, the nature and efficiency of the processes by which angular momentum is redistributed within and lost from stars, and the role that stellar rotation plays in enhancing or driving stellar mass loss. There appears to be a qualitative change in the nature and efficiency of these mechanisms near spectral type FO: hotter (more massive) stars typically retain more angular momentum at least until they reach the main sequence, while cooler stars typically spin down quickly. For the hotter stars, recent work suggests a strong link between the type of pulsation behavior, the mass loss rates, and the rotation velocity. If the same mechanisms are able to drive mass loss from the main sequence A stars, as has recently been proposed, then the current interpretations of a number of observations will be drastically affected: e. g. the ages of clusters may be incorrect by up to a factor of two, and the surface abundances of isotopes of He, Li and Be may no longer give constraints on cosmological nucleosynthesis. There are also effects on the evolution of the abundances of elements in the interstellar medium and on the general evolution of populations of stars. Thus the questions of the mechanisms of angular momentum and mass loss of stars more massive than the sun is important not only for stellar studies but for the foundations of much of modern astrophysics.

This book provides a common theoretical and practical basis to the multifaceted nature of magma mixing. This process represents a fundamental phenomenon both in the evolution of igneous rocks and in triggering explosive volcanic eruptions. The topic is attacked surgically merging field evidence, numerical models, and experiments in order to draw the most complete picture about this natural process. Arguments are discussed in the light of Chaos Theory and Fractal Geometry as new tools to understand the role of magma mixing as a fundamental petrological and volcanological process. The book is intended to be a source of information and a stimulus for new ideas in students, young and possibly more experienced researches.

These are the proceedings of international conference on Numerical As trophysics 1998 (NAP98), held at National Olympic Memorial Youth Cen ter, in Tokyo, Japan in the period of March 10 - 13, 1998, and hosted by the National Astronomical Observatory, Japan (NAOJ). In the last decade numerical simulations have grown up as a major tool for astrophysics. Numerical simulations give us invaluable informa tion on complex systems and physical processes under extreme conditions which can be neither realized by experiments nor directly observed. Super computers and special purpose computers may work as very large telescopes and special purpose telescopes for theoretical astrophysics, respectively. Nu merical astrophysics ranks with other tool-oriented astronomy such as ra dio astronomy, infrared astronomy, ultraviolet astronomy, X-ray astronomy, and ')'-ray astronomy. This conference, NAP98, was planned to explore recent advances in astrophysics aided by numerical simulations. The subjects of the confer ence included the large-scale structure formation, galaxy formation and evolution, star and planets formation, accretion disks, jets, gravitational wave emission, and plasma physics. NAP98 had also sessions on numerical methods and computer science. The conference was attended by 184 sci entists from 21 countries. We enjoyed excellent talks, posters, videos, and discussions: there are 40 oral presentations, 96 posters and 16 video pre sentations. We hope that these proceedings and accompanying CD-ROM replay the friendly but inspiring atmosphere of the conference."

This book is an introduction to the dynamics of reaction-diffusion systems, with a focus on fronts and stationary spatial patterns. Emphasis is on systems that are non-standard in the sense that either the transport is not simply classical diffusion (Brownian motion) or the system is not homogeneous. A important feature is the derivation of the basic phenomenological equations from the mesoscopic system properties. Topics addressed include transport with inertia, described by persistent random walks and hyperbolic reaction-transport equations and transport by anomalous diffusion, in particular subdiffusion, where the mean square displacement grows sublinearly with time. In particular reaction-diffusion systems are studied where the medium is in turn either spatially inhomogeneous, compositionally heterogeneous or spatially discrete. Applications span a vast range of interdisciplinary fields and the systems considered can be as different as human or animal groups migrating under external influences, population ecology and evolution, complex chemical reactions, or networks of biological cells. Several chapters treat these applications in detail.

This book focuses on the assembly, organization and resultant collective dynamics of soft matter systems maintained away from equilibrium by an energy flux. Living matter is the ultimate example of such systems, which are comprised of different constituents on very different scales (ions, nucleic acids, proteins, cells). The result of their diverse interactions, maintained using the energy from physiological processes, is a fantastically well-organized and dynamic whole. This work describes results from minimal, biomimetic systems and primarily investigates membranes and active emulsions, as well as key aspects of both soft matter and non-equilibrium phenomena. It is shown that these minimal reconstitutions are already capable of a range of complex behaviour such as nonlinear electric responses, chemical communication and locomotion. These studies will bring us closer to a fundamental understanding of complex systems by reconstituting key aspects of their form and function in simple model systems. Further, they may also serve as the first technological steps towards artificial soft functional matter.

Heme and chlorophyll (Chl) are porphyrins. Porphyrins (also referred to as tetrapyrroles) are essential for life in the biosphere. Chlorophyll catalyzes the conversion of solar energy to chemical energy via the process of photosynthesis. Organic life in the biosphere is made possible by consumption of the chemical energy generated by photosynthesis. Hemes are the prosthetic groups of cytochromes which are involved in electron transport during oxidative phosphorylation and photosynthetic phosphorylation which generate ATP and NADPH. The latter are essential for many cellular functions. Chlorophyll on the other hands catalyzes the process of photosynthesis. Indeed, life in the biosphere depends on the process of photosynthesis which converts light energy, carbon dioxide and water into the chemical energy, required for the formation of food and fiber. Photosynthetic efficiency is controlled by extrinsic factors such as the availability of water, CO2, inorganic nutrients, ambient temperature and the metabolic and developmental state of the plant, as well as by intrinsic factors (Lien and San Pietro, 1975). The most important intrinsic factor is the efficiency of the photosynthetic electron transport system (PETS). Conventional agriculture is one of the few human activities that have not undergone a revolution to join other activities such as overcoming gravity by flying, and landing on the moon, crossing underwater the polar cap, and communicating wirelessly over long distances via electromagnetic waves. We now feel that enough biochemical and molecular biological knowledge has accumulated to render this dream amenable to experimentation. We believe that the time has come to bioengineer chloroplasts capable of synthesizing a short chain carbohydrate such as glycerol at rates that approach the upper theoretical limits of photosynthesis [Rebeiz, C. A. (2010) Investigations of possible relationships between the chlorophyll biosynthetic pathway and the assembly of chlorophyll-protein complexes and photosynthetic efficiency. In: Rebeiz, C. A. Benning, C., Bohnert, H.J., Daniell, H., Hoober J. K., Lichtenthaler, H. K., Portis , A. R., and Tripathy, B. C. eds. The chloroplast: Basics and Applications. Springer. The Netherlands, p 1-24]. In order to achieve this goal a thorough knowledge of the Chl biosynthetic pathway is needed along with knowledge in other domains (Rebeiz 2010). In this context, this monograph is devoted to an in depth discussion of our present knowledge of the Chl biosynthetic pathway. The complexity and biochemical heterogeneity of the Chl biosynthetic pathway and the relationship of this complexity to the structural and biosynthetic complexity of photosynthetic membranes will be emphasized. We will also emphasize in historical perspective, key stages in our understanding of the Chl biosynthetic heterogeneity. The reader should keep in mind that a complex biosynthetic process is only fully understood when it becomes possible to reconstitute in vitro every step of the process. We are not yet at this stage of understanding of thylakoid membrane biogenesis. Considerable progress has been achieved however, in the understanding of numerous facets of the Chl biosynthetic pathway, namely (a) detection and identification of various major and minor metabolic intermediates (b) precursor-product relationships between various intermediates, (c) structure and regulation of many enzymes of the pathway, and (d) the relationship of the Chl biosynthetic heterogeneity to the structural and functional heterogeneity of thylakoid membranes. In addition topics related to the development of Analytical techniques, Cell-free systems, Herbicides, Insecticides, and Cancericides are also discussed.

The reader will find in this volume the Proceedings of the NATO Advanced Study Institute held in Maratea-Acquafredda, Italy, between June 29 and July 12, 1997, entitledTHE DYNAMICS OF SMALL BODIES IN THE SOLAR SYSTEM: A MAJOR KEY TO SOLAR SYSTEM STUDIES . This Advanced Study Institute was the latest in the 'Cortina' series of NATO ASI's begun in the early 1970's firstly under the directorship of Professor Victor Szebehely and subsequently under Professor Archie Roy. All, except the latest, were held at the Antonelli Institute, Cortina d'Ampezzo, Italy. Many of those now active in the field made their first international contacts at these Institutes. The Institutes bring together many of the brightest of our young people working in dynamical astronomy, celestial mechanics and space science, enabling them to obtain an up-to-date synoptic view of their subjects delivered by lecturers of high international reputation. The proceedings from these institutes have been well-received in the internationalcommunity of research workers in the disciplines studied. The present institute included 15 series of lectures given by invited speakers and some 45 presentations made by the other participants. The majority of these contributions are includedinthese proceedings.

The NATO ARW in Irkutsk was an excellent occasion for the coming together of Eastern and Western scientists who are involved in tropospheric science; the workshop has greatly contributed to the scientific and social understanding among the participants from the many different countries. Many new personal contacts were made which will help to strengthen future collaborations. In particular, the Lake Baikal area and the Limnological Institute offer splendid opportunities for environmental research which, in part, is already on going. For most participants it was the first time to see the impressive nature of the Lake Baikal region. Hopefully, there will be a chance for a follow-up event in Siberia where researchers from the East and West can again meet and engage in fruitful scientific dialogue. The book contains extended abstracts of the lectures and the poster presentations presented at the NATO ARW "Global Atmospheric Change and its Impact on Regional Air Quality" Irkutsk, Lake Baikal, Russian Federation, August 21-27, 2001. The ARW was composed of 22 oral presentations by key lecturers and 6 additional shorter oral presentations from participants. In a special poster session the 36 poster contributions were presented and discussed. Unfortunately not all contributors submitted extended abstracts, however, to compensate two contributions have been added from 2 participants who were originally invited but were unable to attend.

This volume - like the NATO Advanced Research Workshop on which it is based - addresses the fundamental science that contributes to our understanding of the potential risks from ecological terrorism, i.e. dirty bombs, atomic explosions, intentional release of radionuclides into water or air. Both effects on human health (DNA and systemic effects) and on ecosystems are detailed, with particular focus on environmentally relevant low-dose ranges. The state-of-the-art contributions to the book are authored by leading experts; they tackle the relevant questions from the perspectives of radiation genetics, radiobiology, radioecology, radiation epidemiology and risk assessment.

If our eyes were radio rather than optical wide-band detectors it is well known that for us the brightest object in the sky would still be the Sun; that planets, stars and the Milky Way would still shine feebly (and that we would still occasionally be blinded by man-made sources). What is less well known is that quite a different earthbound overcast would hover about us, with its climatic zones, its seasonal changes, its unpredictable storms and scintillating transparence. To be sure, we can get a sort of glimpse of this peculiar type of weather when we tune our receiver to radio broad casting from some remote spot, or photograph the Earth from space at certain specific wavelengths. Nevertheless no one has ever looked at the ionized shroud of the Earth without the help of sophisticated apparatus, and this is one of the reasons why in this domain the phenomena are not easily abstracted from the use of specific techniques. For generations, the study of the ionosphere has been deeply interwoven with the practice of radio communication and detection. Today however, ionospheric physics is best thought of as a branch of space physics; that part of physics which deals with processes at work in the solar system and methods developed for its exploration."

In this book, the author draws on his broad experience to describe both the theory and the applications of wave propagations. The contents are presented in four parts and the sequence of these parts reflect the development of ionospheric and propagational research in areas such as space research geophysics and communications. The first part of the book presents an outline of the theory of electromagnetic waves propagating in a cold electron plasma. For reference, vector analysis, dyadics and eigenvalues introduced in this part are presented in the appendices. Practical aspects of radio wave propagation are the subject of the second part. The typical conditions in different frequency ranges are discussed and the irregular features of the ionospheric structure such as sound and gravity waves are also considered. Warm plasma and the effects of ions are considered in the third part, which includes a discussion of sound-like waves in electron and ion plasmas. Nonlinear effects and instabilities are described in the fourth part.

Relativistic jets are a powerful, spectacular, yet poorly-understood phenomenon associated with accreting black holes and neutron stars. The question of the internal structure - matter content and magnetic field - of relativistic jets is of prime importance for our understanding of the underlying physics. The study of circular polarisation is both challenging and potentially very rewarding, and when applied to relativistic jets has the potential to probe the structure of the jets in unique ways.
This book compiles the contributions, both theoretical and observational, from a three-day workshop held in Amsterdam in July 2002, concerning the study of circular polarisation from relativistic jet sources.

The 37th Annual Denver Conference on Applications of X-Ray Analysis was held August 1-5, 1988, at the Sheraton Steamboat Resort and Conference Center, Steamboat Springs, Colorado. As usual, alternating with x-ray diffraction, the emphasis this year was x-ray fluorescence, but as has been the pattern for several occasions over the last few years, the Plenary Session did not deal with that subject, specifically. In an attempt to introduce the audience to one of the new developments in x-ray analysis, the title of the session was "High Brilliance Sources/Applications," and dealt exclusively with synchrotron radiation, a topic which has made a very large impact on the x-ray community over the last decade. As the organizer and co-chairman of the Plenary Session (with Paul Predecki), it is my responsibility to report on that session here. The Conference had the privilege of obtaining the services of some of the preeminent practitioners of research using this remarkable x-ray source; they presented the audience with unusually lucid descriptions of the work which has been accomplished in the development and application of the continuous, high intensity, tunable, polarized and collimated x-rays available from no facility other than these specialized storage rings. The opening lecture (and I use that term intentionally) was an enthusiastic description of "What is Synchrotron Radiation?" by Professor Boris Batterman of Cornell University and the Cornell High Energy Synchrotron Sourc(! (CHESS).