Extensively revised, accessible, and up-to-date—the new edition of Tate’s classic soil microbiology text Now in its second edition, Soil Microbiology offers students a broad knowledge of the behavior and function of microbes in soil—all the essentials they will need in order to address the long-term stewardship of the earth’s soil resources. Designed for use as the core text for microbiology courses in the soil science curriculum, it explores the tremendous diversity of life found in soil ecosystems. With its amplified focus on the reclamation of contaminated and damaged soils, greenhouse gas production, and the sustainability of soil ecosystems, this book is an ideal resource for upper-level undergraduates and graduate students, as well as a useful reference for professionals in soil and environmental science. Soil Microbiology, Second Edition features:

• A focus on new advances as well as environmental science aspects of soil microbiology
• Completely new chapters on the biological diversity of soil ecosystems, soil remediation, and soil systems management
• A strong emphasis on research in real-world settings as well as theoretical concerns

A proper understanding of the diversity, systematics, and nomenclature of microbes is increasingly important in many branches of biological science. The molecular approach to phylogenetic analysis - pioneered by Carl Woese in the 1970s and leading to the three-domain model (Archaea, Bacteria, Eucarya) - has revolutionized our thinking about evolution in the microbial world. The technological innovation of modern molecular biology and the rapid advancement in computational science have led to a flood of nucleic acid sequence information, bioinformatic tools, and phylogenetic inference methods. Phylogenetic analysis has long played a central role in microbiology and the emerging fields of comparative genomics and phylogenomics require substantial knowledge and understanding of phylogenetic analysis and computational methods. In this book, leading scientists from around the world explore current concepts in molecular phylogeny and their application with respect to microorganisms. The authors describe the different approaches applied today to elucidate the molecular phylogeny of prokaryotes (and eukaryotic protists) and review current phylogenetic methods, techniques, and software tools. Topics covered include: a historical overview, computational tools, multilocus sequence analysis, 16S rRNA phylogenetic trees, rooting of the universal tree of life, applications of conserved indels, lateral gene transfer, endosymbiosis, and the evolution of plastids.

This is a completely revised edition, including new material, from 'Culture Media for Food Microbiology' by J.E.L. Corry et al., published in Progress in Industrial Microbiology, Volume 34, Second Impression 1999.

Written by the Working Party on Culture Media, of the International Committee on Food Microbiology and Hygiene, this is a handy reference for microbiologists wanting to know which media to use for the detection of various groups of microbes in food, and how to check their performance.

The first part comprises reviews, written by international experts, of the media designed to isolate the major groups of microbes important in food spoilage, food fermentations or food-borne disease. The history and rationale of the selective agents, and the indicator systems are considered, as well as the relative merits of the various media. The second part contains monographs on approximately 90 of the most useful media.

The first edition of this book has been frequently quoted in standard methods, especially those published by the International Standards Organisation (ISO) and the European Standards Organisation (CEN), as well as in the manuals of companies manufacturing microbiological media. In this second edition, almost all of the reviews have been completely rewritten, and the remainder revised. Approximately twelve monographs have been added and a few deleted. This book will be useful to anyone working in laboratories examining food - industrial, contract, medical, academic or public analyst, as well as other microbiologists, working in the pharmaceutical, cosmetic and clinical (medical and veterinary) areas - particularly with respect to quality assurance of media and methods in relation to laboratory accreditation.

The origin of life is one of the biggest unsolved scientific questions. This book deals with the formation and first steps of the chemical evolution of nucleic acids, including the chemical roots behind the origin of their components from the simplest sources in a geochemical context. Chemical evolution encompasses the chemical processes and interactions conducive to self-assembly and supramolecular organization, leading to an increase of complexity and the emergence of life. The book starts with a personal account of the pioneering work of Stanley Miller and Jeffrey Bada on the Chemistry of Origins of Life and how the development of organic chemistry beginning in the 19th century led to the emergence of the field of prebiotic chemistry, situated at the frontier between organic, geo- and biochemistry. It then continues reviewing in tutorial manner current central topics regarding the organization of nucleic acids: the origin of nucleobases and nucleosides, their phosphorylation and polymerization and ultimately, their self-assembly and supramolecular organization at the inception of life.

This book presents comprehensive reviews on the principles, design and applications of nanomaterials in the food and agriculture sectors. This book is the fifth of several volumes on Nanoscience in Food and Agriculture, published in the series Sustainable Agriculture Reviews.

This book discusses how aquatic microbial communities develop interactive metabolic coordination both within and between species to optimize their energetics. It explains that microbial community structuration often includes functional stratification among a multitude of organisms that variously exist either suspended in the water, lodged in sediments, or bound to one another as biofilms on solid surfaces. The authors describe techniques that can be used for preparing and distributing microbiologically safe drinking water, which presents the challenge of successfully removing the pathogenic members of the aquatic microbial community and then safely delivering that water to consumers. Drinking water distribution systems have their own microbial ecology, which we must both understand and control in order to maintain the safety of the water supply. Since studying aquatic microorganisms often entails identifying them, the book also discusses techniques for successfully isolating and cultivating bacteria. As such, it appeals to microbiologists, microbial ecologists and water quality scientists.

The aim of this book is to present, in depth, updated information on soil and microbial processes involved in mixed plantations of Eucalyptus and N2-fixing species, especially Acacia mangium, focusing on Forestry, Soils, Biology, Ecosystem Services and Sustainability. The potential of substituting chemical N fertilizer by a consortium of leguminous species that fix atmospheric nitrogen is an interesting solution for a more sustainable, economically and environmentally sound forest system. Among the main topics, we present reference topics on soil microbiology, as biological nitrogen fixation, the role of mycorrhiza in mixed plantations, bio-indicators of soil quality, and plantgrowth promoting bacteria with biotechnological potential. Here we discuss Ecosystem services and ecological benefits of these systems, the invasive potential of A.mangium, as well as the regulations and perspectives of land use policies for mixed forests and their role in the sustainability of the system.

This book presents a summary of terrestrial microbial processes, which are a key factor in supporting healthy life on our planet. The authors explain how microorganisms maintain the soil ecosystem through recycling carbon and nitrogen and then provide insights into how soil microbiology processes integrate into ecosystem science, helping to achieve successful bioremediation as well as safe and effective operation of landfills, and enabling the design of composting processes that reduce the amount of waste that is placed in landfills. The book also explores the effect of human land use, including restoration on soil microbial communities and the response of wetland microbial communities to anthropogenic pollutants. Lastly it discusses the role of fungi in causing damaging, and often lethal, infectious diseases in plants and animals.

This book is a treatise on microbial ecotoxicology, discussing the effect of pollutants on microbial ecosystems and the role of microorganisms in ecosystems services. Emphasizing the microbial responses to pollution at different biological levels, it focuses on metabolic pathways, genetic adaptation and response at the whole-microbial community level. It also addresses the ecological indicators of ecosystem recovery, as well as microbial biomarkers and biosensors as tools for microbial ecotoxicology.

This second edition textbook offers an expanded conceptual synthesis of microbial ecology with plant and animal ecology. Drawing on examples from the biology of microorganisms and macroorganisms, this textbook provides a much-needed interdisciplinary approach to ecology. The focus is the individual organism and comparisons are made along six axes: genetic variation, nutritional mode, size, growth, life cycle, and influence of the environment. When it was published in 1991, the first edition of Comparative Ecology of Microorganisms and Macroorganisms was unique in its attempt to clearly compare fundamental ecology across the gamut of size. The explosion of molecular biology and the application of its techniques to microbiology and organismal biology have particularly demonstrated the need for interdisciplinary understanding. This updated and expanded edition remains unique. It treats the same topics at greater depth and includes an exhaustive compilation of both the most recent relevant literature in microbial ecology and plant/animal ecology, as well as the early research papers that shaped the concepts and theories discussed. Among the completely updated topics in the book are phylogenetic systematics, search algorithms and optimal foraging theory, comparative metabolism, the origins of life and evolution of multicellularity, and the evolution of life cycles. From Reviews of the First Edition: "John Andrews has succeeded admirably in building a bridge that is accessible to all ecologists." -Ecology "I recommend this book to all ecologists. It is a thoughtful attempt to integrate ideas from, and develop common themes for, two fields of ecology that should not have become fragmented." -American Scientist "Such a synthesis is long past due, and it is shameful that ecologists (both big and little) have been so parochial." -The Quarterly Review of Biology

This book provides essential molecular techniques and protocols for analyzing microbes that are useful for developing novel bio-chemicals, such as medicines, biofuels, and plant protection substances. The topics and techniques covered include: microbial diversity and composition; microorganisms in the food industry; mass cultivation of sebacinales; host-microbe interaction; targeted gene disruption; function-based metagenomics to reveal the rhizosphere microbiome; mycotoxin biosynthetic pathways; legume-rhizobium symbioses; multidrug transporters of yeast; drug-resistant bacteria; the fungal endophyte piriformospora indica; medicinal plants; arbuscular mycorrhizal fungi; biosurfactants in microbial enhanced oil recovery; and biocontrol of the soybean cyst nematode with root endophytic fungi; as well as microbe-mediated drought tolerance in plants.

The book explores the fundamental principles, advances in forensic techniques, and its application on forensic DNA analysis. The book is divided into three modules; the first module provides the historical prospect of forensic DNA typing and introduces fundamentals of forensic DNA typing, methodology, and technical advancements, application of STRs, and DNA databases for forensic DNA profile analysis. Module 2 examines the problems and challenges encountered in extracting DNA and generating DNA profiles. It provides information on the methods and the best practices for DNA isolation from forensic biological samples and human remains like ancient DNA, DNA typing of skeletal remains and disaster victim identification, the importance of DNA typing in human trafficking, and various problems associated with capillary electrophoresis. Module 3 emphasizes various technologies that are based on SNPs, STRs namely Y-STR, X-STR, mitochondrial DNA profiling in forensic science. Module 4 explores the application of non-human forensic DNA typing of domestic animals, wildlife forensics, plant DNA fingerprinting, and microbial forensics. The last module discusses new areas and alternative methods in forensic DNA typing, including Next-Generation Sequencing, and its utility in forensic science, oral microbes, and forensic DNA phenotyping. Given its scope, the book is a useful resource in the field of DNA fingerprinting for scientists, forensic experts, and students at the postgraduate level.

Stromal Signaling in Cancer, Volume 154 in the Advances in Cancer Research series, highlights new advances in the field, with this new volume presenting interesting chapters on a variety of timely topics surrounding cancer research. Each chapter is written by an international board of authors.

The limited aqueous solubility of bioactive pharmaceutical ingredients presents a tremendous challenge in the development of new drugs. In recent years, methods have been developed to protect these sensitive bioactive compounds, namely antioxidants, with the aim of increasing the public sanitation grades. Emulsion-based systems are particularly interesting as colloidal delivery encapsulation systems, because they can easily be created from food-grade ingredients using relatively simple processing protocols. It is one of the most favorable delivery systems to increase the solubility of phytochemicals, nutraceuticals and food additives. Emulsion-based Encapsulation of Antioxidants: Design and Performance advances the field of colloid science through the investigation of the effects of formulation and process parameters that influence emulsion production. The book offers a deeper comprehension of the technological and biological aspects of the incorporation of encapsulated compounds in food matrices and explication of their activity. Chapters provide an overview of the status of emulsion-based formulations to encapsulate antioxidants, fabrication, properties, applications, and biological fate with emphasis on systems suitable for utilization within industry. Special emphasis is placed on the antioxidant activity of the carriers being the key advantage of these emulsion-based systems. The main aim of the book is to inspire and to guide fellow scientists and students in this field. Filled with illustrations, figures, case studies, practical examples, and historical perspectives, the book can also be used as a practical handbook or graduate textbook. For industry professionals, the book presents easy-to-achieve approaches to industrial pharmaceutical production.

Microbial infections still represent one of the major causes of mortality and morbidity worldwide. Irrational usage of antimicrobials has lead to increased resistance, causing clinical, social and economical disabilities. Therefore, one of the major challenges of scientists is to develop novel alternative methods to handle infections and reduce resistance and other side effects produced by the actual therapies. The aim of this book is to offer a perspective on novel approaches to handle infections by using naturally-derived products in order to modulate the virulence of pathogens, without the risk of developing resistance. We intend to highlight the utility of microbial, vegetal and animal-derived compounds with potential antimicrobial activity by exploiting their effect on microbial virulence. Furthermore, this book aims to reveal the potential to assimilate recent bio-technological findings, like the usage of nanotechnology as efficient shuttles for stabilizing, improved targeting and the controlled release of natural products in order to efficiently fight infections.

Food Safety Engineering is the first reference work to provide up-to-date coverage of the advanced technologies and strategies for the engineering of safe foods. Researchers, laboratory staff and food industry professionals with an interest in food engineering safety will find a singular source containing all of the needed information required to understand this rapidly advancing topic. The text lays a solid foundation for solving microbial food safety problems, developing advanced thermal and non-thermal technologies, designing food safety preventive control processes and sustainable operation of the food safety preventive control processes. The first section of chapters presents a comprehensive overview of food microbiology from foodborne pathogens to detection methods. The next section focuses on preventative practices, detailing all of the major manufacturing processes assuring the safety of foods including Good Manufacturing Practices (GMP), Hazard Analysis and Critical Control Points (HACCP), Hazard Analysis and Risk-Based Preventive Controls (HARPC), food traceability, and recalls. Further sections provide insights into plant layout and equipment design, and maintenance. Modeling and process design are covered in depth. Conventional and novel preventive controls for food safety include the current and emerging food processing technologies. Further sections focus on such important aspects as aseptic packaging and post-packaging technologies. With its comprehensive scope of up-to-date technologies and manufacturing processes, this is a useful and first-of-its kind text for the next generation food safety engineering professionals.

This book provides authentic and comprehensive information on the concepts, methods, functional details and applications of nano-emulsions. Following an introduction to the applications of nanotechnology in the development of foods, it elaborates on food-grade nano-emulsion and their significance, discusses various techniques and methods for producing food-grade nano-emulsion, and reviews the main ingredient and component of food-grade nano-emulsions. Further, the book includes a critical review of the engineering aspect of fabricating food-grade nano-emulsions and describe recently developed vitamin encapsulated nano-systems. In closing, it discuss the challenges and opportunities of characterizing nano-emulsified systems, the market risks and opportunities of nano-emulsified foods, and packaging techniques and safety issues - including risk identification and risk management - for nano-foods. The book offers a unique guide for scientists and researchers working in this field. It will also help researchers, policymakers, industry personnel, journalists and the general public to understand food nanotechnology in great detail.

This book focuses on probiotics and gut microbiota, as well as their roles in alleviating the toxicity of various environmental pollutants, presenting the latest research findings and explaining advanced research methods and tools. At the same time, it offers suggestions for future research directions. Further, the book introduces readers to the concept of gut remediation, a potential approach to reducing environmental-pollutant toxicity in vivo, based on modulation of gut microbiota using probiotic supplements. Lastly it provides suggestions for further reading.

This book provides information about the nontarget nature of selected soil enzymes which are implicated in soil fertility and health and the methods for their assay. It also shows how these soil enzymes are affected by two different pesticides, buprofezin and acephate, used both extensively and intensively in modern agriculture.

This book gives an overview on techniques and future perspectives of various aspects of waste biomass management. It also presents the economic and environmental evaluation, and also the monetary value-benefits and sustainability of the different processes. Recycling processes of lignocellulosic biomass from palm oil mill waste are covered, as well as from sugar industry waste and agriculture waste. It also includes thermal and non-thermal technologies for resource recovery from waste biomass. Challenges in the reuse and recycling of waste biomass are discussed, i.e., the hygienic safety in biomass management and bioremediation technologies for conversion into valuable products. The book is aiming at scientists, researchers and students alike, who are working in the research areas pertaining to waste management

This book presents a compilation of case studies from different countries on achieving agricultural sustainability. The book stresses that, in order to meet the needs of our rapidly growing population, it is imperative to increase agricultural productivity. If global food production is to keep pace with an increasing population, while formulating new food production strategies for developing countries, the great challenge for modern societies is to boost agricultural productivity. Today, the application of chemicals to enhance plant growth or induced resistance in plants is limited due to the negative effects of chemical treatment and the difficulty of determining the optimal concentrations to benefit the plant. In the search for alternative means to solve these problems, biological applications have been extensively studied. Naturally occurring plant-microbe-environment interactions are utilized in many ways to enhance plant productivity. As such, a greater understanding of how plants and microbes coexist and benefit one another can yield new strategies to improve plant productivity in the most sustainable way. Developing sustainable agricultural practices requires understanding both the basic and applied aspects of agriculturally important microorganisms, with a focus on transforming agricultural systems from being nutrient-deficient to nutrient-rich. This work is divided into two volumes, the aim being to provide a comprehensive description and to highlight a holistic approach, respectively. Taken together, the two volumes address the fundamentals, applications, research trends and new prospects of agricultural sustainability.  Volume one consists of two sections, with the first addressing the role of microbes in sustainability, and the second exploring beneficial soil microbe interaction in several economically important crops. Section I elucidates various mechanisms and beneficial natural processes that enhance soil fertility and create rhizospheric conditions favourable for high fertility and sustainable soil flora. It examines the mechanism of action and importance of rhizobacteria and mycorrhizal associations in soil. In turn, section II presents selected case studies involving economically important crops. This section explains how agriculturally beneficial microbes have been utilized in sustainable cultivation with high productivity. Sustainable food production without degrading the soil and environmental quality is a major priority throughout the world, making this book a timely addition. It offers a comprehensive collection of information that will benefit students and researchers working in the field of rhizospheric mechanisms, agricultural microbiology, biotechnology, agronomy and sustainable agriculture, as well as policymakers in the area of food security and sustainable agriculture.