From breakfast toast to evening wine, yeast is the microscopic thing that we cannot live without. We knew what yeast did as an invisible brewer and baker long before we had a clue about the existence of microorganisms. Ten thousand years ago, our ancestors abandoned bush meat and wild fruit in favor of farming animals and cultivating grain. Leaving the forests and grasslands, our desire for beer and wine produced by the fungus was a major stimulus for agricultural settlement. It takes a village to run a brewery or tend a vineyard. We domesticated wild yeast and yeast domesticated us. With the inevitable escape of the fungus from beer vats into bread dough, our marriage with yeast was secured by an appetite for fresh loaves of leavened bread. Over the millennia, we have adapted the technologies of brewing, winemaking, and baking and have come to rely on yeast more and more. Yeast produces corn ethanol and other biofuels and has become the genetically-modified darling of the pharmaceutical business as a source of human insulin and a range of life-saving medicines. These practical uses of yeast have been made possible by advances in our understanding of its biology, and the power of genetic engineering has been used to modify the fungus to do just about anything we wish. We know more about yeast than any other organism built from complex cells like our own. To understand yeast is to understand life. In this book Nicholas P. Money offers a celebration of our favorite microorganism.

Nuclear Reprogramming: Methods and Protocols, Second Edition includes not only classic methods to perform nuclear transfer in different species but also several techniques to assess the early and late development of the reconstructed embryos, at the cellular, molecular, and epigenetic level. Over the past several years, many technical improvements have been made to improve somatic cell nuclear transfer (SCNT) efficiency, all of which are reflected in the detailed chapters of this fully revised collection. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and up-to-date, Nuclear Reprogramming: Methods and Protocols, Second Edition will be of interest not only to cloners but also to researchers concerned with studying the development of embryos.

Rapid changes and significant progress have been made in the Agrobacterium field, such as genetically transforming plants for both basic research purposes and agricultural development. In Agrobacterium Protocols, Third Edition, Volumes 1 and 2, a team of leading experts and veteran researchers describe in detail techniques for delivering DNA to plant cells and permanently altering their genomes. This edition emphasizes agricultural crops and plant species with economic values, with updated protocols on 32 plant species and protocols involving 19 new species. Together with the 1st and 2nd editions, these two volumes offer Agrobacterium-mediated genetic transformation protocols for a total of 76 plant species. For a number of important plants such as rice, barley, wheat and citrus, multiple protocols using different starting plant materials for transformation are included. Volume 1 details updated techniques available for 18 plant species drawn from cereal crops, legume plants, vegetable plants, and three model plant species: Brachypodium distachyon, Medicago truncatula, and Setaria viridis. It also updates a chapter for vector construction, a step critical to a successful plant transformation process. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Agrobacterium Protocols, Third Edition facilitates the transfer of this rapidly developing technology to all researchers for use in both fundamental and applied biology.

Homing Endonucleases: Methods and Protocols aims at providing molecular biologists with a comprehensive resource to identify and characterize homing endonucleases from genomic sequence, to deduce the biological basis of binding and cleavage specificity, as well as to provide protocols to redesign endonuclease target specificity for genome-editing applications. Engineering of designer homing endonucleases has set the stage for genome editing of complex eukaryotic genomes with a broad range of potential applications including targeted gene knockouts in model organisms and gene therapy in humans, making this book a valuable resource for future research. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Homing Endonucleases: Methods and Protocols serves as a key reference for all labs studying site-specific DNA endonucleases.

This book, written by experienced geneticists, covers topics ranging from the natural history of the mouse species, its handling and reproduction in the laboratory, and its classical genetics and cytogenetics, to modern issues including the analysis of the transcriptome, the parental imprinting and X-chromosome inactivation. The strategies for creating all sorts of mutations, either by genetic engineering or by using mutagens, are also reviewed and discussed in detail. Finally, a last chapter outlines the methodology used for the analysis of complex or quantitative traits. The authors also discuss the importance of accurate phenotyping, which is now performed in the mouse clinics established worldwide and identify the limits of the mouse model, which under certain circumstances can fail to present the phenotype expected from the cognate condition in the human model. For each chapter an up-to-date list of pertinent references is provided. In short, this book offers an essential resource for all scientists who use or plan to use mice in their research.

Bacterial genomics is a mature research interdisciplinary field, which is approached by ecologists, geneticists, bacteriologists, molecular biologists and evolutionary biologists working in medical, industrial and basic science. Thanks to the large diffusion of bacterial genome analysis, Bacterial Pangenomics: Methods and Protocols is able to provide the most recent methodologies about the study of bacterial pangenomes by covering the three major areas: the experimental methods for approaching bacterial pangenomics, the bio informatic pipelines for analysis and annotation of sequence data and finally the methods for inferring functional and evolutionary features from the pangenome. Written in the successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols and notes on troubleshooting and avoiding known pitfalls. Authoritative and easily accessible, Bacterial Pangenomics: Methods and Protocols will serve as a field guide for both qualified bacterial genomics investigators who want to update their technical knowledge, for less experienced researchers who want to start working with bacterial genomics and pangenomics, as well as serving as a manual and supplemental textbook for graduate students of genomics and bioinformatics.

Directed Evolution Library Creation: Methods and Protocols, Second Edition presents user-friendly protocols for both proven strategies and cutting-edge approaches for the creation of mutant gene libraries for directed evolution. As well as experimental methods, information on current computational approaches is provided in a user-friendly format that will allow researchers to make informed choices without needing to comprehend the full technical details of each algorithm. Directed evolution has become a fundamental approach for engineering proteins to enhance activity and explore structure-function relationships, and has supported the rapid development of the field of synthetic biology over the last decade. Divided into three convenient sections, topics include point mutagenesis strategies, recombinatorial methods wherein genetic diversity is sourced from multiple parental genes that are combined via either homology-dependent or -independent techniques and a variety of computational methods to guide the design and analysis of mutant libraries. Written in the successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols and notes on troubleshooting and avoiding known pitfalls. Authoritative and easily accessible, Directed Evolution Library Creation: Methods and Protocols, Second Edition will serve as a reliable manual for both novice and experienced protein engineers and synthetic biologists and will enable further technical innovation and the exploitation of directed evolution for a deeper understanding of protein design and function.

Rapid changes and significant progress have been made in the Agrobacterium field, such as genetically transforming plants for both basic research purposes and agricultural development. In Agrobacterium Protocols, Third Edition, Volumes 1 and 2, a team of leading experts and veteran researchers describe in detail techniques for delivering DNA to plant cells and permanently altering their genomes. This edition emphasizes agricultural crops and plant species with economic values, with updated protocols on 32 plant species and protocols involving 19 new species. Together with the 1st and 2nd editions, these two volumes offer Agrobacterium-mediated genetic transformation protocols for a total of 76 plant species. For a number of important plants such as rice, barley, wheat and citrus, multiple protocols using different starting plant materials for transformation are included. Volume 2 contains 29 chapters with updated techniques for industrial plants, root plants, nuts and fruits, tropic plants, and other important plant species. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Agrobacterium Protocols, Third Edition facilitates the transfer of this rapidly developing technology to all researchers in both fundamental and applied biology.

DNA Vaccines: Methods and Protocols, Third Edition explores innovative approaches and technologies used to design, deliver, and enhance the efficacy of DNA vaccines. Featuring applications which should be of great value in moving vaccines from research to clinic, this detailed volume includes sections on DNA vaccine design and enhancement, delivery systems, production, purification, and quality, as well as chapters on new vaccine applications. Written in the highly successful Methods in Molecular Biology series format, chapters contain introductions their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, DNA Vaccines: Methods and Protocols, Third Edition serves the important role of further documenting the potential of the DNA vaccination as a platform technology for treatment and prevention of human disease.

This volume offers an up-to-date overview of biotechnologically oriented barley research. It is structured into two major sections: the first focusing on current agricultural challenges and approaches to barley improvement, and the second providing insights into recent advances in methodology. Leading scientists highlight topics such as: the global importance of barley; genetic diversity and genebanks; domestication; shoot and inflorescence architecture; reproductive development; mineral nutrition; photosynthesis and leaf senescence; grain development; drought tolerance; viral and fungal pathogens; phytophagous arthropods; molecular farming; sequence resources; induced genetic variation and TILLING; meiotic recombination; Hordeum bulbosum; genome-wide association scans; genomic selection; haploid technology; genetic engineering; and whole plant phenomics. Providing comprehensive information on topics ranging from fundamental aspects to specific applications, this book offers a useful resource for scientists, plant breeders, teachers and advanced students in the fields of molecular and plant cell biology, plant biotechnology, and agronomy.

I entered the gene therapy field in the mid-1990s, being fascinated by the immense potential of genes as drugs for the treatment of human disease. Since then, I have experienced the ups and downs of this discipline, and tried to contribute with my work and that of my laboratory to the development of innovative approaches to the treatment of cardiovascular disorders. During these years, I have had several opp- tunities to speak on gene therapy at lectures and academic lessons, and have often noticed that the field is very attractive to scientists of all disciplines. However, as yet no comprehensive book on the subject has been published. Indeed, most books in the field are either a collection of gene transfer laboratory protocols or deal with the subject in a rather superficial manner. Hence the idea to write a gene therapy textbook that is broad and comprehensive, but at the same time provides sufficient molecular and clinical detail to be of interest to students, professors, and specialists in the various disciplines that contribute to gene therapy. I have tried to keep the language plain and, whenever possible, non-technical. Since the book is intended to be a textbook in the field of gene therapy in both the basic science and clinical areas, whenever technical descriptions are required, they are provided.

Manyexcitingdiscoveriesinrecentdecadeshavecontributednewknowledgeto ourunderstandingofthemechanismsthatregulatevariousstagesofplantgrowth anddevelopment. Suchinformation,coupledwithadvancesincellandmolecular biology,isfundamentaltocropimprovementusingbiotechnologicalapproaches. Twovolumesconstitutethepresentwork. The?rst,comprising22chapters, commenceswithintroductionsrelatingtogeneregulatorymodelsforplantdev- opmentandcropimprovement,particularlytheuseofArabidopsisasamodelplant. Thesechaptersarefollowedbyspeci?ctopicsthatfocusondifferentdevelopmental aspectsassociatedwithvegetativeandreproductivephasesofthelifecycleofa plant. Six chapters discuss vegetative growth and development. Their contents considertopicssuchasshootbranching,buddormancyandgrowth,thedevel- ment of roots, nodules and tubers, and senescence. The reproductive phase of plantdevelopmentisin14chaptersthatpresenttopicssuchas?oralorganinit- tionandtheregulationof?owering,thedevelopmentofmaleandfemalegametes, pollengerminationandtubegrowth,fertilization,fruitdevelopmentandripening, seed development, dormancy, germination, and apomixis. Male sterility and self-incompatibilityarealsodiscussed. Volume2has20chapters,threeofwhichreviewrecentadvancesinsomatic embryogenesis,microsporeembryogenesisandsomaclonalvariation. Sevenofthe chapterstargetplantprocessesandtheirregulation,includingphotosynthatepartiti- ing,seedmaturationandseedstorageproteinbiosynthesis,theproductionandregu- tionoffattyacids,vitamins,alkaloidsand?owerpigments,and?owerscent. This secondbookalsocontainsfourchaptersonhormonalandenvironmentalsignaling (aminocompounds-containinglipids,auxin,cytokinin,andlight)intheregulationof plantdevelopment;othertopicsencompassthemoleculargeneticsofdevelopmental regulation,includingRNAsilencing,DNAmethylation,epigenetics,activationt- ging,homologousrecombination,andtheengineeringofsyntheticpromoters. Thesebookswillserveaskeyreferencesforadvancedstudentsandresearchers involved in a range of plant-orientated disciplines, including genetics, cell and molecularbiology,functionalgenomics,andbiotechnology. August2009 E-C. PuaandM. R. Davey v Contents PartI CellDifferentiationandDevelopmentInVitro 1 DevelopmentalBiologyofSomaticEmbryogenesis ...3 R. J. Rose,F. R. Mantiri,S. Kurdyukov,S-K. Chen,X-D. Wang, K. E. Nolan,andM. B. Sheahan 1. 1 Introduction ...3 1. 2 BasicRequirementsforInVitroSE ...4 1. 3 ExplantandStemCellBiology ...5 1. 3. 1 Genotype ...5 1. 3. 2 ExplantCells ...6 1. 4 EarliestEventinEmbryogenesis-AsymmetricCellDivision ...8 1. 4. 1 CellWallinEstablishmentofPolarity,DivisionAsymmetry andCellFate ...8 1. 4. 2 DivisionAsymmetryintheInitiationofSE ...10 1. 4. 3 AsymmetricDivisionandtheSuspensorinSE ...10 1. 5 StressComponentintheInitiationofSE ...11 1. 5. 1 ReactiveOxygenSpecies ...11 1. 5. 2 Stress-RelatedHormoneSignalling ...12 1. 6 HormonesandtheInitiationofSE ...13 1. 7 InductionofSEbyOver-ExpressionofLeafyCotyledon TranscriptionFactorsandTheirRelationshiptoSEInductionand Repression-theGAConnection ...14 1. 8 ABA,StressandGA ...16 1. 9 SolubleSignalsandCell-CellInteractionsthatPromoteSEin SuspensionCultures ...16 1. 9. 1 SecretedProteinsthatIn?uenceSE ...16 1. 9. 2 AGPSignallinginSE:MechanismsandInteractionsBetween SignallingPathways ...17 1. 9. 3 Cell-AsymmetricCellDivision ...8 1. 4. 1 CellWallinEstablishmentofPolarity,DivisionAsymmetry andCellFate ...8 1. 4. 2 DivisionAsymmetryintheInitiationofSE ...10 1. 4. 3 AsymmetricDivisionandtheSuspensorinSE ...10 1. 5 StressComponentintheInitiationofSE ...11 1. 5. 1 ReactiveOxygenSpecies ...11 1. 5. 2 Stress-RelatedHormoneSignalling ...12 1. 6 HormonesandtheInitiationofSE ...13 1. 7 InductionofSEbyOver-ExpressionofLeafyCotyledon TranscriptionFactorsandTheirRelationshiptoSEInductionand Repression-theGAConnection ...14 1. 8 ABA,StressandGA ...16 1. 9 SolubleSignalsandCell-CellInteractionsthatPromoteSEin SuspensionCultures ...16 1. 9. 1 SecretedProteinsthatIn?uenceSE ...16 1. 9. 2 AGPSignallinginSE:MechanismsandInteractionsBetween SignallingPathways ...17 1. 9. 3 Cell-Manyexcitingdiscoveriesinrecentdecadeshavecontributednewknowledgeto ourunderstandingofthemechanismsthatregulatevariousstagesofplantgrowth anddevelopment. Suchinformation,coupledwithadvancesincellandmolecular biology,isfundamentaltocropimprovementusingbiotechnologicalapproaches. Twovolumesconstitutethepresentwork. The?rst,comprising22chapters, commenceswithintroductionsrelatingtogeneregulatorymodelsforplantdev- opmentandcropimprovement,particularlytheuseofArabidopsisasamodelplant. Thesechaptersarefollowedbyspeci?ctopicsthatfocusondifferentdevelopmental aspectsassociatedwithvegetativeandreproductivephasesofthelifecycleofa plant. Six chapters discuss vegetative growth and development. Their contents considertopicssuchasshootbranching,buddormancyandgrowth,thedevel- ment of roots, nodules and tubers, and senescence. The reproductive phase of plantdevelopmentisin14chaptersthatpresenttopicssuchas?oralorganinit- tionandtheregulationof?owering,thedevelopmentofmaleandfemalegametes, pollengerminationandtubegrowth,fertilization,fruitdevelopmentandripening, seed development, dormancy, germination, and apomixis. Male sterility and self-incompatibilityarealsodiscussed. Volume2has20chapters,threeofwhichreviewrecentadvancesinsomatic embryogenesis,microsporeembryogenesisandsomaclonalvariation. Sevenofthe chapterstargetplantprocessesandtheirregulation,includingphotosynthatepartiti- ing,seedmaturationandseedstorageproteinbiosynthesis,theproductionandregu- tionoffattyacids,vitamins,alkaloidsand?owerpigments,and?owerscent. This secondbookalsocontainsfourchaptersonhormonalandenvironmentalsignaling (aminocompounds-containinglipids,auxin,cytokinin,andlight)intheregulationof plantdevelopment;othertopicsencompassthemoleculargeneticsofdevelopmental regulation,includingRNAsilencing,DNAmethylation,epigenetics,activationt- ging,homologousrecombination,andtheengineeringofsyntheticpromoters. Thesebookswillserveaskeyreferencesforadvancedstudentsandresearchers involved in a range of plant-orientated disciplines, including genetics, cell and molecularbiology,functionalgenomics,andbiotechnology. August2009 E-C. PuaandM. R. Davey v Contents PartI CellDifferentiationandDevelopmentInVitro 1 DevelopmentalBiologyofSomaticEmbryogenesis ...3 R. J. Rose,F. R. Mantiri,S. Kurdyukov,S-K. Chen,X-D. Wang, K. E. Nolan,andM. B. Sheahan 1. 1 Introduction ...3 1. 2 BasicRequirementsforInVitroSE ...4 1. 3 ExplantandStemCellBiology ...5 1. 3. 1 Genotype ...5 1. 3. 2 ExplantCells ...6 1. 4 EarliestEventinEmbryogenesis-AsymmetricCellDivision ...8 1. 4. 1 CellWallinEstablishmentofPolarity,DivisionAsymmetry andCellFate ...8 1. 4. 2 DivisionAsymmetryintheInitiationofSE ...10 1. 4. 3 AsymmetricDivisionandtheSuspensorinSE ...10 1. 5 StressComponentintheInitiationofSE ...11 1. 5. 1 ReactiveOxygenSpecies ...11 1. 5. 2 Stress-RelatedHormoneSignalling ...12 1. 6 HormonesandtheInitiationofSE ...13 1. 7 InductionofSEbyOver-ExpressionofLeafyCotyledon TranscriptionFactorsandTheirRelationshiptoSEInductionand Repression-theGAConnection ...14 1. 8 ABA,StressandGA ...16 1. 9 SolubleSignalsandCell-CellInteractionsthatPromoteSEin SuspensionCultures ...16 1. 9. 1 SecretedProteinsthatIn?uenceSE ...16 1. 9. 2 AGPSignallinginSE:MechanismsandInteractionsBetween SignallingPathways ...17 1. 9. 3 Cell-CellInteractionandRelevancetoSEinSuspension Cultures ...18 vii viii Contents 1. 10 DevelopmentProgramAfterSEInduction ...19 1. 11 ConcludingRemarksandaModelBasedonStudiesin Medicagotruncatula ...19 1. 12 SEandBiotechnology ...20 References ...21 2 MicrosporeEmbryogenesis ...27 A. Olmedilla 2. 1 Introduction ...27 2. 2 DiscoveryoftheProductionofHaploidsbyAntherCulture ...29 2. 3 StrategiesfortheInductionofMicrosporeEmbryogenesis ...29 2. 4 In?uenceofDifferentFactorsinMicrosporeEmbryogenesis ...30 2. 4. 1 Genotype ...30 2. 4. 2 DonorPlantPhysiology ...31 2. 4. 3 StageofPollenDevelopment ...

Focused manuscript on the potential use/role of miRNAs in bioprocessing, specifically the production of complex proteins in mammalian cells. With that in mind I propose a draft list of topics/chapters along the following lines: Intro on CHO/bioprocessing/engineering challenges to set scene, Genomic organization, biogenesis and mode of action, Identifying miRNA targets: Computational prediction, transcriptomics, proteomices, UTR analysis, etc., miRNA expression in Chinese Hamster Ovary cells, miRNAs as engineering targets: pathway manipulation to impact bioprocess phenotypes, miRNAs as biomarkers, Detection methods: Northern, PCR, hybridization arrays, Next Gen Seq, Manipulation of expression in cultured cells: Transient/stable disregulation, Knockout.

In February 2001, two separate teams published the first working drafts of the entire human genome, marking an achievement that is certainly one of the seminal developments in our understanding of human biology. A grasp of the function of each gene will radically change how we diagnose and prevent diseases and adminster treatments. But the drive to turn the completed sequence into practical knowledge is fraught with complexity. This volume, a summary of the eponymous symposium, gives the student and practitioner alike insight into some of the challenges this new science faces and the lessons it has already taught us. Included are presentations by several leading experts in the field, among them Ian Dunham and Jean Weissenbach.

An increasingly hot-button issue, genetically modified (GM) food is considered by some as the best way to feed the world's growing population, and by others as an experiment gone wrong on the unsuspecting public. Genetically Modified Foods: Basics, Applications, and Controversy details the basics of biotechnology and its applications in the laboratory and the field. It provides a balanced presentation of the pros and cons of GM foods, examining the arguments of proponents and opponents, and covering regulations governing GM food labeling. The book includes definitions of biotechnology considered from different perspectives; examines different techniques, including their advantages and shortcomings; and highlights the unintended consequences of traditional and modern GM techniques. The text also includes information on the use of biotechnology to produce nutraceuticals and functional foods and biofuels. Discussions of mandatory, non-mandatory, and global labeling; issues of concern, controversy, and consumer welfare; consumer knowledge and right to choose; and the media's actual and expected roles in educating and informing the public round out the coverage. A 360-degree review of GM foods and the issues surrounding them, this book adds to the scientific debate and examines the issues through this lens, giving you information required not only to make an informed decision, but also to be able to discuss your decision with others. It moves this heated debate closer to the day when consumer welfare remains at the heart of the discussion.

Synthetic Biology (SB) is a revolutionary discipline with a vast range of practical applications, but is SB research really based on engineering principles? Does it contributing to the artificial synthesis of life or does it utilise approaches sufficiently advanced to fall outside the scope of biotechnology or metabolic engineering? This volume reviews the development of SB and includes the major milestones of the discipline, the 'top-down' and 'bottom-up' approaches towards the construction of an artificial cell and the development of the "iGEM" competition. We conclude that SB is an emerging field with extraordinary technological potential, but that most research projects actually are an extension of metabolic engineering since the complexity of living organisms, their tight dependence on evolution and our limited knowledge of the interactions between the molecules, actually make life difficult to engineer.

TwentyyearshavegonebysinceJackSokatch?rstpublishedhisoutsta- ingTheBiologyofPseudomonasbackin1986.Thiswasfollowedbytwobooks published by the ASM that contained the presentations of the Pseudomonas meetings held in Chicago in 1989 and Trieste in 1991. The earlier volume of these two was edited by Simon Silver, Al Chakrabarty, Barbara Iglewski, and Sam Kaplan, and the later one by Enrica Galli, Simon Silver, and Bernard Witholt. The time was ripe for a series of books on Pseudomonas because of its importance in human and plant pathogenesis, bio?lms, soil and rhizosphere colonization, etc. Efforts were devoted to produce the ?rst three volumes of the series on the biology of Pseudomonas after a meeting with Kluwer staff members in August 2002 during the XI IUMS conference in Paris (France). In less than a year a group of outstanding scientists in the ?eld, after devoting much of their valuable time, managed to complete their chapters for the three volumes of the series. To ensure the high standard of each chapter, renowned scientists participated in the reviewing process. The three books collected part of the "explosion" of new vital information on the genus Pseudomonas.

Over the past decade, our laboratory and others have been concerned with molecular archaeological studies aimed at revealing the origins and evolutionary histories of permeases (1). These studies have revealed that several different families, defined on the basis of sequence similarities, arose independently of each other, at different times in evolutionary history, following different routes. When complete microbial genomes first became available for analysis, we adapted p- existing software and designed new programs that allowed us quickly to identify probable transmembrane proteins, estimate their topologies and determine the likelihood that they function in transport (2). This work allowed us to expand previously-recognized families and to identify dozens of new families. All of this work then led us to attempt to design a rational but comprehensive classification system that would be applicable to the complete complement of transport systems found in all living organisms (3). The classification system that we have devised is based primarily on mode of transport and energy coupling mechanism, secondarily on molecular phylogeny, and lastly on the substrate specificities of the individual permeases (4).

Systems Metabolic Engineering is changing the way microbial cell factories are designed and optimized for industrial production. Integrating systems biology and biotechnology with new concepts from synthetic biology enables the global analysis and engineering of microorganisms and bioprocesses at super efficiency and versatility otherwise not accessible. Without doubt, systems metabolic engineering is a major driver towards bio-based production of chemicals, materials and fuels from renewables and thus one of the core technologies of global green growth. In this book, Christoph Wittmann and Sang-Yup Lee have assembled the world leaders on systems metabolic engineering and cover the full story - from genomes and networks via discovery and design to industrial implementation practises. This book is a comprehensive resource for students and researchers from academia and industry interested in systems metabolic engineering. It provides us with the fundaments to targeted engineering of microbial cells for sustainable bio-production and stimulates those who are interested to enter this exiting research field.

Coxiella burnetii is the etiological agent of Q fever, a zoonotic disease found worldwide. The bacterium is a fascinating example of intracellular parasitism that has uniquely evolved to thrive in the most inhospitable of cellular compartments-the phagolysosome. Understanding how C. burnetii resists the degradative functions of this vacuole, and the host cell functions coopted for successful parasitism, are central to understanding Q fever pathogenesis. Recent achievements in glycomics and proteomics are guiding development of enhanced detection schemes for the bacterium in addition to shedding light on the host immune response to the pathogen. Several chapters survey immune functions that control or potentially exacerbate Coxiella infection and delve into correlates of protective immunity elicited by vaccination. Comparative genomics is also the foundation of chapters discussing diagnostic antigen discovery and molecular typing of the bacterium, with significance for development of new clinical, epidemiologic, and forensic tools.

Mutant Ecologies traces the spinning of new synthetic threads into the web of life. It is a critical cartography of the shifting landscapes of capital accumulation conjured by recent developments in genomic science, genome editing and the biotech industry. CRISPR crops, fast-growing salmons, heat-resistant Slick (TM) cows, Friendly (TM) Mosquitoes, humanised mice, pigs growing human organs - these are but a few of the dazzling new life-forms that have recently emerged from corporate and university laboratories around the world, all promising to lubricate the circuits of capital accumulation in distinct ways. The deliberate induction of genetic mutations is increasingly central to business operations in a number of sectors, from agriculture to pharmaceuticals. While the Nobel Committee recently proclaimed the life sciences to have entered 'a new epoch', the authors show how these technological innovations continue to operate within a socio-historical context defined by the iron rules of capitalist competition and exploitation. Capital no longer contents itself with simply appropriating the living bodies of plants and animals. It purposefully designs their internal metabolism, and in that way it redesigns the countless living vectors that constitute the global biosphere. It is driving a biological revolution, which will ripple through the everyday lives of people everywhere.

J. Warren Evans Department of Animal Science Texas A&M University College Station, Texas 77843 In the near future, improvement of domestic animals for the production of food and fiber is poised to undergo a revolution by the utilization of recent breakthroughs and advances in molecular genetics, embryo manipula tions, and gene transfer systems. Utilization of these techniques will have a wide impact on animal agriculture by improvement of production effi ciency via manipulation and control of many physiological systems. The end result will be to decrease production costs, increase food production and quality, and lower food costs. Health and well being of domestic and other animals will be improved as a result of new methods of disease diagnosis, vaccine production, and disease prevention practices. Genetic engineering also offers the possibility of utilizing animals for the development of pharmaceutical products to benefit society. Research progress will be en hanced via manipulation of the gene pool. The objectives of this Conference were to discuss the current status of animal bioengineering and to realistically assess the potential applica tions of current and future genetic technologies for the production of food and fiber to meet the needs of our hungry world, and to provide animal sci entists who may wish to utilize bioengineering in current or future re search programs with current background information regarding concepts, ap plications, and methodologies."

SpringerBriefs in Biotech Patents presents timely reports on intellectual properties (IP) issues and patent aspects in the field of biotechnology. In this volume the limits of patentability are addressed, a question that is often raised when it comes to biotechnological inventions: The first section addresses current issues in the patentability of plants produced by essentially biological processes including the controversy between farmer's privilege and patent exhaustion with respect to seeds in the US. The second section examines the patentability of human embryonic stem cells in Europe and the US, also considering alternative technologies with respect to their practicability and patentability. The third section focuses on the patentability of genes and nucleic acids, especially the issue of patenting of encoding genes and nucleic acids.

Molecular farming in plants is a relatively young subject of sciences. As plants can offer an inexpensive and convenient platform for the large-scale production of recombinant proteins with various functions, the driven force from the giant market for recombinant protein pharmaceuticals and industrial enzymes makes this subject grow and advance very quickly. To summarize recent advances, current challenges and future directions in molecular farming, international authorities were invited to write this book for researchers, teachers and students who are interested in this subject. This book, with the focus on the most advanced cutting-edge breakthroughs, covers all the essential aspects of the field of molecular farming in plants: from expression technologies to downstream processing, from products to safety issues, and from current advances and holdups to future developments.

In the past few decades there has been incredible growth in "bionano"-related research, which has been accompanied by numerous publications in this field. Although various compilations address topics related to deoxyribonucleic acid (DNA) and protein, there are few books that focus on determining the structure of ribonucleic acid (RNA) and using RNA as building blocks to construct nanoarchitectures for biomedical and healthcare applications.

RNA Nanotechnology is a comprehensive volume that details both the traditional approaches and the latest developments in the field of RNA-related technology. This book targets a wide audience: a broad introduction provides a solid academic background for students, researchers, and scientists who are unfamiliar with the subject, while the in-depth descriptions and discussions are useful for advanced professionals.

The book opens with reviews on the basic aspects of RNA biology, computational approaches for predicting RNA structures, and traditional and emerging experimental approaches for probing RNA structures. This section is followed by explorations of the latest research and discoveries in RNA nanotechnology, including the design and construction of RNA-based nanostructures. The final segment of the book includes descriptions and discussions of the potential biological and therapeutic applications of small RNA molecules, such as small/short interfering RNAs (siRNAs), microRNAs (miRNAs), RNA aptamers, and ribozymes.